Wall clock time and date at job start Mon Mar 30 2020 07:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47154 * 2 1 4 4 C 1.52999 * 109.47220 * 120.00380 * 2 1 3 5 5 N 1.46501 * 109.47359 * 65.83464 * 4 2 1 6 6 C 1.46501 * 119.99654 * 65.64528 * 5 4 2 7 7 C 1.50694 * 109.46974 * 90.00097 * 6 5 4 8 8 H 1.07995 * 120.00361 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00469 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99838 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47313 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47134 * 120.00271 * 11 9 7 14 14 H 1.48498 * 109.47286 * 240.00418 * 11 9 7 15 15 C 1.34776 * 120.00394 * 245.64908 * 5 4 2 16 16 O 1.21277 * 120.00030 * 175.29010 * 15 5 4 17 17 C 1.50701 * 119.99679 * 355.28703 * 15 5 4 18 18 H 1.09003 * 110.67180 * 338.67729 * 17 15 5 19 19 C 1.54888 * 110.75352 * 215.44215 * 17 15 5 20 20 C 1.54267 * 104.19353 * 279.62551 * 19 17 15 21 21 H 1.08997 * 117.41023 * 116.37525 * 20 19 17 22 22 C 1.53001 * 118.20093 * 271.00113 * 20 19 17 23 23 C 1.53876 * 106.60045 * 336.39308 * 20 19 17 24 24 H 1.09000 * 121.33367 * 138.63114 * 23 20 19 25 25 C 1.54268 * 106.59906 * 359.97438 * 23 20 19 26 26 H 1.09002 * 109.47303 * 192.46474 * 1 2 3 27 27 H 1.09000 * 109.47147 * 312.46621 * 1 2 3 28 28 H 1.09001 * 109.47212 * 72.46469 * 1 2 3 29 29 H 1.09001 * 109.46717 * 240.00282 * 2 1 3 30 30 H 1.09000 * 109.47456 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47549 * 300.00331 * 3 2 1 32 32 H 1.09003 * 109.47310 * 60.00016 * 3 2 1 33 33 H 1.08993 * 109.47034 * 185.83984 * 4 2 1 34 34 H 1.09003 * 109.47086 * 305.83584 * 4 2 1 35 35 H 1.09001 * 109.47022 * 210.00179 * 6 5 4 36 36 H 1.09000 * 109.47307 * 329.99742 * 6 5 4 37 37 H 0.96998 * 120.00171 * 179.97438 * 10 9 7 38 38 H 1.08990 * 110.49159 * 38.30764 * 19 17 15 39 39 H 1.09003 * 110.48634 * 160.95259 * 19 17 15 40 40 H 1.08997 * 117.46317 * 201.21963 * 22 20 19 41 41 H 1.09007 * 117.45881 * 346.02031 * 22 20 19 42 42 H 1.09004 * 110.48806 * 264.93613 * 25 23 20 43 43 H 1.08994 * 110.48626 * 142.28944 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6697 -2.1371 1.1810 6 6 2.2471 -2.9961 0.1441 7 6 3.5224 -3.6141 0.6566 8 1 3.8680 -3.3900 1.6549 9 6 4.2473 -4.4667 -0.1487 10 7 3.8263 -4.7402 -1.3642 11 14 5.8285 -5.2323 0.4862 12 1 6.0814 -4.7673 1.8737 13 1 5.7011 -6.7118 0.4760 14 1 6.9599 -4.8269 -0.3860 15 6 0.7979 -2.6494 2.0720 16 8 0.4258 -3.7986 1.9644 17 6 0.2856 -1.7941 3.2021 18 1 0.9607 -0.9590 3.3892 19 6 0.0895 -2.6396 4.4850 20 6 -1.2661 -3.3438 4.2704 21 1 -1.2616 -4.4319 4.2057 22 6 -2.5351 -2.6267 4.7355 23 6 -2.0529 -2.4857 3.2642 24 1 -2.6354 -2.9418 2.4638 25 6 -1.1482 -1.2895 2.9030 26 1 -0.3634 -1.0034 0.2218 27 1 -0.3633 0.6938 0.7581 28 1 -0.3634 0.3096 -0.9799 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1249 -0.6316 1.3030 34 1 1.5939 -0.2714 2.1361 35 1 1.5384 -3.7840 -0.1111 36 1 2.4629 -2.4003 -0.7427 37 1 4.3365 -5.3397 -1.9309 38 1 0.8892 -3.3735 4.5842 39 1 0.0501 -1.9959 5.3638 40 1 -3.4208 -3.2367 4.9130 41 1 -2.4140 -1.7704 5.3991 42 1 -1.3878 -0.4280 3.5264 43 1 -1.2513 -1.0383 1.8475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250589953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:46 Heat of formation + Delta-G solvation = -20.578569 kcal Electronic energy + Delta-G solvation = -21432.988164 eV Core-core repulsion = 18478.536704 eV Total energy + Delta-G solvation = -2954.451460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12808 -37.92305 -36.14041 -33.52445 -32.34723 -31.47387 -28.20406 -27.60133 -26.87329 -25.51526 -23.91004 -22.10224 -20.86636 -19.86283 -19.40829 -17.90476 -16.67579 -16.37248 -15.98413 -15.15736 -14.75219 -14.32087 -14.15346 -13.84534 -13.44618 -13.07740 -12.72891 -12.59642 -12.32622 -12.08518 -11.99315 -11.63658 -11.41243 -11.25813 -11.16845 -11.00995 -10.90344 -10.77635 -10.74407 -10.63354 -10.43453 -10.22787 -10.08320 -9.77829 -9.55237 -9.47520 -8.59781 -8.40825 -7.53371 -6.01742 -4.06035 3.30451 3.37578 3.40419 3.45410 3.87524 4.00074 4.46659 4.63539 4.84636 4.96982 5.10595 5.16019 5.22235 5.32505 5.41905 5.47381 5.51816 5.57798 5.64178 5.70259 5.78116 5.85179 5.86762 5.89294 5.93061 5.99701 6.04075 6.13563 6.21553 6.31700 6.35347 6.36529 6.43364 6.54802 6.58899 6.64159 7.16271 7.51600 7.62817 7.96004 8.28195 8.53573 8.94961 9.21873 9.59246 11.06188 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.006910 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.227400 B = 4051.303255 C = 5206.748446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.141 4.141 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.246 3.754 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.517 3.483 16 O -0.536 6.536 17 C -0.121 4.121 18 H 0.092 0.908 19 C -0.075 4.075 20 C -0.142 4.142 21 H 0.109 0.891 22 C -0.164 4.164 23 C -0.163 4.163 24 H 0.107 0.893 25 C -0.082 4.082 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 11.783 8.126 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.199 4.199 4 C -0.012 4.012 5 N -0.327 5.327 6 C 0.127 3.873 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.303 3.697 16 O -0.413 6.413 17 C -0.143 4.143 18 H 0.110 0.890 19 C -0.113 4.113 20 C -0.160 4.160 21 H 0.127 0.873 22 C -0.201 4.201 23 C -0.181 4.181 24 H 0.125 0.875 25 C -0.120 4.120 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.640 11.044 7.876 16.082 hybrid contribution 1.043 -0.502 0.125 1.164 sum -7.597 10.541 8.001 15.259 Atomic orbital electron populations 1.21915 0.95596 1.01809 1.00993 1.21495 0.95921 0.95893 1.00198 1.21758 1.01137 0.95752 1.01258 1.21605 1.00401 0.82023 0.97214 1.48185 1.43020 1.09308 1.32216 1.19215 0.93456 0.89477 0.85153 1.21484 1.07038 1.27340 1.00379 0.92535 1.24928 0.98064 0.96273 0.94858 1.69942 1.39187 1.36397 1.07894 0.86476 0.83084 0.79196 0.78868 1.19838 1.20926 1.20988 1.20027 0.79187 0.87612 0.82873 1.90639 1.57993 1.18321 1.74315 1.22589 0.97792 0.98565 0.95306 0.89015 1.21788 0.96263 0.97960 0.95316 1.23084 0.90626 0.98643 1.03622 0.87336 1.23470 0.97808 1.02587 0.96236 1.23501 1.02999 0.99531 0.92036 0.87484 1.21950 0.91576 0.96306 1.02159 0.92156 0.93116 0.93161 0.90093 0.92532 0.92864 0.93013 0.91275 0.90928 0.93974 0.95042 0.92845 0.90721 0.91329 0.88940 0.89342 0.91063 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.32 37.16 0.31 -1.66 16 2 C -0.12 -1.69 2.94 -90.62 -0.27 -1.96 16 3 C -0.14 -1.63 9.16 37.16 0.34 -1.29 16 4 C 0.11 1.83 5.08 -4.04 -0.02 1.81 16 5 N -0.60 -12.54 1.99 -175.06 -0.35 -12.89 16 6 C 0.25 6.45 5.09 -5.20 -0.03 6.43 16 7 C -0.52 -14.93 9.39 -34.44 -0.32 -15.26 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 11 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 C 0.52 10.70 6.03 -10.99 -0.07 10.64 16 16 O -0.54 -13.40 15.01 5.56 0.08 -13.32 16 17 C -0.12 -1.86 2.83 -89.77 -0.25 -2.11 16 18 H 0.09 1.23 5.76 -51.93 -0.30 0.93 16 19 C -0.08 -1.11 5.89 -25.07 -0.15 -1.26 16 20 C -0.14 -2.08 5.90 -89.50 -0.53 -2.61 16 21 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 22 C -0.16 -1.92 10.21 -25.42 -0.26 -2.18 16 23 C -0.16 -2.29 6.66 -88.19 -0.59 -2.87 16 24 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 25 C -0.08 -1.09 6.12 -25.06 -0.15 -1.24 16 26 H 0.06 0.95 5.52 -51.93 -0.29 0.67 16 27 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.40 6.73 -51.93 -0.35 1.05 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.99 5.16 -51.93 -0.27 0.72 16 35 H 0.04 1.26 7.36 -51.93 -0.38 0.88 16 36 H 0.03 0.84 6.65 -51.93 -0.35 0.49 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.06 5.13 -51.93 -0.27 0.79 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -32.08 334.18 -8.82 -40.89 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.22 Total: 1.24 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.08 Total: -11.92 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.39 Total: -38.97 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.08 -8.82 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250589953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.316 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds