Wall clock time and date at job start Mon Mar 30 2020 07:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47154 * 2 1 4 4 C 1.52999 * 109.47220 * 120.00380 * 2 1 3 5 5 N 1.46501 * 109.47359 * 65.83464 * 4 2 1 6 6 C 1.46501 * 119.99654 * 65.64528 * 5 4 2 7 7 C 1.50694 * 109.46974 * 90.00097 * 6 5 4 8 8 H 1.07995 * 120.00361 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00469 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99838 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47313 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47134 * 120.00271 * 11 9 7 14 14 H 1.48498 * 109.47286 * 240.00418 * 11 9 7 15 15 C 1.34776 * 120.00394 * 245.64908 * 5 4 2 16 16 O 1.21277 * 120.00030 * 175.29010 * 15 5 4 17 17 C 1.50701 * 119.99679 * 355.28703 * 15 5 4 18 18 H 1.09003 * 110.67180 * 338.67729 * 17 15 5 19 19 C 1.54888 * 110.75352 * 215.44215 * 17 15 5 20 20 C 1.54267 * 104.19353 * 279.62551 * 19 17 15 21 21 H 1.08997 * 117.41023 * 116.37525 * 20 19 17 22 22 C 1.53001 * 118.20093 * 271.00113 * 20 19 17 23 23 C 1.53876 * 106.60045 * 336.39308 * 20 19 17 24 24 H 1.09000 * 121.33367 * 138.63114 * 23 20 19 25 25 C 1.54268 * 106.59906 * 359.97438 * 23 20 19 26 26 H 1.09002 * 109.47303 * 192.46474 * 1 2 3 27 27 H 1.09000 * 109.47147 * 312.46621 * 1 2 3 28 28 H 1.09001 * 109.47212 * 72.46469 * 1 2 3 29 29 H 1.09001 * 109.46717 * 240.00282 * 2 1 3 30 30 H 1.09000 * 109.47456 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47549 * 300.00331 * 3 2 1 32 32 H 1.09003 * 109.47310 * 60.00016 * 3 2 1 33 33 H 1.08993 * 109.47034 * 185.83984 * 4 2 1 34 34 H 1.09003 * 109.47086 * 305.83584 * 4 2 1 35 35 H 1.09001 * 109.47022 * 210.00179 * 6 5 4 36 36 H 1.09000 * 109.47307 * 329.99742 * 6 5 4 37 37 H 0.96998 * 120.00171 * 179.97438 * 10 9 7 38 38 H 1.08990 * 110.49159 * 38.30764 * 19 17 15 39 39 H 1.09003 * 110.48634 * 160.95259 * 19 17 15 40 40 H 1.08997 * 117.46317 * 201.21963 * 22 20 19 41 41 H 1.09007 * 117.45881 * 346.02031 * 22 20 19 42 42 H 1.09004 * 110.48806 * 264.93613 * 25 23 20 43 43 H 1.08994 * 110.48626 * 142.28944 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6697 -2.1371 1.1810 6 6 2.2471 -2.9961 0.1441 7 6 3.5224 -3.6141 0.6566 8 1 3.8680 -3.3900 1.6549 9 6 4.2473 -4.4667 -0.1487 10 7 3.8263 -4.7402 -1.3642 11 14 5.8285 -5.2323 0.4862 12 1 6.0814 -4.7673 1.8737 13 1 5.7011 -6.7118 0.4760 14 1 6.9599 -4.8269 -0.3860 15 6 0.7979 -2.6494 2.0720 16 8 0.4258 -3.7986 1.9644 17 6 0.2856 -1.7941 3.2021 18 1 0.9607 -0.9590 3.3892 19 6 0.0895 -2.6396 4.4850 20 6 -1.2661 -3.3438 4.2704 21 1 -1.2616 -4.4319 4.2057 22 6 -2.5351 -2.6267 4.7355 23 6 -2.0529 -2.4857 3.2642 24 1 -2.6354 -2.9418 2.4638 25 6 -1.1482 -1.2895 2.9030 26 1 -0.3634 -1.0034 0.2218 27 1 -0.3633 0.6938 0.7581 28 1 -0.3634 0.3096 -0.9799 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1249 -0.6316 1.3030 34 1 1.5939 -0.2714 2.1361 35 1 1.5384 -3.7840 -0.1111 36 1 2.4629 -2.4003 -0.7427 37 1 4.3365 -5.3397 -1.9309 38 1 0.8892 -3.3735 4.5842 39 1 0.0501 -1.9959 5.3638 40 1 -3.4208 -3.2367 4.9130 41 1 -2.4140 -1.7704 5.3991 42 1 -1.3878 -0.4280 3.5264 43 1 -1.2513 -1.0383 1.8475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250589953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:46 Heat of formation + Delta-G solvation = -38.734794 kcal Electronic energy + Delta-G solvation = -21433.775477 eV Core-core repulsion = 18478.536704 eV Total energy + Delta-G solvation = -2955.238773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51678 -39.26771 -37.62044 -35.39991 -34.13643 -32.78746 -29.59154 -29.27220 -27.90363 -26.91210 -25.71050 -23.53891 -22.11356 -21.09820 -20.54199 -19.44539 -18.58161 -18.11427 -17.24311 -16.87994 -16.30991 -15.89165 -15.60674 -15.11895 -14.68930 -14.43564 -14.30317 -13.89570 -13.64426 -13.56655 -13.23479 -13.03240 -12.93752 -12.74660 -12.62796 -12.53039 -12.28310 -12.26321 -12.12916 -12.09342 -11.77890 -11.69864 -11.59270 -11.42260 -10.83356 -10.66374 -10.63153 -10.16348 -9.33736 -8.23897 -6.39166 1.33035 1.35530 1.47445 1.88309 2.30869 2.47002 2.78554 3.04860 3.55775 3.67759 3.77057 3.88896 4.02876 4.10510 4.28330 4.36224 4.39016 4.46665 4.54091 4.61975 4.71420 4.74543 4.83222 4.88386 4.91267 4.94263 4.97179 5.05104 5.08334 5.09009 5.18932 5.23096 5.32329 5.34089 5.35370 5.43324 5.47423 5.52381 5.59494 5.88925 6.06851 6.70069 6.88515 7.27693 7.58495 8.83054 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.006910 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.227400 B = 4051.303255 C = 5206.748446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.133 4.133 4 C 0.107 3.893 5 N -0.600 5.600 6 C 0.265 3.735 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.268 1.268 15 C 0.506 3.494 16 O -0.593 6.593 17 C -0.113 4.113 18 H 0.122 0.878 19 C -0.072 4.072 20 C -0.172 4.172 21 H 0.076 0.924 22 C -0.122 4.122 23 C -0.182 4.182 24 H 0.085 0.915 25 C -0.074 4.074 26 H 0.029 0.971 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.113 0.887 35 H -0.010 1.010 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.043 0.957 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 14.882 10.623 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.191 4.191 4 C -0.015 4.015 5 N -0.330 5.330 6 C 0.144 3.856 7 C -0.579 4.579 8 H 0.070 0.930 9 C -0.193 4.193 10 N -0.570 5.570 11 Si 0.792 3.208 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.296 3.704 16 O -0.474 6.474 17 C -0.134 4.134 18 H 0.140 0.860 19 C -0.110 4.110 20 C -0.190 4.190 21 H 0.094 0.906 22 C -0.158 4.158 23 C -0.200 4.200 24 H 0.103 0.897 25 C -0.111 4.111 26 H 0.048 0.952 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.008 0.992 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.779 14.194 10.381 19.654 hybrid contribution 1.033 -1.526 -0.708 1.974 sum -7.745 12.668 9.673 17.721 Atomic orbital electron populations 1.21873 0.94439 1.00876 1.02541 1.21453 0.96881 0.97522 0.97477 1.21704 1.00946 0.93261 1.03169 1.21926 1.00328 0.79384 0.99851 1.48185 1.42904 1.10871 1.31084 1.18588 0.91734 0.88805 0.86503 1.21749 1.07922 1.28032 1.00234 0.92976 1.25880 1.01775 0.96608 0.94998 1.70068 1.40769 1.36973 1.09158 0.85369 0.78803 0.77926 0.78731 1.19015 1.20798 1.19274 1.21161 0.78106 0.87620 0.83540 1.90607 1.59846 1.21190 1.75737 1.22629 0.99639 0.98294 0.92858 0.86021 1.21816 0.95028 0.97795 0.96348 1.23062 0.92408 0.97389 1.06143 0.90573 1.23571 0.95845 1.02327 0.94086 1.23590 1.03534 0.99859 0.93029 0.89653 1.21987 0.89266 0.97071 1.02772 0.95185 0.89705 0.92553 0.94121 0.92857 0.91816 0.90206 0.92188 0.86956 0.99150 0.96273 0.92461 0.93820 0.87146 0.87827 0.86252 0.86668 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.32 71.98 0.60 -2.97 16 2 C -0.11 -3.25 2.94 -10.80 -0.03 -3.28 16 3 C -0.13 -2.70 9.16 71.98 0.66 -2.04 16 4 C 0.11 3.42 5.08 86.38 0.44 3.86 16 5 N -0.60 -26.20 1.99 -826.17 -1.65 -27.85 16 6 C 0.27 14.89 5.09 85.63 0.44 15.33 16 7 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.36 5.46 84.66 0.46 0.82 16 10 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 11 Si 0.97 46.08 29.54 68.60 2.03 48.10 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 C 0.51 21.66 6.03 87.66 0.53 22.19 16 16 O -0.59 -31.81 15.01 -3.02 -0.05 -31.86 16 17 C -0.11 -3.25 2.83 -10.24 -0.03 -3.28 16 18 H 0.12 2.73 5.76 -2.39 -0.01 2.71 16 19 C -0.07 -2.00 5.89 31.67 0.19 -1.81 16 20 C -0.17 -4.97 5.90 -10.07 -0.06 -5.03 16 21 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 22 C -0.12 -2.43 10.21 31.44 0.32 -2.11 16 23 C -0.18 -4.89 6.66 -9.22 -0.06 -4.95 16 24 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 25 C -0.07 -1.72 6.12 31.68 0.19 -1.53 16 26 H 0.03 0.94 5.52 -2.39 -0.01 0.93 16 27 H 0.08 1.58 7.90 -2.39 -0.02 1.56 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.47 6.73 -2.39 -0.02 1.46 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.11 2.65 5.16 -2.39 -0.01 2.63 16 35 H -0.01 -0.63 7.36 -2.39 -0.02 -0.65 16 36 H 0.02 1.11 6.65 -2.39 -0.02 1.09 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.04 1.46 8.05 -2.39 -0.02 1.44 16 39 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.79 5.13 -2.39 -0.01 1.78 16 Total: -1.00 -76.88 334.18 5.48 -71.40 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.97 Total: 14.65 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 3.88 Total: -16.78 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.36 Total: -85.51 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.05 Total: -31.86 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.88 5.48 -71.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250589953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.665 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds