Wall clock time and date at job start Mon Mar 30 2020 07:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.53001 * 109.47036 * 119.99967 * 2 1 3 5 5 H 1.09002 * 115.54929 * 325.67044 * 4 2 1 6 6 C 1.52997 * 117.51720 * 111.36796 * 4 2 1 7 7 C 1.53005 * 117.49933 * 179.97438 * 4 2 1 8 8 H 1.09000 * 117.49670 * 359.97438 * 7 4 2 9 9 C 1.50693 * 117.49671 * 144.99781 * 7 4 2 10 10 O 1.21287 * 120.00663 * 359.97438 * 9 7 4 11 11 N 1.34780 * 119.99931 * 180.02562 * 9 7 4 12 12 C 1.46501 * 119.99998 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.46760 * 269.99260 * 12 11 9 14 14 H 1.08002 * 119.99985 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47026 * 60.00514 * 17 15 13 19 19 H 1.48502 * 109.47185 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47259 * 300.00173 * 17 15 13 21 21 C 1.46497 * 119.99987 * 359.97438 * 11 9 7 22 22 C 1.53003 * 109.47329 * 270.00533 * 21 11 9 23 23 C 1.53001 * 117.51964 * 116.28255 * 22 21 11 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 21 25 25 H 1.09003 * 109.47026 * 59.99881 * 1 2 3 26 26 H 1.08995 * 109.47693 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47352 * 300.00375 * 1 2 3 28 28 H 1.09003 * 109.47328 * 240.00133 * 2 1 3 29 29 H 1.08998 * 109.47499 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47129 * 300.00056 * 3 2 1 31 31 H 1.08999 * 109.47175 * 59.99516 * 3 2 1 32 32 H 1.08998 * 117.50383 * 359.97438 * 6 4 2 33 33 H 1.09004 * 117.50061 * 214.96877 * 6 4 2 34 34 H 1.08998 * 109.47531 * 29.99334 * 12 11 9 35 35 H 1.09000 * 109.47050 * 150.00101 * 12 11 9 36 36 H 0.97000 * 120.00206 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47381 * 150.00018 * 21 11 9 38 38 H 1.09005 * 109.46933 * 30.00197 * 21 11 9 39 39 H 1.09002 * 115.54973 * 330.58039 * 22 21 11 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 21 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 21 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.51638 * 107.47550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.4309 -0.5979 2.1448 6 6 2.7417 -2.0664 1.0519 7 6 3.5550 -0.8286 1.4340 8 1 4.1883 -0.3858 0.6654 9 6 4.0913 -0.7553 2.8404 10 8 3.3293 -0.6156 3.7736 11 7 5.4179 -0.8439 3.0612 12 6 5.9393 -0.7731 4.4284 13 6 6.2319 0.6626 4.7808 14 1 6.0474 1.4442 4.0586 15 6 6.7349 0.9784 6.0250 16 7 6.9600 0.0266 6.9042 17 14 7.0969 2.7582 6.4620 18 1 5.8473 3.5550 6.3675 19 1 7.6255 2.8300 7.8479 20 1 8.1049 3.3044 5.5183 21 6 6.3385 -1.0121 1.9340 22 6 6.5433 -2.5035 1.6609 23 6 6.0685 -3.0469 0.3117 24 6 7.5650 -2.8919 0.5902 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.8398 -2.4381 0.0320 33 1 2.5944 -2.8280 1.8177 34 1 5.1989 -1.1735 5.1209 35 1 6.8562 -1.3584 4.4984 36 1 7.3136 0.2487 7.7797 37 1 7.2966 -0.5519 2.1756 38 1 5.9192 -0.5347 1.0482 39 1 6.4496 -3.1574 2.5279 40 1 5.6625 -4.0582 0.2912 41 1 5.6097 -2.3418 -0.3814 42 1 8.0909 -2.0848 0.0801 43 1 8.1437 -3.8011 0.7531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185315093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:30 Heat of formation + Delta-G solvation = -21.401427 kcal Electronic energy + Delta-G solvation = -20790.677027 eV Core-core repulsion = 17836.189884 eV Total energy + Delta-G solvation = -2954.487142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14107 -38.74050 -38.13535 -36.10222 -34.62638 -34.10059 -30.00059 -27.99630 -27.71313 -26.10664 -23.88912 -23.51435 -23.07222 -21.80127 -20.72249 -19.70173 -18.64293 -18.23358 -17.24975 -16.43613 -16.23471 -15.89402 -15.62385 -15.29627 -14.74932 -14.64857 -14.28602 -13.96036 -13.85283 -13.50052 -13.31698 -13.25571 -12.98396 -12.87208 -12.58673 -12.55431 -12.25701 -12.21968 -12.11482 -12.01346 -11.77133 -11.51859 -11.21757 -11.14637 -10.93241 -10.77970 -10.66153 -10.48045 -9.45059 -8.24599 -6.40117 1.33710 1.38645 1.45903 1.71082 2.24837 2.40646 2.95673 3.01395 3.04455 3.56651 3.82116 3.85428 3.93430 4.08551 4.11957 4.16713 4.27945 4.35095 4.46967 4.50597 4.70778 4.75121 4.84680 4.86762 4.87721 4.89548 4.96531 5.02657 5.07230 5.10631 5.11821 5.21003 5.25890 5.33165 5.35423 5.37638 5.47682 5.54123 5.58773 5.83986 6.03700 6.67134 6.80054 7.25884 7.49538 8.82475 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.006228 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.584212 B = 4494.746113 C = 5739.703655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.148 4.148 4 C -0.122 4.122 5 H 0.079 0.921 6 C -0.121 4.121 7 C -0.183 4.183 8 H 0.143 0.857 9 C 0.524 3.476 10 O -0.605 6.605 11 N -0.596 5.596 12 C 0.264 3.736 13 C -0.544 4.544 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.278 1.278 19 H -0.276 1.276 20 H -0.258 1.258 21 C 0.145 3.855 22 C -0.193 4.193 23 C -0.153 4.153 24 C -0.165 4.165 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.142 0.858 33 H 0.077 0.923 34 H -0.008 1.008 35 H 0.019 0.981 36 H 0.268 0.732 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -3.597 -20.753 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.206 4.206 4 C -0.141 4.141 5 H 0.097 0.903 6 C -0.158 4.158 7 C -0.204 4.204 8 H 0.160 0.840 9 C 0.314 3.686 10 O -0.488 6.488 11 N -0.325 5.325 12 C 0.142 3.858 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.204 1.204 19 H -0.201 1.201 20 H -0.183 1.183 21 C 0.022 3.978 22 C -0.212 4.212 23 C -0.190 4.190 24 C -0.202 4.202 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.010 0.990 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.308 -3.559 -20.075 21.067 hybrid contribution 0.423 0.729 1.553 1.766 sum -4.885 -2.830 -18.522 19.364 Atomic orbital electron populations 1.21796 0.94125 1.02244 1.01855 1.20730 0.96323 0.95409 0.94970 1.21847 1.00996 0.96127 1.01584 1.22489 0.91364 1.00016 1.00193 0.90274 1.23097 0.99317 0.89600 1.03826 1.22188 0.96376 1.08248 0.93539 0.83958 1.20494 0.81872 0.75263 0.90974 1.90612 1.58294 1.52569 1.47288 1.48096 1.06117 1.69757 1.08488 1.18676 0.92468 0.95917 0.78690 1.21662 1.43181 0.93529 0.99897 0.92971 1.25885 0.95037 1.02426 0.95790 1.70052 1.45408 1.34546 1.06822 0.85458 0.78589 0.78902 0.77814 1.20405 1.20108 1.18261 1.21211 0.93503 0.94459 0.88583 1.22583 1.08388 0.96180 0.94091 1.23110 0.96614 1.02827 0.96453 1.23023 0.92611 1.03597 1.00987 0.90881 0.91959 0.94103 0.88472 0.93027 0.90664 0.94690 0.84003 0.90415 0.98962 0.96255 0.92355 0.91286 0.88321 0.90689 0.88215 0.86874 0.87448 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.17 71.98 0.66 -1.80 16 2 C -0.06 -1.07 3.07 -10.80 -0.03 -1.10 16 3 C -0.15 -3.05 9.03 71.98 0.65 -2.40 16 4 C -0.12 -3.27 4.66 -10.79 -0.05 -3.32 16 5 H 0.08 2.72 7.64 -2.39 -0.02 2.70 16 6 C -0.12 -2.82 9.88 30.58 0.30 -2.52 16 7 C -0.18 -5.44 4.49 -11.55 -0.05 -5.49 16 8 H 0.14 3.41 5.91 -2.39 -0.01 3.40 16 9 C 0.52 23.36 7.46 87.65 0.65 24.02 16 10 O -0.61 -33.75 15.84 -3.05 -0.05 -33.80 16 11 N -0.60 -26.86 2.46 -826.14 -2.03 -28.89 16 12 C 0.26 15.04 5.16 85.63 0.44 15.48 16 13 C -0.54 -32.69 9.39 25.60 0.24 -32.45 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.45 5.46 84.65 0.46 0.91 16 16 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 17 Si 0.97 46.12 29.54 68.60 2.03 48.14 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 21 C 0.14 4.80 5.52 86.38 0.48 5.28 16 22 C -0.19 -5.38 6.01 -10.79 -0.06 -5.44 16 23 C -0.15 -2.88 10.18 30.59 0.31 -2.57 16 24 C -0.16 -3.32 10.25 30.60 0.31 -3.01 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 1.37 7.90 -2.39 -0.02 1.35 16 29 H 0.05 1.09 7.29 -2.39 -0.02 1.08 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.14 2.08 8.05 -2.39 -0.02 2.06 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 35 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 38 H 0.10 2.59 5.73 -2.38 -0.01 2.57 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 1.68 8.03 -2.39 -0.02 1.66 16 42 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -76.83 353.82 5.50 -71.33 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.96 Total: 15.24 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.31 Total: -14.42 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -1.74 Total: -86.50 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.05 Total: -33.80 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.83 5.50 -71.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185315093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.925 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds