Wall clock time and date at job start Mon Mar 30 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00008 * 2 1 4 4 C 1.53004 * 109.47144 * 124.99882 * 3 2 1 5 5 C 1.53003 * 109.46898 * 60.00454 * 4 3 2 6 6 C 1.52995 * 109.47544 * 300.00413 * 4 3 2 7 7 C 1.50707 * 109.47166 * 179.97438 * 4 3 2 8 8 O 1.21281 * 119.99941 * 0.02562 * 7 4 3 9 9 N 1.34770 * 119.99901 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00080 * 180.02562 * 9 7 4 11 11 H 1.09001 * 110.53903 * 323.84285 * 10 9 7 12 12 C 1.54268 * 110.48921 * 86.45526 * 10 9 7 13 13 C 1.53869 * 106.60115 * 142.28956 * 12 10 9 14 14 C 1.54270 * 106.63967 * 359.97438 * 13 12 10 15 15 H 1.08997 * 110.48585 * 95.09409 * 14 13 12 16 16 C 1.50704 * 110.48466 * 217.73352 * 14 13 12 17 17 H 1.07997 * 119.99200 * 118.54837 * 16 14 13 18 18 C 1.37869 * 120.00106 * 298.54911 * 16 14 13 19 19 N 1.31518 * 120.00233 * 359.97438 * 18 16 14 20 20 Si 1.86809 * 119.99738 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47083 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46921 * 120.00156 * 20 18 16 23 23 H 1.48500 * 109.47076 * 239.99848 * 20 18 16 24 24 C 1.54895 * 110.48864 * 201.23194 * 10 9 7 25 25 H 1.08002 * 119.99772 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00006 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00006 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47353 * 5.00067 * 3 2 1 29 29 H 1.09000 * 109.47784 * 245.00096 * 3 2 1 30 30 H 1.09003 * 109.47270 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.46849 * 299.99669 * 5 4 3 32 32 H 1.09001 * 109.47403 * 59.99451 * 5 4 3 33 33 H 1.09009 * 109.46705 * 300.00059 * 6 4 3 34 34 H 1.09003 * 109.47378 * 59.99221 * 6 4 3 35 35 H 1.08993 * 109.47683 * 180.02562 * 6 4 3 36 36 H 0.97001 * 120.00178 * 0.02562 * 9 7 4 37 37 H 1.08999 * 110.03048 * 23.00239 * 12 10 9 38 38 H 1.08996 * 110.03060 * 261.57828 * 12 10 9 39 39 H 1.09002 * 110.03268 * 119.28653 * 13 12 10 40 40 H 1.08995 * 110.03391 * 240.66959 * 13 12 10 41 41 H 0.96997 * 119.99790 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.75082 * 321.69036 * 24 10 9 43 43 H 1.08991 * 110.75596 * 84.87726 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 4.0246 0.1729 1.0559 6 6 2.2522 1.1961 2.4890 7 6 3.7890 2.6379 1.1813 8 8 3.5704 3.4643 0.3209 9 7 4.7061 2.8865 2.1370 10 6 5.4387 4.1552 2.1371 11 1 5.6473 4.4763 1.1165 12 6 4.6415 5.2390 2.8918 13 6 5.6702 6.0845 3.6628 14 6 7.0571 5.4854 3.3509 15 1 7.5276 6.0214 2.5266 16 6 7.9351 5.5224 4.5752 17 1 8.3089 4.6022 4.9995 18 6 8.2609 6.7307 5.1536 19 7 7.8060 7.8512 4.6366 20 14 9.3498 6.7765 6.6709 21 1 9.7268 5.3915 7.0515 22 1 10.5760 7.5608 6.3766 23 1 8.6116 7.4136 7.7908 24 6 6.7547 4.0213 2.9430 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9313 30 1 4.7165 0.1925 1.8979 31 1 3.4796 -0.7711 1.0559 32 1 4.5823 0.2704 0.1244 33 1 1.5472 2.0227 2.5786 34 1 1.7071 0.2521 2.4890 35 1 2.9442 1.2165 3.3308 36 1 4.8812 2.2254 2.8249 37 1 3.9443 4.7728 3.5880 38 1 4.0994 5.8651 2.1831 39 1 5.6274 7.1211 3.3283 40 1 5.4718 6.0294 4.7331 41 1 8.0356 8.7013 5.0433 42 1 6.6058 3.3982 3.8248 43 1 7.5514 3.6190 2.3175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295536893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:33 Heat of formation + Delta-G solvation = -68.216686 kcal Electronic energy + Delta-G solvation = -20494.847159 eV Core-core repulsion = 17538.329955 eV Total energy + Delta-G solvation = -2956.517204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36302 -39.01898 -37.41169 -35.39116 -34.13750 -33.18593 -29.97925 -28.76854 -28.23743 -27.51391 -25.91116 -24.02152 -21.55141 -21.24152 -20.65110 -19.69344 -18.45224 -17.67918 -17.16034 -16.58746 -16.42554 -16.01659 -15.69997 -15.44385 -14.82268 -14.40805 -14.28161 -14.11365 -13.68339 -13.59788 -13.29785 -13.09238 -12.93533 -12.80318 -12.58340 -12.53283 -12.37166 -12.12259 -12.02677 -11.82153 -11.79534 -11.68573 -11.42950 -11.11984 -10.75647 -10.58348 -10.48673 -10.15115 -9.96571 -8.10485 -6.20892 1.42098 1.44058 1.44584 1.55191 1.68354 2.26120 2.45555 3.20863 3.61294 3.77520 3.91796 3.92500 4.02526 4.18900 4.24763 4.32049 4.37523 4.67201 4.75695 4.77306 4.81489 4.84034 4.86205 4.93528 4.99341 5.01225 5.04102 5.12244 5.13318 5.16926 5.30981 5.34598 5.37582 5.41756 5.64727 5.66831 5.79483 5.91739 5.96392 5.97145 6.37437 6.64351 6.90998 7.31795 7.47211 8.98825 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045176 B = 0.003633 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.646094 B = 7704.291978 C = 7888.705297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.070 4.070 4 C -0.069 4.069 5 C -0.140 4.140 6 C -0.137 4.137 7 C 0.514 3.486 8 O -0.590 6.590 9 N -0.705 5.705 10 C 0.149 3.851 11 H 0.065 0.935 12 C -0.122 4.122 13 C -0.083 4.083 14 C 0.039 3.961 15 H -0.004 1.004 16 C -0.526 4.526 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.261 1.261 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.103 4.103 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.412 0.588 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.025 0.975 40 H 0.036 0.964 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 -18.823 -4.558 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.168 4.168 3 C -0.108 4.108 4 C -0.072 4.072 5 C -0.197 4.197 6 C -0.194 4.194 7 C 0.302 3.698 8 O -0.470 6.470 9 N -0.356 5.356 10 C 0.044 3.956 11 H 0.084 0.916 12 C -0.161 4.161 13 C -0.121 4.121 14 C 0.020 3.980 15 H 0.014 0.986 16 C -0.564 4.564 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.562 5.562 20 Si 0.781 3.219 21 H -0.185 1.185 22 H -0.211 1.211 23 H -0.209 1.209 24 C -0.141 4.141 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.148 0.852 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.550 -18.053 -5.131 22.037 hybrid contribution 0.716 0.878 0.866 1.426 sum -10.834 -17.175 -4.265 20.749 Atomic orbital electron populations 1.24009 0.95934 1.02352 1.00762 1.22932 0.96024 0.97733 1.00102 1.20536 0.97176 0.96229 0.96819 1.20761 0.96137 0.91799 0.98545 1.21943 0.98138 0.96964 1.02693 1.21881 1.00059 1.03313 0.94176 1.21324 0.79213 0.89166 0.80139 1.90662 1.66942 1.50028 1.39390 1.46020 1.39834 1.19247 1.30471 1.21640 0.91653 0.83571 0.98752 0.91640 1.22482 0.97950 0.97268 0.98424 1.21821 0.95557 0.97089 0.97672 1.19407 0.92641 0.91201 0.94721 0.98562 1.21536 1.30306 0.92632 1.11954 0.92029 1.25819 0.97439 0.95550 1.00257 1.70132 1.46339 0.97913 1.41797 0.85545 0.78446 0.78440 0.79454 1.18516 1.21057 1.20931 1.22659 0.94355 0.98519 0.98594 0.86710 0.89388 0.85240 0.92817 0.91848 0.90937 0.88828 0.92817 0.93499 0.89218 0.91006 0.75045 0.91433 0.93785 0.95577 0.94544 0.93241 0.90487 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 67.78 0.97 -1.69 16 2 C -0.15 -2.20 7.65 25.64 0.20 -2.00 16 3 C -0.07 -1.45 4.02 29.85 0.12 -1.33 16 4 C -0.07 -1.38 0.64 -52.92 -0.03 -1.41 16 5 C -0.14 -2.04 8.11 71.98 0.58 -1.46 16 6 C -0.14 -2.23 8.13 71.98 0.58 -1.64 16 7 C 0.51 15.01 6.48 87.66 0.57 15.58 16 8 O -0.59 -22.80 15.70 -3.03 -0.05 -22.85 16 9 N -0.71 -19.75 4.90 -437.44 -2.14 -21.90 16 10 C 0.15 5.38 3.16 46.07 0.15 5.52 16 11 H 0.07 2.63 7.67 -2.39 -0.02 2.62 16 12 C -0.12 -4.85 6.53 31.32 0.20 -4.64 16 13 C -0.08 -3.98 5.40 31.32 0.17 -3.81 16 14 C 0.04 1.95 2.80 -10.44 -0.03 1.92 16 15 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 16 C -0.53 -28.29 8.40 25.60 0.22 -28.07 16 17 H 0.06 3.17 7.78 -2.91 -0.02 3.15 16 18 C 0.01 0.43 5.33 84.65 0.45 0.88 16 19 N -0.92 -54.19 12.35 21.44 0.26 -53.93 16 20 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 C -0.10 -3.95 5.89 31.91 0.19 -3.76 16 25 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 26 H 0.09 1.33 7.84 -2.91 -0.02 1.31 16 27 H 0.13 1.39 6.81 -2.91 -0.02 1.37 16 28 H 0.05 1.31 7.75 -2.39 -0.02 1.30 16 29 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 30 H 0.07 0.92 7.56 -2.39 -0.02 0.90 16 31 H 0.09 0.92 6.53 -2.39 -0.02 0.90 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 1.11 7.22 -2.39 -0.02 1.09 16 35 H 0.07 1.03 7.57 -2.39 -0.02 1.01 16 36 H 0.41 8.95 7.37 -92.71 -0.68 8.27 16 37 H 0.07 2.43 8.04 -2.39 -0.02 2.42 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.03 1.37 7.94 -2.39 -0.02 1.35 16 40 H 0.04 1.83 7.83 -2.39 -0.02 1.81 16 41 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.08 2.71 7.93 -2.39 -0.02 2.69 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -66.54 341.63 4.71 -61.83 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.28 Total: 17.58 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 4.33 Total: -25.92 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -1.88 Total: -75.82 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -66.54 4.71 -61.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295536893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.392 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds