Wall clock time and date at job start Mon Mar 30 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46554 * 2 1 4 4 C 1.53002 * 117.49516 * 8.59409 * 3 2 1 5 5 C 1.52997 * 60.00302 * 252.51227 * 4 3 2 6 6 C 1.53043 * 109.45872 * 119.97308 * 2 1 3 7 7 C 1.53194 * 109.31141 * 58.63963 * 6 2 1 8 8 N 1.46927 * 108.77580 * 54.63642 * 7 6 2 9 9 C 1.34777 * 120.62962 * 126.36970 * 8 7 6 10 10 O 1.21279 * 119.99739 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99732 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.46969 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 C 1.46922 * 118.73631 * 306.63920 * 8 7 6 22 22 C 1.52770 * 109.00910 * 53.31439 * 21 8 7 23 23 H 1.09000 * 109.47145 * 300.03104 * 1 2 3 24 24 H 1.09004 * 109.46935 * 60.02060 * 1 2 3 25 25 H 1.08994 * 109.47595 * 180.02562 * 1 2 3 26 26 H 1.08998 * 115.55250 * 154.30110 * 3 2 1 27 27 H 1.08997 * 117.50345 * 359.97438 * 4 3 2 28 28 H 1.09004 * 117.50025 * 145.02575 * 4 3 2 29 29 H 1.09003 * 117.50025 * 252.51421 * 5 4 3 30 30 H 1.08999 * 117.52142 * 107.47673 * 5 4 3 31 31 H 1.08998 * 109.49444 * 298.68608 * 6 2 1 32 32 H 1.08997 * 109.49449 * 178.59027 * 6 2 1 33 33 H 1.08993 * 109.58679 * 294.84639 * 7 6 2 34 34 H 1.08999 * 109.70154 * 174.49301 * 7 6 2 35 35 H 1.09000 * 109.47664 * 59.99795 * 11 9 8 36 36 H 1.09002 * 109.46824 * 299.99265 * 11 9 8 37 37 H 1.09001 * 109.47671 * 59.99812 * 12 11 9 38 38 H 1.08998 * 109.47454 * 299.99809 * 12 11 9 39 39 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.58453 * 173.14407 * 21 8 7 41 41 H 1.08998 * 109.59150 * 293.57497 * 21 8 7 42 42 H 1.08994 * 109.56090 * 185.55194 * 22 21 8 43 43 H 1.09001 * 109.35925 * 65.49300 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 1.0099 2.5557 0.2028 5 6 1.6358 2.3346 -1.1757 6 6 2.0398 -0.7209 1.2500 7 6 1.4991 -2.1542 1.2642 8 7 1.8619 -2.8090 -0.0001 9 6 2.5154 -3.9877 -0.0002 10 8 2.8101 -4.5176 1.0501 11 6 2.8810 -4.6464 -1.3054 12 6 3.6110 -5.9616 -1.0259 13 6 3.9760 -6.6208 -2.3311 14 1 3.7132 -6.1489 -3.2663 15 6 4.6500 -7.8235 -2.3312 16 7 4.9748 -8.3954 -1.1923 17 14 5.1031 -8.6402 -3.9490 18 1 6.4445 -8.1721 -4.3812 19 1 5.1271 -10.1140 -3.7698 20 1 4.0978 -8.2834 -4.9821 21 6 1.5038 -2.1514 -1.2643 22 6 2.0395 -0.7208 -1.2502 23 1 -0.3633 0.5143 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 3.0319 1.5905 0.4264 27 1 -0.0308 2.2605 0.3358 28 1 1.3244 3.4364 0.7629 29 1 2.3622 3.0697 -1.5224 30 1 1.0073 1.8935 -1.9493 31 1 1.6959 -0.1935 2.1398 32 1 3.1295 -0.7432 1.2381 33 1 0.4143 -2.1345 1.3674 34 1 1.9356 -2.7034 2.0984 35 1 3.5317 -3.9844 -1.8768 36 1 1.9750 -4.8477 -1.8770 37 1 2.9607 -6.6238 -0.4543 38 1 4.5170 -5.7601 -0.4544 39 1 5.4493 -9.2414 -1.1924 40 1 1.9455 -2.6973 -2.0980 41 1 0.4193 -2.1314 -1.3715 42 1 1.6954 -0.1935 -2.1398 43 1 3.1293 -0.7431 -1.2385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360600640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:16 Heat of formation + Delta-G solvation = -30.141708 kcal Electronic energy + Delta-G solvation = -20639.369163 eV Core-core repulsion = 17684.503014 eV Total energy + Delta-G solvation = -2954.866149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49395 -38.68177 -36.19818 -33.50241 -32.78634 -31.47358 -30.53496 -27.89197 -26.20648 -24.97060 -23.55144 -22.27550 -21.95711 -20.83909 -19.10254 -17.79476 -17.09492 -16.34045 -15.63421 -15.37744 -15.21343 -14.94948 -14.53206 -14.37729 -13.88082 -13.48492 -12.99198 -12.84556 -12.48022 -12.24766 -12.15822 -12.05385 -11.82399 -11.34665 -11.21421 -11.16900 -11.00365 -10.93531 -10.91555 -10.68503 -10.56694 -10.23510 -9.95259 -9.92760 -9.55867 -9.13641 -8.93545 -8.34282 -8.26702 -5.93833 -3.98183 3.26795 3.34582 3.35818 3.41007 3.43759 3.56784 4.33585 4.48576 4.54662 4.60494 4.79182 4.86933 4.99342 5.04463 5.15685 5.27376 5.32370 5.40412 5.40997 5.41614 5.50898 5.60017 5.64065 5.70372 5.76225 5.81202 5.88716 5.93163 5.95939 6.03087 6.08289 6.15282 6.25112 6.26075 6.34938 6.81275 6.95970 7.76880 7.82695 7.89524 8.10009 8.41258 8.80654 9.10455 9.65181 11.17156 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.003767 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.443946 B = 7431.969036 C = 7888.186030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.140 4.140 4 C -0.185 4.185 5 C -0.180 4.180 6 C -0.119 4.119 7 C 0.109 3.891 8 N -0.623 5.623 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.128 4.128 12 C 0.037 3.963 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.107 3.893 22 C -0.122 4.122 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 22.096 0.898 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 C -0.158 4.158 4 C -0.222 4.222 5 C -0.216 4.216 6 C -0.157 4.157 7 C -0.014 4.014 8 N -0.359 5.359 9 C 0.303 3.697 10 O -0.411 6.411 11 C -0.168 4.168 12 C -0.001 4.001 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.016 4.016 22 C -0.160 4.160 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.506 21.616 1.548 23.665 hybrid contribution 0.315 -0.292 -0.907 1.003 sum -9.191 21.325 0.641 23.230 Atomic orbital electron populations 1.22105 0.94717 1.02224 1.01593 1.20017 0.95221 0.92115 0.95489 1.22348 0.99208 0.91199 1.03042 1.23124 0.99095 1.00126 0.99878 1.22923 1.03895 1.03023 0.91805 1.21932 1.01243 0.95298 0.97277 1.21504 0.99303 0.92499 0.88047 1.48269 1.59350 1.22023 1.06277 1.21564 0.75684 0.79436 0.93037 1.90650 1.53132 1.63112 1.34250 1.21869 1.01706 1.00587 0.92634 1.18904 0.95577 0.88834 0.96750 1.21223 1.37044 1.05650 0.92526 0.92641 1.25026 0.95932 0.97270 0.96176 1.70003 1.39942 1.17821 1.25087 0.86594 0.78796 0.78630 0.83951 1.20689 1.21239 1.19882 1.21645 0.99925 0.93087 0.86957 1.21891 1.01582 0.95151 0.97421 0.92333 0.92629 0.91874 0.88033 0.88198 0.89336 0.89150 0.88763 0.91033 0.91462 0.92040 0.89205 0.90353 0.90365 0.95870 0.95866 0.92975 0.89077 0.91708 0.90811 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 6.31 37.16 0.23 -0.97 16 2 C -0.03 -0.26 0.62 -154.47 -0.10 -0.35 16 3 C -0.14 -1.16 5.15 -90.62 -0.47 -1.62 16 4 C -0.19 -1.34 9.57 -26.73 -0.26 -1.60 16 5 C -0.18 -1.33 9.36 -26.73 -0.25 -1.58 16 6 C -0.12 -1.26 4.89 -26.61 -0.13 -1.39 16 7 C 0.11 1.43 5.97 -3.71 -0.02 1.41 16 8 N -0.62 -9.40 2.98 -173.03 -0.52 -9.92 16 9 C 0.51 10.30 7.70 -10.99 -0.08 10.22 16 10 O -0.54 -13.03 15.39 5.56 0.09 -12.95 16 11 C -0.13 -2.68 3.99 -27.89 -0.11 -2.79 16 12 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 13 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.11 1.25 5.85 -3.93 -0.02 1.22 16 22 C -0.12 -1.21 4.75 -26.83 -0.13 -1.33 16 23 H 0.06 0.44 6.97 -51.93 -0.36 0.08 16 24 H 0.05 0.41 7.07 -51.93 -0.37 0.04 16 25 H 0.06 0.56 4.99 -51.93 -0.26 0.30 16 26 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 27 H 0.10 0.69 5.85 -51.93 -0.30 0.39 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.67 7.06 -51.93 -0.37 0.31 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.71 6.69 -51.93 -0.35 0.37 16 34 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 35 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 36 H 0.08 1.50 7.95 -51.93 -0.41 1.08 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.09 1.08 5.93 -51.93 -0.31 0.78 16 41 H 0.06 0.66 6.70 -51.93 -0.35 0.32 16 42 H 0.07 0.62 7.24 -51.93 -0.38 0.24 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -33.30 327.71 -8.77 -42.07 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.13 Total: -2.26 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.86 Total: -11.70 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.22 Total: -36.89 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.30 -8.77 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360600640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.928 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds