Wall clock time and date at job start Mon Mar 30 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47451 * 2 1 4 4 C 1.52997 * 109.47239 * 183.54267 * 3 2 1 5 5 C 1.50698 * 115.55186 * 292.01903 * 4 3 2 6 6 O 1.21294 * 119.99867 * 112.71855 * 5 4 3 7 7 N 1.34777 * 120.00108 * 292.72002 * 5 4 3 8 8 C 1.37099 * 119.99560 * 184.52669 * 7 5 4 9 9 H 1.07999 * 120.00339 * 37.46309 * 8 7 5 10 10 C 1.38951 * 119.99834 * 217.45571 * 8 7 5 11 11 N 1.31407 * 120.00076 * 335.89514 * 10 8 7 12 12 Si 1.86799 * 120.00059 * 155.89394 * 10 8 7 13 13 H 1.48507 * 109.47073 * 89.99959 * 12 10 8 14 14 H 1.48494 * 109.47408 * 210.00434 * 12 10 8 15 15 H 1.48501 * 109.47188 * 330.00371 * 12 10 8 16 16 C 1.46493 * 120.00186 * 4.53415 * 7 5 4 17 17 C 1.54888 * 110.76218 * 97.56090 * 16 7 5 18 18 C 1.54261 * 104.31395 * 156.32159 * 17 16 7 19 19 C 1.53879 * 106.60129 * 336.32914 * 18 17 16 20 20 C 1.54266 * 106.59468 * 359.97438 * 19 18 17 21 21 C 1.52997 * 117.49813 * 77.69436 * 4 3 2 22 22 C 1.53006 * 117.49698 * 146.35581 * 4 3 2 23 23 H 1.08998 * 109.46857 * 64.94850 * 1 2 3 24 24 H 1.09000 * 109.47221 * 184.94943 * 1 2 3 25 25 H 1.09005 * 109.46807 * 304.94742 * 1 2 3 26 26 H 1.09000 * 109.47106 * 239.99830 * 2 1 3 27 27 H 1.08999 * 109.47351 * 120.00255 * 2 1 3 28 28 H 1.09001 * 109.46408 * 63.54207 * 3 2 1 29 29 H 1.08995 * 109.47087 * 303.54458 * 3 2 1 30 30 H 0.97002 * 120.00011 * 179.97438 * 11 10 8 31 31 H 1.09005 * 110.81320 * 334.22556 * 16 7 5 32 32 H 1.09003 * 110.48222 * 37.58146 * 17 16 7 33 33 H 1.09001 * 110.48659 * 275.07363 * 17 16 7 34 34 H 1.09001 * 110.03202 * 95.61068 * 18 17 16 35 35 H 1.09000 * 110.03662 * 217.03966 * 18 17 16 36 36 H 1.08991 * 110.03328 * 119.28516 * 19 18 17 37 37 H 1.09003 * 110.03065 * 240.66707 * 19 18 17 38 38 H 1.09000 * 110.48082 * 142.29025 * 20 19 18 39 39 H 1.09001 * 110.48923 * 264.79791 * 20 19 18 40 40 H 1.09004 * 117.49962 * 214.99796 * 21 4 3 41 41 H 1.08999 * 117.50067 * 0.02562 * 21 4 3 42 42 H 1.09002 * 117.49899 * 359.97184 * 22 4 3 43 43 H 1.08997 * 117.49741 * 144.97670 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5674 1.4433 -0.0891 5 6 4.2894 0.9081 1.1205 6 8 4.9142 -0.1287 1.0443 7 7 4.2409 1.5815 2.2870 8 6 4.9723 1.1451 3.3613 9 1 5.9581 0.7303 3.2109 10 6 4.4454 1.2365 4.6438 11 7 3.5143 2.1248 4.9097 12 14 5.0606 0.0967 5.9898 13 1 6.2108 0.7279 6.6855 14 1 3.9686 -0.1527 6.9647 15 1 5.4917 -1.1912 5.3892 16 6 3.4065 2.7796 2.4070 17 6 2.0429 2.4363 3.0563 18 6 1.5620 3.7711 3.6619 19 6 2.8194 4.6274 3.8930 20 6 4.0207 3.7827 3.4205 21 6 4.1952 1.1819 -1.4597 22 6 4.2296 2.5889 -0.8575 23 1 -0.3633 0.4351 -0.9310 24 1 -0.3633 -1.0238 0.0887 25 1 -0.3633 0.5887 0.8424 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.7295 1.9376 0.9201 29 1 1.6258 1.9743 -0.8565 30 1 3.1462 2.1884 5.8050 31 1 3.2635 3.2510 1.4346 32 1 2.1704 1.6869 3.8376 33 1 1.3392 2.0838 2.3022 34 1 0.8895 4.2751 2.9678 35 1 1.0542 3.5900 4.6092 36 1 2.7571 5.5469 3.3112 37 1 2.9215 4.8624 4.9525 38 1 4.7615 4.4141 2.9300 39 1 4.4688 3.2529 4.2611 40 1 5.1305 0.6227 -1.4864 41 1 3.5201 1.0097 -2.2979 42 1 3.5770 3.3416 -1.2999 43 1 5.1872 2.9554 -0.4879 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384043369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:56 Heat of formation + Delta-G solvation = 27.063210 kcal Electronic energy + Delta-G solvation = -22406.662493 eV Core-core repulsion = 19454.276936 eV Total energy + Delta-G solvation = -2952.385558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59885 -37.39083 -35.91162 -33.37701 -33.32508 -31.85947 -27.78287 -26.97598 -26.49557 -25.19047 -22.29882 -21.95845 -20.84889 -19.82213 -19.25688 -18.16621 -16.39857 -15.99125 -15.30359 -14.71090 -14.65680 -14.11059 -14.04604 -13.67655 -13.17552 -12.86866 -12.75999 -12.49804 -12.19115 -11.95465 -11.62600 -11.14164 -11.12163 -11.05809 -10.88375 -10.72914 -10.54370 -10.39090 -10.31926 -10.07918 -10.00880 -9.85608 -9.72805 -9.55309 -9.28321 -9.04785 -8.24340 -7.95655 -7.22734 -6.04414 -3.92457 3.17184 3.28880 3.38310 3.84786 4.11393 4.28241 4.83246 4.94349 5.09160 5.30737 5.41007 5.54601 5.57026 5.69072 5.79140 5.85240 5.94325 6.00655 6.07599 6.13385 6.20369 6.25262 6.30831 6.35398 6.40542 6.55246 6.59593 6.62810 6.64281 6.77305 6.79536 6.84345 6.91298 7.06572 7.14011 7.25166 7.47934 7.57574 8.02004 8.23393 8.36336 8.63497 9.20680 9.45387 10.06077 10.53365 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.008949 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.450210 B = 3128.096024 C = 3534.725180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.097 4.097 4 C -0.132 4.132 5 C 0.497 3.503 6 O -0.581 6.581 7 N -0.441 5.441 8 C -0.291 4.291 9 H 0.090 0.910 10 C 0.016 3.984 11 N -0.823 5.823 12 Si 0.911 3.089 13 H -0.281 1.281 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.152 3.848 17 C -0.128 4.128 18 C -0.095 4.095 19 C -0.094 4.094 20 C -0.128 4.128 21 C -0.155 4.155 22 C -0.169 4.169 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.261 0.739 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.026 0.974 37 H 0.046 0.954 38 H 0.004 0.996 39 H 0.163 0.837 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 3.583 -5.147 8.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.134 4.134 4 C -0.135 4.135 5 C 0.284 3.716 6 O -0.464 6.464 7 N -0.160 5.160 8 C -0.419 4.419 9 H 0.107 0.893 10 C -0.184 4.184 11 N -0.465 5.465 12 Si 0.738 3.262 13 H -0.207 1.207 14 H -0.209 1.209 15 H -0.196 1.196 16 C 0.048 3.952 17 C -0.165 4.165 18 C -0.133 4.133 19 C -0.132 4.132 20 C -0.165 4.165 21 C -0.192 4.192 22 C -0.206 4.206 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.179 0.821 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.180 3.128 -4.973 7.833 hybrid contribution 0.074 -0.201 0.566 0.605 sum -5.107 2.927 -4.407 7.353 Atomic orbital electron populations 1.21762 0.96409 1.01173 1.01250 1.21406 0.94774 0.96951 1.02474 1.21606 0.90829 0.97467 1.03530 1.21445 0.95450 1.03498 0.93107 1.19126 0.83883 0.84702 0.83881 1.90514 1.46823 1.24393 1.84712 1.43664 1.40313 1.22410 1.09574 1.19313 0.99784 1.38360 0.84423 0.89259 1.25326 0.97333 0.96840 0.98889 1.70812 1.27701 1.27161 1.20784 0.86168 0.78129 0.81887 0.80031 1.20749 1.20942 1.19551 1.21890 0.91431 0.86067 0.95834 1.23512 0.93772 0.99480 0.99774 1.21735 0.96347 0.96599 0.98659 1.21726 0.96326 0.96017 0.99155 1.23690 0.95647 0.94926 1.02231 1.22876 1.02821 0.98459 0.95067 1.23003 1.02369 0.91529 1.03723 0.93321 0.93149 0.92734 0.92409 0.91591 0.88630 0.92483 0.92700 0.93033 0.85826 0.95944 0.95187 0.93492 0.95502 0.93478 0.97773 0.82077 0.88510 0.89066 0.88906 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.98 5.78 -26.73 -0.15 -2.13 16 3 C -0.10 -1.66 4.73 -26.73 -0.13 -1.79 16 4 C -0.13 -2.53 0.75 -155.66 -0.12 -2.65 16 5 C 0.50 12.15 6.47 -10.99 -0.07 12.08 16 6 O -0.58 -16.32 16.65 5.54 0.09 -16.23 16 7 N -0.44 -10.91 2.67 -105.41 -0.28 -11.19 16 8 C -0.29 -7.71 8.13 -14.93 -0.12 -7.83 16 9 H 0.09 2.52 7.84 -52.49 -0.41 2.10 16 10 C 0.02 0.39 4.41 -17.47 -0.08 0.31 16 11 N -0.82 -19.07 4.24 55.50 0.24 -18.84 16 12 Si 0.91 20.06 29.62 -169.99 -5.03 15.02 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.15 3.32 2.33 -65.74 -0.15 3.17 16 17 C -0.13 -2.67 5.38 -25.08 -0.13 -2.81 16 18 C -0.10 -1.78 6.38 -25.61 -0.16 -1.94 16 19 C -0.09 -1.80 6.30 -25.61 -0.16 -1.96 16 20 C -0.13 -2.80 5.42 -24.87 -0.13 -2.94 16 21 C -0.15 -2.62 9.78 -26.69 -0.26 -2.88 16 22 C -0.17 -2.81 9.10 -26.69 -0.24 -3.05 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.30 7.90 -51.93 -0.41 0.89 16 28 H 0.10 1.74 3.08 -51.93 -0.16 1.58 16 29 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.26 5.82 8.31 -40.82 -0.34 5.49 16 31 H 0.05 1.08 5.58 -51.93 -0.29 0.79 16 32 H 0.12 2.95 5.14 -54.56 -0.28 2.67 16 33 H 0.02 0.45 5.36 -51.93 -0.28 0.17 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.16 3.93 3.67 -90.36 -0.33 3.59 16 40 H 0.10 1.76 8.03 -51.93 -0.42 1.35 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -27.07 320.04 -8.92 -35.99 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.21 Total: 6.50 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.55 Total: -16.08 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: -0.05 Total: -30.03 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.07 -8.92 -35.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384043369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.053 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds