Wall clock time and date at job start Mon Mar 30 2020 07:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 C 1.53002 * 109.47182 * 120.00088 * 2 1 3 5 5 H 1.09004 * 115.56068 * 274.30718 * 4 2 1 6 6 C 1.53000 * 117.49963 * 128.62091 * 4 2 1 7 7 C 1.53001 * 117.49811 * 59.99649 * 4 2 1 8 8 H 1.08998 * 117.49602 * 359.97438 * 7 4 2 9 9 C 1.50696 * 117.49889 * 214.98033 * 7 4 2 10 10 O 1.21296 * 120.00070 * 350.59957 * 9 7 4 11 11 N 1.34775 * 120.00030 * 170.59613 * 9 7 4 12 12 C 1.37099 * 120.00137 * 355.67386 * 11 9 7 13 13 H 1.07999 * 119.99947 * 231.58463 * 12 11 9 14 14 C 1.38950 * 119.99889 * 51.30987 * 12 11 9 15 15 N 1.31417 * 120.00161 * 21.44958 * 14 12 11 16 16 Si 1.86805 * 120.00165 * 201.45218 * 14 12 11 17 17 H 1.48498 * 109.46810 * 90.00254 * 16 14 12 18 18 H 1.48500 * 109.47135 * 210.00119 * 16 14 12 19 19 H 1.48495 * 109.46814 * 330.00129 * 16 14 12 20 20 C 1.46500 * 120.00244 * 175.66771 * 11 9 7 21 21 C 1.54262 * 110.03557 * 237.91524 * 20 11 9 22 22 C 1.54967 * 104.15764 * 217.13507 * 21 20 11 23 23 C 1.54893 * 102.77851 * 37.88794 * 22 21 20 24 24 C 1.53877 * 110.02947 * 120.68915 * 20 11 9 25 25 H 1.08998 * 109.46886 * 300.00424 * 1 2 3 26 26 H 1.09007 * 109.47026 * 59.99814 * 1 2 3 27 27 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47184 * 240.00269 * 2 1 3 29 29 H 1.08997 * 109.47631 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47135 * 300.00119 * 3 2 1 31 31 H 1.08998 * 109.47400 * 59.99890 * 3 2 1 32 32 H 1.08991 * 117.49876 * 145.02276 * 6 4 2 33 33 H 1.08999 * 117.49830 * 359.97438 * 6 4 2 34 34 H 0.97001 * 119.99680 * 3.28012 * 15 14 12 35 35 H 1.09001 * 110.01478 * 359.30473 * 20 11 9 36 36 H 1.08992 * 110.48473 * 335.77687 * 21 20 11 37 37 H 1.08996 * 110.49135 * 98.43176 * 21 20 11 38 38 H 1.08996 * 110.72223 * 279.57436 * 22 21 20 39 39 H 1.09000 * 110.92564 * 156.29300 * 22 21 20 40 40 H 1.09001 * 110.48940 * 203.40711 * 23 22 21 41 41 H 1.08998 * 110.48867 * 80.75692 * 23 22 21 42 42 H 1.09005 * 110.03429 * 238.57109 * 24 20 11 43 43 H 1.08996 * 110.03476 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1449 6 6 3.0741 -1.8314 1.0514 7 6 1.6356 -2.1852 1.4343 8 1 1.0059 -2.6343 0.6663 9 6 1.3883 -2.6663 2.8408 10 8 1.6743 -1.9582 3.7831 11 7 0.8493 -3.8835 3.0517 12 6 0.4441 -4.6475 1.9879 13 1 -0.5515 -5.0657 1.9715 14 6 1.3125 -4.8790 0.9281 15 7 2.6089 -4.7501 1.1006 16 14 0.6371 -5.3733 -0.7420 17 1 0.3727 -4.1553 -1.5492 18 1 1.6289 -6.2268 -1.4441 19 1 -0.6271 -6.1308 -0.5601 20 6 0.6965 -4.3903 4.4177 21 6 1.4494 -5.7277 4.5726 22 6 0.5411 -6.5682 5.5054 23 6 -0.8832 -6.1885 5.0297 24 6 -0.7860 -4.6827 4.7086 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.8415 -1.9466 1.8167 33 1 3.3908 -2.0482 0.0312 34 1 2.9627 -4.5400 1.9790 35 1 1.0801 -3.6610 5.1313 36 1 1.5598 -6.2175 3.6052 37 1 2.4241 -5.5658 5.0328 38 1 0.6892 -6.2834 6.5470 39 1 0.7227 -7.6342 5.3684 40 1 -1.6097 -6.3632 5.8233 41 1 -1.1500 -6.7527 4.1360 42 1 -1.1215 -4.0961 5.5639 43 1 -1.3916 -4.4481 3.8333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185479904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:43 Heat of formation + Delta-G solvation = -49.143404 kcal Electronic energy + Delta-G solvation = -21666.546233 eV Core-core repulsion = 18710.856108 eV Total energy + Delta-G solvation = -2955.690125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23747 -39.24000 -37.77781 -36.18007 -34.08761 -32.96180 -29.60492 -28.85716 -27.98576 -26.51881 -24.87872 -23.69318 -21.62043 -21.25035 -21.21878 -20.39249 -18.80150 -17.80599 -17.05933 -16.38003 -15.96028 -15.80268 -15.57366 -15.43300 -15.00820 -14.42702 -14.34317 -13.95591 -13.79091 -13.49771 -13.26672 -12.98045 -12.82007 -12.63762 -12.40902 -12.10139 -11.99869 -11.99097 -11.95717 -11.93177 -11.91554 -11.53968 -11.48055 -11.36760 -11.02464 -10.94875 -10.49631 -10.26982 -9.47610 -8.58380 -6.12380 1.59781 1.60664 1.82739 1.87203 2.43787 2.78764 3.03073 3.22524 3.72618 3.77085 3.82760 4.01623 4.06237 4.15127 4.24486 4.43634 4.46323 4.51658 4.55950 4.65724 4.67326 4.70490 4.71978 4.81431 4.85689 4.91111 4.93421 5.00064 5.05159 5.05685 5.14355 5.19841 5.26682 5.31220 5.32793 5.39111 5.47422 5.49329 5.57142 5.85063 6.16699 6.41415 7.20519 7.52092 7.96729 8.64945 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.007687 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.085249 B = 3641.706510 C = 4394.978046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.122 4.122 5 H 0.087 0.913 6 C -0.120 4.120 7 C -0.146 4.146 8 H 0.114 0.886 9 C 0.499 3.501 10 O -0.644 6.644 11 N -0.454 5.454 12 C -0.431 4.431 13 H 0.070 0.930 14 C -0.005 4.005 15 N -0.870 5.870 16 Si 1.107 2.893 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.269 1.269 20 C 0.117 3.883 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.120 4.120 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.256 0.744 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 2.034 -1.711 5.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.192 4.192 4 C -0.141 4.141 5 H 0.105 0.895 6 C -0.158 4.158 7 C -0.167 4.167 8 H 0.132 0.868 9 C 0.291 3.709 10 O -0.533 6.533 11 N -0.172 5.172 12 C -0.559 4.559 13 H 0.088 0.912 14 C -0.212 4.212 15 N -0.501 5.501 16 Si 0.928 3.072 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.194 1.194 20 C 0.013 3.987 21 C -0.159 4.159 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.158 4.158 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.983 1.978 -2.763 5.235 hybrid contribution -0.017 0.101 1.953 1.956 sum -3.999 2.079 -0.810 4.580 Atomic orbital electron populations 1.21782 0.94753 1.01308 1.02077 1.20732 0.96016 0.96767 0.94545 1.21744 1.01106 0.94049 1.02327 1.22569 1.02087 0.89421 0.99999 0.89468 1.22596 0.90357 1.01326 1.01544 1.21844 1.00949 0.98612 0.95282 0.86826 1.20322 0.79260 0.81212 0.90084 1.90440 1.59586 1.57518 1.45761 1.43698 1.55082 1.12831 1.05578 1.20025 1.00301 1.36245 0.99282 0.91233 1.27527 0.93625 0.93789 1.06243 1.70788 1.12838 1.40578 1.25919 0.83017 0.75342 0.77552 0.71269 1.19243 1.21125 1.19374 1.21857 0.96452 0.95068 0.85295 1.22524 0.97616 0.95658 1.00060 1.22405 0.94258 0.99473 0.98528 1.22228 0.97247 0.93922 1.01065 1.22321 0.94902 0.98086 1.00534 0.93338 0.90343 0.94187 0.90877 0.92500 0.90595 0.92990 0.91821 0.87842 0.93375 0.92891 0.92388 0.93850 0.90434 0.90303 0.89389 0.92201 0.91578 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.03 71.98 0.65 -3.55 16 2 C -0.06 -1.92 3.07 -10.79 -0.03 -1.95 16 3 C -0.14 -3.32 9.18 71.98 0.66 -2.66 16 4 C -0.12 -4.84 4.66 -10.79 -0.05 -4.89 16 5 H 0.09 3.75 7.67 -2.39 -0.02 3.73 16 6 C -0.12 -5.20 8.90 30.60 0.27 -4.92 16 7 C -0.15 -6.87 3.05 -11.54 -0.04 -6.90 16 8 H 0.11 5.50 5.34 -2.39 -0.01 5.49 16 9 C 0.50 26.73 6.49 87.66 0.57 27.30 16 10 O -0.64 -37.27 15.66 -3.08 -0.05 -37.32 16 11 N -0.45 -23.21 2.06 -609.38 -1.25 -24.47 16 12 C -0.43 -21.73 6.84 84.04 0.57 -21.16 16 13 H 0.07 3.51 7.23 -2.91 -0.02 3.49 16 14 C -0.01 -0.25 3.21 84.93 0.27 0.02 16 15 N -0.87 -46.24 11.49 21.66 0.25 -45.99 16 16 Si 1.11 43.96 29.62 68.60 2.03 45.99 16 17 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.29 -11.47 7.11 99.48 0.71 -10.77 16 19 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 20 C 0.12 5.33 3.29 45.71 0.15 5.48 16 21 C -0.12 -4.97 6.42 31.69 0.20 -4.76 16 22 C -0.11 -3.37 6.91 31.91 0.22 -3.14 16 23 C -0.11 -3.30 6.83 31.67 0.22 -3.08 16 24 C -0.12 -4.56 6.25 31.32 0.20 -4.37 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.04 1.33 7.28 -2.39 -0.02 1.31 16 28 H 0.07 2.20 7.90 -2.39 -0.02 2.18 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.10 4.17 8.05 -2.39 -0.02 4.15 16 34 H 0.26 14.69 7.45 -92.71 -0.69 14.00 16 35 H 0.05 2.62 6.95 -2.39 -0.02 2.61 16 36 H 0.06 2.73 7.03 -2.39 -0.02 2.71 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.05 2.22 6.93 -2.39 -0.02 2.20 16 Total: -1.00 -61.11 333.80 5.88 -55.22 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 1.04 Total: 35.15 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 3.87 Total: -28.58 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.00 Total: -70.46 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.05 Total: -37.32 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -61.11 5.88 -55.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185479904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.079 kcal (2) G-P(sol) polarization free energy of solvation -61.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds