Wall clock time and date at job start Mon Mar 30 2020 07:21:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47495 * 2 1
4 4 C 1.53002 * 109.47182 * 120.00088 * 2 1 3
5 5 H 1.09004 * 115.56068 * 274.30718 * 4 2 1
6 6 C 1.53000 * 117.49963 * 128.62091 * 4 2 1
7 7 C 1.53001 * 117.49811 * 59.99649 * 4 2 1
8 8 H 1.08998 * 117.49602 * 359.97438 * 7 4 2
9 9 C 1.50696 * 117.49889 * 214.98033 * 7 4 2
10 10 O 1.21296 * 120.00070 * 350.59957 * 9 7 4
11 11 N 1.34775 * 120.00030 * 170.59613 * 9 7 4
12 12 C 1.37099 * 120.00137 * 355.67386 * 11 9 7
13 13 H 1.07999 * 119.99947 * 231.58463 * 12 11 9
14 14 C 1.38950 * 119.99889 * 51.30987 * 12 11 9
15 15 N 1.31417 * 120.00161 * 21.44958 * 14 12 11
16 16 Si 1.86805 * 120.00165 * 201.45218 * 14 12 11
17 17 H 1.48498 * 109.46810 * 90.00254 * 16 14 12
18 18 H 1.48500 * 109.47135 * 210.00119 * 16 14 12
19 19 H 1.48495 * 109.46814 * 330.00129 * 16 14 12
20 20 C 1.46500 * 120.00244 * 175.66771 * 11 9 7
21 21 C 1.54262 * 110.03557 * 237.91524 * 20 11 9
22 22 C 1.54967 * 104.15764 * 217.13507 * 21 20 11
23 23 C 1.54893 * 102.77851 * 37.88794 * 22 21 20
24 24 C 1.53877 * 110.02947 * 120.68915 * 20 11 9
25 25 H 1.08998 * 109.46886 * 300.00424 * 1 2 3
26 26 H 1.09007 * 109.47026 * 59.99814 * 1 2 3
27 27 H 1.08993 * 109.47221 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.47184 * 240.00269 * 2 1 3
29 29 H 1.08997 * 109.47631 * 180.02562 * 3 2 1
30 30 H 1.09007 * 109.47135 * 300.00119 * 3 2 1
31 31 H 1.08998 * 109.47400 * 59.99890 * 3 2 1
32 32 H 1.08991 * 117.49876 * 145.02276 * 6 4 2
33 33 H 1.08999 * 117.49830 * 359.97438 * 6 4 2
34 34 H 0.97001 * 119.99680 * 3.28012 * 15 14 12
35 35 H 1.09001 * 110.01478 * 359.30473 * 20 11 9
36 36 H 1.08992 * 110.48473 * 335.77687 * 21 20 11
37 37 H 1.08996 * 110.49135 * 98.43176 * 21 20 11
38 38 H 1.08996 * 110.72223 * 279.57436 * 22 21 20
39 39 H 1.09000 * 110.92564 * 156.29300 * 22 21 20
40 40 H 1.09001 * 110.48940 * 203.40711 * 23 22 21
41 41 H 1.08998 * 110.48867 * 80.75692 * 23 22 21
42 42 H 1.09005 * 110.03429 * 238.57109 * 24 20 11
43 43 H 1.08996 * 110.03476 * 0.02562 * 24 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 2.1271 -0.1061 2.1449
6 6 3.0741 -1.8314 1.0514
7 6 1.6356 -2.1852 1.4343
8 1 1.0059 -2.6343 0.6663
9 6 1.3883 -2.6663 2.8408
10 8 1.6743 -1.9582 3.7831
11 7 0.8493 -3.8835 3.0517
12 6 0.4441 -4.6475 1.9879
13 1 -0.5515 -5.0657 1.9715
14 6 1.3125 -4.8790 0.9281
15 7 2.6089 -4.7501 1.1006
16 14 0.6371 -5.3733 -0.7420
17 1 0.3727 -4.1553 -1.5492
18 1 1.6289 -6.2268 -1.4441
19 1 -0.6271 -6.1308 -0.5601
20 6 0.6965 -4.3903 4.4177
21 6 1.4494 -5.7277 4.5726
22 6 0.5411 -6.5682 5.5054
23 6 -0.8832 -6.1885 5.0297
24 6 -0.7860 -4.6827 4.7086
25 1 -0.3633 0.5139 0.8899
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 -1.0276 0.0005
28 1 1.8933 -0.5138 -0.8900
29 1 3.1300 1.4425 -0.0005
30 1 1.6767 1.9563 -0.8900
31 1 1.6768 1.9563 0.8899
32 1 3.8415 -1.9466 1.8167
33 1 3.3908 -2.0482 0.0312
34 1 2.9627 -4.5400 1.9790
35 1 1.0801 -3.6610 5.1313
36 1 1.5598 -6.2175 3.6052
37 1 2.4241 -5.5658 5.0328
38 1 0.6892 -6.2834 6.5470
39 1 0.7227 -7.6342 5.3684
40 1 -1.6097 -6.3632 5.8233
41 1 -1.1500 -6.7527 4.1360
42 1 -1.1215 -4.0961 5.5639
43 1 -1.3916 -4.4481 3.8333
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000185479904.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:21:43
Heat of formation + Delta-G solvation = -36.872541 kcal
Electronic energy + Delta-G solvation = -21666.014128 eV
Core-core repulsion = 18710.856108 eV
Total energy + Delta-G solvation = -2955.158020 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-39.37410 -37.62584 -36.07801 -34.27720 -32.63124 -31.06821 -28.04697 -27.19769
-26.80522 -24.55753 -23.17556 -22.11925 -20.11298 -19.61773 -19.46088 -18.74204
-16.92917 -15.99565 -15.19147 -14.80516 -14.44987 -14.06239 -13.90712 -13.75337
-13.57608 -12.78734 -12.67295 -12.66303 -12.13139 -11.89537 -11.69759 -11.52806
-11.10983 -11.00734 -10.83749 -10.75076 -10.57042 -10.53125 -10.46448 -10.31002
-10.20312 -10.12142 -10.06250 -9.57030 -9.31267 -9.24395 -8.62155 -8.31485
-7.51720 -6.58040 -4.11125 3.27025 3.29968 3.46326 3.79341 4.19150
4.57476 4.80856 5.05253 5.24144 5.28289 5.32067 5.35051 5.50647
5.59779 5.86861 5.90616 5.99555 6.01349 6.03919 6.14907 6.16387
6.19294 6.20956 6.24263 6.27918 6.32314 6.38683 6.43163 6.47423
6.52474 6.62449 6.65077 6.67888 6.74221 6.84717 6.98454 7.03175
7.14444 7.18308 7.81977 8.24827 8.38366 9.17874 9.50322 9.94194
10.68406
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.018428 B = 0.007687 C = 0.006369
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1519.085249 B = 3641.706510 C = 4394.978046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.063 4.063
3 C -0.140 4.140
4 C -0.147 4.147
5 H 0.103 0.897
6 C -0.124 4.124
7 C -0.130 4.130
8 H 0.122 0.878
9 C 0.519 3.481
10 O -0.611 6.611
11 N -0.450 5.450
12 C -0.427 4.427
13 H 0.073 0.927
14 C 0.022 3.978
15 N -0.859 5.859
16 Si 1.066 2.934
17 H -0.282 1.282
18 H -0.283 1.283
19 H -0.284 1.284
20 C 0.130 3.870
21 C -0.124 4.124
22 C -0.121 4.121
23 C -0.116 4.116
24 C -0.125 4.125
25 H 0.052 0.948
26 H 0.047 0.953
27 H 0.059 0.941
28 H 0.067 0.933
29 H 0.053 0.947
30 H 0.049 0.951
31 H 0.052 0.948
32 H 0.082 0.918
33 H 0.092 0.908
34 H 0.276 0.724
35 H 0.076 0.924
36 H 0.087 0.913
37 H 0.049 0.951
38 H 0.056 0.944
39 H 0.058 0.942
40 H 0.052 0.948
41 H 0.065 0.935
42 H 0.051 0.949
43 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.279 2.175 -0.765 4.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.082 4.082
3 C -0.197 4.197
4 C -0.166 4.166
5 H 0.121 0.879
6 C -0.162 4.162
7 C -0.151 4.151
8 H 0.140 0.860
9 C 0.309 3.691
10 O -0.497 6.497
11 N -0.169 5.169
12 C -0.555 4.555
13 H 0.090 0.910
14 C -0.189 4.189
15 N -0.490 5.490
16 Si 0.893 3.107
17 H -0.208 1.208
18 H -0.208 1.208
19 H -0.210 1.210
20 C 0.026 3.974
21 C -0.163 4.163
22 C -0.158 4.158
23 C -0.154 4.154
24 C -0.163 4.163
25 H 0.071 0.929
26 H 0.066 0.934
27 H 0.078 0.922
28 H 0.086 0.914
29 H 0.072 0.928
30 H 0.068 0.932
31 H 0.071 0.929
32 H 0.101 0.899
33 H 0.110 0.890
34 H 0.088 0.912
35 H 0.094 0.906
36 H 0.105 0.895
37 H 0.068 0.932
38 H 0.075 0.925
39 H 0.077 0.923
40 H 0.071 0.929
41 H 0.084 0.916
42 H 0.070 0.930
43 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -2.700 2.134 -1.833 3.900
hybrid contribution -0.425 0.057 1.590 1.647
sum -3.125 2.191 -0.243 3.825
Atomic orbital electron populations
1.21798 0.95371 1.02219 1.00739 1.20658 0.95520 0.95386 0.96616
1.21780 1.00864 0.96038 1.01049 1.22481 1.04348 0.90922 0.98876
0.87915 1.22655 0.91463 1.00395 1.01702 1.21983 1.00010 0.95948
0.97140 0.85982 1.19754 0.79134 0.81029 0.89148 1.90486 1.57939
1.56652 1.44644 1.43490 1.55879 1.13050 1.04499 1.19941 1.00363
1.36354 0.98806 0.90959 1.26354 0.94139 0.94759 1.03662 1.70661
1.11929 1.39091 1.27340 0.83522 0.75377 0.77160 0.74629 1.20810
1.20813 1.21016 1.21607 0.93958 0.94890 0.86898 1.22621 0.97024
0.96125 1.00496 1.22423 0.95701 0.99127 0.98598 1.22256 0.96366
0.96610 1.00117 1.22374 0.97752 0.95450 1.00766 0.92919 0.93428
0.92160 0.91443 0.92829 0.93230 0.92899 0.89940 0.89002 0.91228
0.90591 0.89477 0.93173 0.92476 0.92293 0.92879 0.91614 0.93013
0.90999
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.25 9.03 37.16 0.34 -1.92 16
2 C -0.06 -1.03 3.07 -90.62 -0.28 -1.31 16
3 C -0.14 -1.90 9.18 37.16 0.34 -1.56 16
4 C -0.15 -2.90 4.66 -90.62 -0.42 -3.33 16
5 H 0.10 2.16 7.67 -51.93 -0.40 1.76 16
6 C -0.12 -2.63 8.90 -26.73 -0.24 -2.86 16
7 C -0.13 -2.98 3.05 -91.77 -0.28 -3.26 16
8 H 0.12 2.91 5.34 -51.93 -0.28 2.63 16
9 C 0.52 13.30 6.49 -10.99 -0.07 13.23 16
10 O -0.61 -16.84 15.66 5.54 0.09 -16.76 16
11 N -0.45 -11.09 2.06 -106.55 -0.22 -11.31 16
12 C -0.43 -10.55 6.84 -14.93 -0.10 -10.65 16
13 H 0.07 1.81 7.23 -52.49 -0.38 1.43 16
14 C 0.02 0.54 3.21 -17.47 -0.06 0.48 16
15 N -0.86 -22.35 11.49 55.50 0.64 -21.71 16
16 Si 1.07 22.18 29.62 -169.99 -5.03 17.14 16
17 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16
18 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16
19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16
20 C 0.13 2.89 3.29 -66.81 -0.22 2.67 16
21 C -0.12 -2.53 6.42 -25.03 -0.16 -2.69 16
22 C -0.12 -1.99 6.91 -24.69 -0.17 -2.16 16
23 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16
24 C -0.12 -2.40 6.25 -25.61 -0.16 -2.56 16
25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
26 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16
27 H 0.06 1.03 7.28 -51.93 -0.38 0.65 16
28 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16
29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16
31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16
33 H 0.09 1.85 8.05 -51.93 -0.42 1.44 16
34 H 0.28 7.60 7.45 -40.82 -0.30 7.29 16
35 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16
36 H 0.09 2.00 7.03 -51.93 -0.37 1.63 16
37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
43 H 0.07 1.48 6.93 -51.93 -0.36 1.12 16
LS Contribution 333.80 15.07 5.03 5.03
Total: -1.00 -27.22 333.80 -8.67 -35.90
By element:
Atomic # 1 Polarization: 17.23 SS G_CDS: -7.52 Total: 9.71 kcal
Atomic # 6 Polarization: -16.34 SS G_CDS: -1.65 Total: -18.00 kcal
Atomic # 7 Polarization: -33.44 SS G_CDS: 0.42 Total: -33.02 kcal
Atomic # 8 Polarization: -16.84 SS G_CDS: 0.09 Total: -16.76 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.14 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -27.22 -8.67 -35.90 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000185479904.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.975 kcal
(2) G-P(sol) polarization free energy of solvation -27.225 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds