Wall clock time and date at job start Mon Mar 30 2020 07:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 C 1.53002 * 109.47182 * 120.00088 * 2 1 3 5 5 H 1.09004 * 115.56068 * 274.30718 * 4 2 1 6 6 C 1.53000 * 117.49963 * 128.62091 * 4 2 1 7 7 C 1.53001 * 117.49811 * 59.99649 * 4 2 1 8 8 H 1.08998 * 117.49602 * 359.97438 * 7 4 2 9 9 C 1.50696 * 117.49889 * 214.98033 * 7 4 2 10 10 O 1.21296 * 120.00070 * 350.59957 * 9 7 4 11 11 N 1.34775 * 120.00030 * 170.59613 * 9 7 4 12 12 C 1.37099 * 120.00137 * 355.67386 * 11 9 7 13 13 H 1.07999 * 119.99947 * 231.58463 * 12 11 9 14 14 C 1.38950 * 119.99889 * 51.30987 * 12 11 9 15 15 N 1.31417 * 120.00161 * 21.44958 * 14 12 11 16 16 Si 1.86805 * 120.00165 * 201.45218 * 14 12 11 17 17 H 1.48498 * 109.46810 * 90.00254 * 16 14 12 18 18 H 1.48500 * 109.47135 * 210.00119 * 16 14 12 19 19 H 1.48495 * 109.46814 * 330.00129 * 16 14 12 20 20 C 1.46500 * 120.00244 * 175.66771 * 11 9 7 21 21 C 1.54262 * 110.03557 * 237.91524 * 20 11 9 22 22 C 1.54967 * 104.15764 * 217.13507 * 21 20 11 23 23 C 1.54893 * 102.77851 * 37.88794 * 22 21 20 24 24 C 1.53877 * 110.02947 * 120.68915 * 20 11 9 25 25 H 1.08998 * 109.46886 * 300.00424 * 1 2 3 26 26 H 1.09007 * 109.47026 * 59.99814 * 1 2 3 27 27 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47184 * 240.00269 * 2 1 3 29 29 H 1.08997 * 109.47631 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47135 * 300.00119 * 3 2 1 31 31 H 1.08998 * 109.47400 * 59.99890 * 3 2 1 32 32 H 1.08991 * 117.49876 * 145.02276 * 6 4 2 33 33 H 1.08999 * 117.49830 * 359.97438 * 6 4 2 34 34 H 0.97001 * 119.99680 * 3.28012 * 15 14 12 35 35 H 1.09001 * 110.01478 * 359.30473 * 20 11 9 36 36 H 1.08992 * 110.48473 * 335.77687 * 21 20 11 37 37 H 1.08996 * 110.49135 * 98.43176 * 21 20 11 38 38 H 1.08996 * 110.72223 * 279.57436 * 22 21 20 39 39 H 1.09000 * 110.92564 * 156.29300 * 22 21 20 40 40 H 1.09001 * 110.48940 * 203.40711 * 23 22 21 41 41 H 1.08998 * 110.48867 * 80.75692 * 23 22 21 42 42 H 1.09005 * 110.03429 * 238.57109 * 24 20 11 43 43 H 1.08996 * 110.03476 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1449 6 6 3.0741 -1.8314 1.0514 7 6 1.6356 -2.1852 1.4343 8 1 1.0059 -2.6343 0.6663 9 6 1.3883 -2.6663 2.8408 10 8 1.6743 -1.9582 3.7831 11 7 0.8493 -3.8835 3.0517 12 6 0.4441 -4.6475 1.9879 13 1 -0.5515 -5.0657 1.9715 14 6 1.3125 -4.8790 0.9281 15 7 2.6089 -4.7501 1.1006 16 14 0.6371 -5.3733 -0.7420 17 1 0.3727 -4.1553 -1.5492 18 1 1.6289 -6.2268 -1.4441 19 1 -0.6271 -6.1308 -0.5601 20 6 0.6965 -4.3903 4.4177 21 6 1.4494 -5.7277 4.5726 22 6 0.5411 -6.5682 5.5054 23 6 -0.8832 -6.1885 5.0297 24 6 -0.7860 -4.6827 4.7086 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.8415 -1.9466 1.8167 33 1 3.3908 -2.0482 0.0312 34 1 2.9627 -4.5400 1.9790 35 1 1.0801 -3.6610 5.1313 36 1 1.5598 -6.2175 3.6052 37 1 2.4241 -5.5658 5.0328 38 1 0.6892 -6.2834 6.5470 39 1 0.7227 -7.6342 5.3684 40 1 -1.6097 -6.3632 5.8233 41 1 -1.1500 -6.7527 4.1360 42 1 -1.1215 -4.0961 5.5639 43 1 -1.3916 -4.4481 3.8333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185479904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:43 Heat of formation + Delta-G solvation = -36.872541 kcal Electronic energy + Delta-G solvation = -21666.014128 eV Core-core repulsion = 18710.856108 eV Total energy + Delta-G solvation = -2955.158020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.37410 -37.62584 -36.07801 -34.27720 -32.63124 -31.06821 -28.04697 -27.19769 -26.80522 -24.55753 -23.17556 -22.11925 -20.11298 -19.61773 -19.46088 -18.74204 -16.92917 -15.99565 -15.19147 -14.80516 -14.44987 -14.06239 -13.90712 -13.75337 -13.57608 -12.78734 -12.67295 -12.66303 -12.13139 -11.89537 -11.69759 -11.52806 -11.10983 -11.00734 -10.83749 -10.75076 -10.57042 -10.53125 -10.46448 -10.31002 -10.20312 -10.12142 -10.06250 -9.57030 -9.31267 -9.24395 -8.62155 -8.31485 -7.51720 -6.58040 -4.11125 3.27025 3.29968 3.46326 3.79341 4.19150 4.57476 4.80856 5.05253 5.24144 5.28289 5.32067 5.35051 5.50647 5.59779 5.86861 5.90616 5.99555 6.01349 6.03919 6.14907 6.16387 6.19294 6.20956 6.24263 6.27918 6.32314 6.38683 6.43163 6.47423 6.52474 6.62449 6.65077 6.67888 6.74221 6.84717 6.98454 7.03175 7.14444 7.18308 7.81977 8.24827 8.38366 9.17874 9.50322 9.94194 10.68406 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.007687 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.085249 B = 3641.706510 C = 4394.978046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.147 4.147 5 H 0.103 0.897 6 C -0.124 4.124 7 C -0.130 4.130 8 H 0.122 0.878 9 C 0.519 3.481 10 O -0.611 6.611 11 N -0.450 5.450 12 C -0.427 4.427 13 H 0.073 0.927 14 C 0.022 3.978 15 N -0.859 5.859 16 Si 1.066 2.934 17 H -0.282 1.282 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.130 3.870 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.125 4.125 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.276 0.724 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 2.175 -0.765 4.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.197 4.197 4 C -0.166 4.166 5 H 0.121 0.879 6 C -0.162 4.162 7 C -0.151 4.151 8 H 0.140 0.860 9 C 0.309 3.691 10 O -0.497 6.497 11 N -0.169 5.169 12 C -0.555 4.555 13 H 0.090 0.910 14 C -0.189 4.189 15 N -0.490 5.490 16 Si 0.893 3.107 17 H -0.208 1.208 18 H -0.208 1.208 19 H -0.210 1.210 20 C 0.026 3.974 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.700 2.134 -1.833 3.900 hybrid contribution -0.425 0.057 1.590 1.647 sum -3.125 2.191 -0.243 3.825 Atomic orbital electron populations 1.21798 0.95371 1.02219 1.00739 1.20658 0.95520 0.95386 0.96616 1.21780 1.00864 0.96038 1.01049 1.22481 1.04348 0.90922 0.98876 0.87915 1.22655 0.91463 1.00395 1.01702 1.21983 1.00010 0.95948 0.97140 0.85982 1.19754 0.79134 0.81029 0.89148 1.90486 1.57939 1.56652 1.44644 1.43490 1.55879 1.13050 1.04499 1.19941 1.00363 1.36354 0.98806 0.90959 1.26354 0.94139 0.94759 1.03662 1.70661 1.11929 1.39091 1.27340 0.83522 0.75377 0.77160 0.74629 1.20810 1.20813 1.21016 1.21607 0.93958 0.94890 0.86898 1.22621 0.97024 0.96125 1.00496 1.22423 0.95701 0.99127 0.98598 1.22256 0.96366 0.96610 1.00117 1.22374 0.97752 0.95450 1.00766 0.92919 0.93428 0.92160 0.91443 0.92829 0.93230 0.92899 0.89940 0.89002 0.91228 0.90591 0.89477 0.93173 0.92476 0.92293 0.92879 0.91614 0.93013 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.03 37.16 0.34 -1.92 16 2 C -0.06 -1.03 3.07 -90.62 -0.28 -1.31 16 3 C -0.14 -1.90 9.18 37.16 0.34 -1.56 16 4 C -0.15 -2.90 4.66 -90.62 -0.42 -3.33 16 5 H 0.10 2.16 7.67 -51.93 -0.40 1.76 16 6 C -0.12 -2.63 8.90 -26.73 -0.24 -2.86 16 7 C -0.13 -2.98 3.05 -91.77 -0.28 -3.26 16 8 H 0.12 2.91 5.34 -51.93 -0.28 2.63 16 9 C 0.52 13.30 6.49 -10.99 -0.07 13.23 16 10 O -0.61 -16.84 15.66 5.54 0.09 -16.76 16 11 N -0.45 -11.09 2.06 -106.55 -0.22 -11.31 16 12 C -0.43 -10.55 6.84 -14.93 -0.10 -10.65 16 13 H 0.07 1.81 7.23 -52.49 -0.38 1.43 16 14 C 0.02 0.54 3.21 -17.47 -0.06 0.48 16 15 N -0.86 -22.35 11.49 55.50 0.64 -21.71 16 16 Si 1.07 22.18 29.62 -169.99 -5.03 17.14 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 C 0.13 2.89 3.29 -66.81 -0.22 2.67 16 21 C -0.12 -2.53 6.42 -25.03 -0.16 -2.69 16 22 C -0.12 -1.99 6.91 -24.69 -0.17 -2.16 16 23 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 24 C -0.12 -2.40 6.25 -25.61 -0.16 -2.56 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.06 1.03 7.28 -51.93 -0.38 0.65 16 28 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.09 1.85 8.05 -51.93 -0.42 1.44 16 34 H 0.28 7.60 7.45 -40.82 -0.30 7.29 16 35 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 36 H 0.09 2.00 7.03 -51.93 -0.37 1.63 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.48 6.93 -51.93 -0.36 1.12 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -27.22 333.80 -8.67 -35.90 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.52 Total: 9.71 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.65 Total: -18.00 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.42 Total: -33.02 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.09 Total: -16.76 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.22 -8.67 -35.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185479904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.975 kcal (2) G-P(sol) polarization free energy of solvation -27.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds