Wall clock time and date at job start Mon Mar 30 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00008 * 2 1 4 4 C 1.53004 * 109.47144 * 124.99882 * 3 2 1 5 5 C 1.53003 * 109.46898 * 60.00454 * 4 3 2 6 6 C 1.52995 * 109.47544 * 300.00413 * 4 3 2 7 7 C 1.50707 * 109.47166 * 179.97438 * 4 3 2 8 8 O 1.21281 * 119.99941 * 0.02562 * 7 4 3 9 9 N 1.34770 * 119.99901 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00080 * 180.02562 * 9 7 4 11 11 H 1.09001 * 110.53903 * 323.84285 * 10 9 7 12 12 C 1.54268 * 110.48921 * 86.45526 * 10 9 7 13 13 C 1.53869 * 106.60115 * 142.28956 * 12 10 9 14 14 C 1.54270 * 106.63967 * 359.97438 * 13 12 10 15 15 H 1.08997 * 110.48585 * 95.09409 * 14 13 12 16 16 C 1.50704 * 110.48466 * 217.73352 * 14 13 12 17 17 H 1.07997 * 119.99200 * 118.54837 * 16 14 13 18 18 C 1.37869 * 120.00106 * 298.54911 * 16 14 13 19 19 N 1.31518 * 120.00233 * 359.97438 * 18 16 14 20 20 Si 1.86809 * 119.99738 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47083 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46921 * 120.00156 * 20 18 16 23 23 H 1.48500 * 109.47076 * 239.99848 * 20 18 16 24 24 C 1.54895 * 110.48864 * 201.23194 * 10 9 7 25 25 H 1.08002 * 119.99772 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00006 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00006 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47353 * 5.00067 * 3 2 1 29 29 H 1.09000 * 109.47784 * 245.00096 * 3 2 1 30 30 H 1.09003 * 109.47270 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.46849 * 299.99669 * 5 4 3 32 32 H 1.09001 * 109.47403 * 59.99451 * 5 4 3 33 33 H 1.09009 * 109.46705 * 300.00059 * 6 4 3 34 34 H 1.09003 * 109.47378 * 59.99221 * 6 4 3 35 35 H 1.08993 * 109.47683 * 180.02562 * 6 4 3 36 36 H 0.97001 * 120.00178 * 0.02562 * 9 7 4 37 37 H 1.08999 * 110.03048 * 23.00239 * 12 10 9 38 38 H 1.08996 * 110.03060 * 261.57828 * 12 10 9 39 39 H 1.09002 * 110.03268 * 119.28653 * 13 12 10 40 40 H 1.08995 * 110.03391 * 240.66959 * 13 12 10 41 41 H 0.96997 * 119.99790 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.75082 * 321.69036 * 24 10 9 43 43 H 1.08991 * 110.75596 * 84.87726 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 4.0246 0.1729 1.0559 6 6 2.2522 1.1961 2.4890 7 6 3.7890 2.6379 1.1813 8 8 3.5704 3.4643 0.3209 9 7 4.7061 2.8865 2.1370 10 6 5.4387 4.1552 2.1371 11 1 5.6473 4.4763 1.1165 12 6 4.6415 5.2390 2.8918 13 6 5.6702 6.0845 3.6628 14 6 7.0571 5.4854 3.3509 15 1 7.5276 6.0214 2.5266 16 6 7.9351 5.5224 4.5752 17 1 8.3089 4.6022 4.9995 18 6 8.2609 6.7307 5.1536 19 7 7.8060 7.8512 4.6366 20 14 9.3498 6.7765 6.6709 21 1 9.7268 5.3915 7.0515 22 1 10.5760 7.5608 6.3766 23 1 8.6116 7.4136 7.7908 24 6 6.7547 4.0213 2.9430 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9313 30 1 4.7165 0.1925 1.8979 31 1 3.4796 -0.7711 1.0559 32 1 4.5823 0.2704 0.1244 33 1 1.5472 2.0227 2.5786 34 1 1.7071 0.2521 2.4890 35 1 2.9442 1.2165 3.3308 36 1 4.8812 2.2254 2.8249 37 1 3.9443 4.7728 3.5880 38 1 4.0994 5.8651 2.1831 39 1 5.6274 7.1211 3.3283 40 1 5.4718 6.0294 4.7331 41 1 8.0356 8.7013 5.0433 42 1 6.6058 3.3982 3.8248 43 1 7.5514 3.6190 2.3175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295536893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:33 Heat of formation + Delta-G solvation = -51.268909 kcal Electronic energy + Delta-G solvation = -20494.112248 eV Core-core repulsion = 17538.329955 eV Total energy + Delta-G solvation = -2955.782293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16713 -37.51903 -36.28559 -33.85601 -32.87282 -31.74074 -28.14730 -27.54028 -27.14029 -26.66621 -24.05910 -22.82937 -20.20023 -19.89634 -19.11253 -18.61424 -16.69836 -16.49870 -15.70897 -15.43588 -14.77078 -14.58716 -14.48528 -14.09865 -13.88575 -13.42866 -12.90146 -12.52340 -12.44715 -12.33267 -12.25658 -11.81822 -11.80710 -11.30751 -11.18164 -11.09757 -10.97750 -10.95520 -10.83911 -10.54686 -10.29410 -9.96933 -9.54458 -9.51995 -9.41111 -9.16179 -8.72712 -8.55063 -8.38874 -6.01003 -4.04422 2.09166 2.88254 3.28972 3.37318 3.40051 3.47840 4.43445 4.57743 4.59861 4.74710 4.95178 5.03022 5.15046 5.31078 5.42096 5.52342 5.56469 5.61294 5.65345 5.66892 5.71244 5.80114 5.86501 5.92005 6.07111 6.09601 6.33814 6.38196 6.45228 6.55961 6.60466 6.67047 6.74722 6.91961 6.97050 7.28767 7.33632 7.72751 7.83934 7.89617 8.01588 8.43336 8.51684 8.98361 9.59769 11.08519 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045176 B = 0.003633 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.646094 B = 7704.291978 C = 7888.705297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.071 4.071 4 C -0.078 4.078 5 C -0.142 4.142 6 C -0.139 4.139 7 C 0.518 3.482 8 O -0.545 6.545 9 N -0.716 5.716 10 C 0.135 3.865 11 H 0.083 0.917 12 C -0.133 4.133 13 C -0.094 4.094 14 C 0.051 3.949 15 H 0.030 0.970 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.119 4.119 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.259 0.741 42 H 0.060 0.940 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 -15.679 -5.598 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.164 4.164 3 C -0.109 4.109 4 C -0.081 4.081 5 C -0.199 4.199 6 C -0.197 4.197 7 C 0.303 3.697 8 O -0.423 6.423 9 N -0.366 5.366 10 C 0.032 3.968 11 H 0.101 0.899 12 C -0.172 4.172 13 C -0.133 4.133 14 C 0.032 3.968 15 H 0.049 0.951 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.158 4.158 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.230 0.770 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.149 -14.865 -6.188 19.584 hybrid contribution 0.623 -0.145 1.244 1.399 sum -10.526 -15.010 -4.943 18.988 Atomic orbital electron populations 1.23846 0.95967 1.01717 1.01958 1.22979 0.95945 0.98413 0.99108 1.20589 0.97500 0.95324 0.97438 1.20758 0.96042 0.93696 0.97654 1.21906 0.98354 0.97029 1.02630 1.21862 1.00143 1.02714 0.94944 1.20471 0.79770 0.88118 0.81315 1.90677 1.65694 1.48176 1.37714 1.46233 1.40225 1.20271 1.29826 1.22079 0.92093 0.82375 1.00282 0.89876 1.22621 0.98683 0.97320 0.98595 1.22049 0.94633 0.98128 0.98451 1.19411 0.92782 0.88177 0.96395 0.95142 1.21150 1.30245 0.92422 1.11400 0.92596 1.24988 0.95989 0.95807 0.97228 1.69989 1.44940 0.97401 1.40261 0.86590 0.80489 0.78013 0.83206 1.19830 1.21082 1.21110 1.22868 0.93512 1.01648 0.97734 0.88690 0.88616 0.87304 0.90750 0.90274 0.91976 0.91390 0.92017 0.92121 0.91378 0.92058 0.76989 0.93151 0.93100 0.92523 0.92934 0.93117 0.92091 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 14.32 29.01 0.42 -1.18 16 2 C -0.15 -1.26 7.65 -36.03 -0.28 -1.54 16 3 C -0.07 -0.77 4.02 -27.88 -0.11 -0.88 16 4 C -0.08 -0.85 0.64 -155.66 -0.10 -0.95 16 5 C -0.14 -1.26 8.11 37.16 0.30 -0.96 16 6 C -0.14 -1.33 8.13 37.15 0.30 -1.03 16 7 C 0.52 7.80 6.48 -10.98 -0.07 7.73 16 8 O -0.55 -10.40 15.70 5.56 0.09 -10.31 16 9 N -0.72 -10.63 4.90 -52.20 -0.26 -10.89 16 10 C 0.14 2.48 3.16 -66.27 -0.21 2.27 16 11 H 0.08 1.65 7.67 -51.93 -0.40 1.25 16 12 C -0.13 -2.63 6.53 -25.62 -0.17 -2.80 16 13 C -0.09 -2.20 5.40 -25.61 -0.14 -2.33 16 14 C 0.05 1.25 2.80 -90.07 -0.25 1.00 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.51 -13.79 8.40 -34.44 -0.29 -14.07 16 17 H 0.06 1.47 7.78 -52.49 -0.41 1.06 16 18 C 0.06 1.69 5.33 -17.82 -0.09 1.60 16 19 N -0.89 -25.40 12.35 55.43 0.68 -24.71 16 20 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.12 -2.34 5.89 -24.70 -0.15 -2.49 16 25 H 0.09 0.63 8.06 -52.49 -0.42 0.21 16 26 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 27 H 0.11 0.80 6.81 -52.49 -0.36 0.44 16 28 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 29 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 31 H 0.07 0.48 6.53 -51.93 -0.34 0.15 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.55 7.22 -51.93 -0.37 0.18 16 35 H 0.06 0.55 7.57 -51.93 -0.39 0.15 16 36 H 0.40 4.90 7.37 -40.82 -0.30 4.60 16 37 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.43 7.94 -51.93 -0.41 1.01 16 40 H 0.05 1.29 7.83 -51.93 -0.41 0.89 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -29.93 341.63 -7.71 -37.64 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.52 Total: 2.77 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.84 Total: -15.65 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.43 Total: -35.60 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.93 -7.71 -37.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295536893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.632 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds