Wall clock time and date at job start Mon Mar 30 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46554 * 2 1 4 4 C 1.53002 * 117.49516 * 8.59409 * 3 2 1 5 5 C 1.52997 * 60.00302 * 252.51227 * 4 3 2 6 6 C 1.53043 * 109.45872 * 119.97308 * 2 1 3 7 7 C 1.53194 * 109.31141 * 58.63963 * 6 2 1 8 8 N 1.46927 * 108.77580 * 54.63642 * 7 6 2 9 9 C 1.34777 * 120.62962 * 126.36970 * 8 7 6 10 10 O 1.21279 * 119.99739 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99732 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.46969 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 C 1.46922 * 118.73631 * 306.63920 * 8 7 6 22 22 C 1.52770 * 109.00910 * 53.31439 * 21 8 7 23 23 H 1.09000 * 109.47145 * 300.03104 * 1 2 3 24 24 H 1.09004 * 109.46935 * 60.02060 * 1 2 3 25 25 H 1.08994 * 109.47595 * 180.02562 * 1 2 3 26 26 H 1.08998 * 115.55250 * 154.30110 * 3 2 1 27 27 H 1.08997 * 117.50345 * 359.97438 * 4 3 2 28 28 H 1.09004 * 117.50025 * 145.02575 * 4 3 2 29 29 H 1.09003 * 117.50025 * 252.51421 * 5 4 3 30 30 H 1.08999 * 117.52142 * 107.47673 * 5 4 3 31 31 H 1.08998 * 109.49444 * 298.68608 * 6 2 1 32 32 H 1.08997 * 109.49449 * 178.59027 * 6 2 1 33 33 H 1.08993 * 109.58679 * 294.84639 * 7 6 2 34 34 H 1.08999 * 109.70154 * 174.49301 * 7 6 2 35 35 H 1.09000 * 109.47664 * 59.99795 * 11 9 8 36 36 H 1.09002 * 109.46824 * 299.99265 * 11 9 8 37 37 H 1.09001 * 109.47671 * 59.99812 * 12 11 9 38 38 H 1.08998 * 109.47454 * 299.99809 * 12 11 9 39 39 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.58453 * 173.14407 * 21 8 7 41 41 H 1.08998 * 109.59150 * 293.57497 * 21 8 7 42 42 H 1.08994 * 109.56090 * 185.55194 * 22 21 8 43 43 H 1.09001 * 109.35925 * 65.49300 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 1.0099 2.5557 0.2028 5 6 1.6358 2.3346 -1.1757 6 6 2.0398 -0.7209 1.2500 7 6 1.4991 -2.1542 1.2642 8 7 1.8619 -2.8090 -0.0001 9 6 2.5154 -3.9877 -0.0002 10 8 2.8101 -4.5176 1.0501 11 6 2.8810 -4.6464 -1.3054 12 6 3.6110 -5.9616 -1.0259 13 6 3.9760 -6.6208 -2.3311 14 1 3.7132 -6.1489 -3.2663 15 6 4.6500 -7.8235 -2.3312 16 7 4.9748 -8.3954 -1.1923 17 14 5.1031 -8.6402 -3.9490 18 1 6.4445 -8.1721 -4.3812 19 1 5.1271 -10.1140 -3.7698 20 1 4.0978 -8.2834 -4.9821 21 6 1.5038 -2.1514 -1.2643 22 6 2.0395 -0.7208 -1.2502 23 1 -0.3633 0.5143 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 3.0319 1.5905 0.4264 27 1 -0.0308 2.2605 0.3358 28 1 1.3244 3.4364 0.7629 29 1 2.3622 3.0697 -1.5224 30 1 1.0073 1.8935 -1.9493 31 1 1.6959 -0.1935 2.1398 32 1 3.1295 -0.7432 1.2381 33 1 0.4143 -2.1345 1.3674 34 1 1.9356 -2.7034 2.0984 35 1 3.5317 -3.9844 -1.8768 36 1 1.9750 -4.8477 -1.8770 37 1 2.9607 -6.6238 -0.4543 38 1 4.5170 -5.7601 -0.4544 39 1 5.4493 -9.2414 -1.1924 40 1 1.9455 -2.6973 -2.0980 41 1 0.4193 -2.1314 -1.3715 42 1 1.6954 -0.1935 -2.1398 43 1 3.1293 -0.7431 -1.2385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360600640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:15 Heat of formation + Delta-G solvation = -49.854207 kcal Electronic energy + Delta-G solvation = -20640.223961 eV Core-core repulsion = 17684.503014 eV Total energy + Delta-G solvation = -2955.720947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55761 -39.90286 -37.24557 -35.61030 -33.94685 -32.97717 -31.95471 -28.78197 -27.83823 -26.24217 -24.56231 -23.60832 -22.81995 -22.04917 -20.31093 -19.08407 -18.52936 -17.75832 -16.86284 -16.73971 -16.59842 -16.36639 -15.69782 -15.38869 -15.09577 -14.65132 -14.30888 -14.19133 -13.95023 -13.52218 -13.40411 -13.15308 -12.93647 -12.81568 -12.58488 -12.45236 -12.11890 -11.99965 -11.93542 -11.81354 -11.70825 -11.57683 -11.44557 -11.30287 -10.93406 -10.72631 -10.57102 -10.51353 -9.55506 -8.17925 -6.32426 1.42123 1.45297 1.56252 1.68802 2.08233 2.43562 2.97723 3.14895 3.63076 3.67066 3.86403 3.94285 4.13343 4.18689 4.24667 4.30797 4.33857 4.43457 4.46593 4.51189 4.56765 4.67378 4.73846 4.85039 4.89032 4.90464 5.00081 5.04544 5.06157 5.12821 5.20911 5.23451 5.35005 5.37028 5.40717 5.48146 5.60470 5.61413 5.69214 5.84620 6.17072 6.43147 6.85897 7.27641 7.38011 8.94947 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.003767 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.443946 B = 7431.969036 C = 7888.186030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 C -0.151 4.151 4 C -0.179 4.179 5 C -0.175 4.175 6 C -0.112 4.112 7 C 0.106 3.894 8 N -0.610 5.610 9 C 0.508 3.492 10 O -0.593 6.593 11 C -0.115 4.115 12 C 0.043 3.957 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.976 3.024 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.254 1.254 21 C 0.098 3.902 22 C -0.118 4.118 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.102 0.898 37 H -0.019 1.019 38 H -0.021 1.021 39 H 0.263 0.737 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 24.293 -1.637 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 C -0.169 4.169 4 C -0.216 4.216 5 C -0.212 4.212 6 C -0.150 4.150 7 C -0.016 4.016 8 N -0.343 5.343 9 C 0.298 3.702 10 O -0.474 6.474 11 C -0.154 4.154 12 C 0.006 3.994 13 C -0.580 4.580 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.177 1.177 21 C -0.023 4.023 22 C -0.156 4.156 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.120 0.880 37 H -0.001 1.001 38 H -0.002 1.002 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.057 23.889 -1.019 26.343 hybrid contribution 0.756 -0.899 -0.061 1.176 sum -10.301 22.989 -1.080 25.215 Atomic orbital electron populations 1.22084 0.93388 1.02126 1.02746 1.19954 0.96138 0.92313 0.93907 1.22234 0.99281 0.90903 1.04498 1.23191 0.99088 0.99563 0.99723 1.22993 1.03862 1.02516 0.91859 1.21880 1.00064 0.93788 0.99309 1.21673 1.00512 0.93369 0.86078 1.48245 1.57086 1.20348 1.08632 1.21395 0.76157 0.80807 0.91820 1.90628 1.55916 1.65137 1.35712 1.21620 1.02338 0.97732 0.93746 1.18686 0.93596 0.91562 0.95579 1.21704 1.36857 1.06059 0.93407 0.90522 1.26167 0.95678 0.98152 1.00534 1.70188 1.40973 1.18438 1.28265 0.85294 0.79070 0.77008 0.78710 1.19686 1.21188 1.17739 1.21993 1.01589 0.93827 0.84925 1.21879 1.00642 0.94106 0.98967 0.91513 0.91250 0.92521 0.88934 0.87441 0.88907 0.88842 0.88022 0.89310 0.93300 0.89756 0.92176 0.88179 0.87951 1.00074 1.00208 0.92854 0.89045 0.89206 0.88378 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 6.31 71.98 0.45 -1.39 16 2 C -0.02 -0.36 0.62 -52.16 -0.03 -0.39 16 3 C -0.15 -2.13 5.15 -10.79 -0.06 -2.18 16 4 C -0.18 -2.03 9.57 30.59 0.29 -1.74 16 5 C -0.18 -2.04 9.36 30.60 0.29 -1.75 16 6 C -0.11 -2.26 4.89 30.67 0.15 -2.11 16 7 C 0.11 2.74 5.97 86.36 0.52 3.25 16 8 N -0.61 -18.10 2.98 -819.74 -2.44 -20.54 16 9 C 0.51 21.04 7.70 87.66 0.67 21.71 16 10 O -0.59 -30.78 15.39 -3.03 -0.05 -30.83 16 11 C -0.11 -4.83 3.99 29.85 0.12 -4.71 16 12 C 0.04 2.49 4.26 29.85 0.13 2.62 16 13 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 14 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 15 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 16 N -0.94 -60.50 13.29 21.45 0.28 -60.21 16 17 Si 0.98 44.68 29.54 68.60 2.03 46.70 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 21 C 0.10 2.05 5.85 86.22 0.50 2.55 16 22 C -0.12 -2.02 4.75 30.53 0.14 -1.87 16 23 H 0.07 0.76 6.97 -2.39 -0.02 0.74 16 24 H 0.07 0.71 7.07 -2.39 -0.02 0.70 16 25 H 0.06 0.80 4.99 -2.39 -0.01 0.78 16 26 H 0.09 1.48 8.11 -2.39 -0.02 1.46 16 27 H 0.11 1.08 5.85 -2.39 -0.01 1.06 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.05 7.06 -2.39 -0.02 1.03 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.82 6.69 -2.39 -0.02 1.81 16 34 H 0.06 1.94 7.00 -2.39 -0.02 1.92 16 35 H 0.10 3.75 7.68 -2.39 -0.02 3.73 16 36 H 0.10 3.79 7.95 -2.39 -0.02 3.77 16 37 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 38 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 39 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.09 1.93 5.93 -2.39 -0.01 1.92 16 41 H 0.09 1.51 6.70 -2.39 -0.02 1.49 16 42 H 0.10 1.26 7.24 -2.39 -0.02 1.24 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -76.51 327.71 4.68 -71.83 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.98 Total: 10.23 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 3.88 Total: -17.18 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.16 Total: -80.76 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.83 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.51 4.68 -71.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360600640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.973 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds