Wall clock time and date at job start Mon Mar 30 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47451 * 2 1 4 4 C 1.52997 * 109.47239 * 183.54267 * 3 2 1 5 5 C 1.50698 * 115.55186 * 292.01903 * 4 3 2 6 6 O 1.21294 * 119.99867 * 112.71855 * 5 4 3 7 7 N 1.34777 * 120.00108 * 292.72002 * 5 4 3 8 8 C 1.37099 * 119.99560 * 184.52669 * 7 5 4 9 9 H 1.07999 * 120.00339 * 37.46309 * 8 7 5 10 10 C 1.38951 * 119.99834 * 217.45571 * 8 7 5 11 11 N 1.31407 * 120.00076 * 335.89514 * 10 8 7 12 12 Si 1.86799 * 120.00059 * 155.89394 * 10 8 7 13 13 H 1.48507 * 109.47073 * 89.99959 * 12 10 8 14 14 H 1.48494 * 109.47408 * 210.00434 * 12 10 8 15 15 H 1.48501 * 109.47188 * 330.00371 * 12 10 8 16 16 C 1.46493 * 120.00186 * 4.53415 * 7 5 4 17 17 C 1.54888 * 110.76218 * 97.56090 * 16 7 5 18 18 C 1.54261 * 104.31395 * 156.32159 * 17 16 7 19 19 C 1.53879 * 106.60129 * 336.32914 * 18 17 16 20 20 C 1.54266 * 106.59468 * 359.97438 * 19 18 17 21 21 C 1.52997 * 117.49813 * 77.69436 * 4 3 2 22 22 C 1.53006 * 117.49698 * 146.35581 * 4 3 2 23 23 H 1.08998 * 109.46857 * 64.94850 * 1 2 3 24 24 H 1.09000 * 109.47221 * 184.94943 * 1 2 3 25 25 H 1.09005 * 109.46807 * 304.94742 * 1 2 3 26 26 H 1.09000 * 109.47106 * 239.99830 * 2 1 3 27 27 H 1.08999 * 109.47351 * 120.00255 * 2 1 3 28 28 H 1.09001 * 109.46408 * 63.54207 * 3 2 1 29 29 H 1.08995 * 109.47087 * 303.54458 * 3 2 1 30 30 H 0.97002 * 120.00011 * 179.97438 * 11 10 8 31 31 H 1.09005 * 110.81320 * 334.22556 * 16 7 5 32 32 H 1.09003 * 110.48222 * 37.58146 * 17 16 7 33 33 H 1.09001 * 110.48659 * 275.07363 * 17 16 7 34 34 H 1.09001 * 110.03202 * 95.61068 * 18 17 16 35 35 H 1.09000 * 110.03662 * 217.03966 * 18 17 16 36 36 H 1.08991 * 110.03328 * 119.28516 * 19 18 17 37 37 H 1.09003 * 110.03065 * 240.66707 * 19 18 17 38 38 H 1.09000 * 110.48082 * 142.29025 * 20 19 18 39 39 H 1.09001 * 110.48923 * 264.79791 * 20 19 18 40 40 H 1.09004 * 117.49962 * 214.99796 * 21 4 3 41 41 H 1.08999 * 117.50067 * 0.02562 * 21 4 3 42 42 H 1.09002 * 117.49899 * 359.97184 * 22 4 3 43 43 H 1.08997 * 117.49741 * 144.97670 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5674 1.4433 -0.0891 5 6 4.2894 0.9081 1.1205 6 8 4.9142 -0.1287 1.0443 7 7 4.2409 1.5815 2.2870 8 6 4.9723 1.1451 3.3613 9 1 5.9581 0.7303 3.2109 10 6 4.4454 1.2365 4.6438 11 7 3.5143 2.1248 4.9097 12 14 5.0606 0.0967 5.9898 13 1 6.2108 0.7279 6.6855 14 1 3.9686 -0.1527 6.9647 15 1 5.4917 -1.1912 5.3892 16 6 3.4065 2.7796 2.4070 17 6 2.0429 2.4363 3.0563 18 6 1.5620 3.7711 3.6619 19 6 2.8194 4.6274 3.8930 20 6 4.0207 3.7827 3.4205 21 6 4.1952 1.1819 -1.4597 22 6 4.2296 2.5889 -0.8575 23 1 -0.3633 0.4351 -0.9310 24 1 -0.3633 -1.0238 0.0887 25 1 -0.3633 0.5887 0.8424 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.7295 1.9376 0.9201 29 1 1.6258 1.9743 -0.8565 30 1 3.1462 2.1884 5.8050 31 1 3.2635 3.2510 1.4346 32 1 2.1704 1.6869 3.8376 33 1 1.3392 2.0838 2.3022 34 1 0.8895 4.2751 2.9678 35 1 1.0542 3.5900 4.6092 36 1 2.7571 5.5469 3.3112 37 1 2.9215 4.8624 4.9525 38 1 4.7615 4.4141 2.9300 39 1 4.4688 3.2529 4.2611 40 1 5.1305 0.6227 -1.4864 41 1 3.5201 1.0097 -2.2979 42 1 3.5770 3.3416 -1.2999 43 1 5.1872 2.9554 -0.4879 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384043369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:55 Heat of formation + Delta-G solvation = 14.082994 kcal Electronic energy + Delta-G solvation = -22407.225358 eV Core-core repulsion = 19454.276936 eV Total energy + Delta-G solvation = -2952.948422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29742 -39.03465 -37.61634 -35.13104 -34.64062 -33.77739 -29.35237 -28.51973 -28.01521 -27.01000 -23.78910 -23.41539 -22.19973 -21.57933 -20.83384 -19.83930 -18.32195 -17.60939 -17.00935 -16.36161 -16.17771 -15.92911 -15.51543 -15.27271 -14.78636 -14.48118 -14.31619 -13.95008 -13.74259 -13.67250 -12.99110 -12.85291 -12.57206 -12.52946 -12.41581 -12.31626 -12.17234 -12.09376 -11.83558 -11.69625 -11.55151 -11.42759 -11.26367 -11.02898 -10.92821 -10.61392 -10.09951 -9.80434 -9.10566 -7.94603 -5.88950 1.35555 1.43640 1.54128 2.07227 2.29536 2.77842 3.02072 3.17202 3.73410 3.95836 3.98279 4.11331 4.27969 4.29867 4.34939 4.44031 4.49815 4.58898 4.72502 4.77706 4.87543 4.90793 4.97505 5.03794 5.09055 5.11009 5.12100 5.18101 5.21953 5.25715 5.32234 5.39332 5.45251 5.50840 5.53416 5.56806 5.68570 5.91854 6.24032 6.26615 6.52718 6.73886 7.27489 7.59352 8.17382 8.59192 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.008949 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.450210 B = 3128.096024 C = 3534.725180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.090 4.090 4 C -0.152 4.152 5 C 0.477 3.523 6 O -0.638 6.638 7 N -0.446 5.446 8 C -0.339 4.339 9 H 0.052 0.948 10 C 0.002 3.998 11 N -0.803 5.803 12 Si 0.960 3.040 13 H -0.272 1.272 14 H -0.269 1.269 15 H -0.296 1.296 16 C 0.151 3.849 17 C -0.124 4.124 18 C -0.088 4.088 19 C -0.087 4.087 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.151 4.151 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.267 0.733 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.047 0.953 38 H -0.001 1.001 39 H 0.138 0.862 40 H 0.072 0.928 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 5.673 -6.013 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.126 4.126 4 C -0.156 4.156 5 C 0.267 3.733 6 O -0.526 6.526 7 N -0.163 5.163 8 C -0.467 4.467 9 H 0.070 0.930 10 C -0.200 4.200 11 N -0.441 5.441 12 Si 0.786 3.214 13 H -0.198 1.198 14 H -0.194 1.194 15 H -0.223 1.223 16 C 0.048 3.952 17 C -0.162 4.162 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.170 4.170 21 C -0.183 4.183 22 C -0.188 4.188 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.154 0.846 40 H 0.091 0.909 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.856 5.278 -5.813 11.107 hybrid contribution 0.947 -0.863 0.889 1.560 sum -6.909 4.415 -4.924 9.564 Atomic orbital electron populations 1.21711 0.93731 1.01900 1.02535 1.21379 0.97060 0.96632 1.00407 1.21585 0.88910 0.97638 1.04501 1.21368 0.96575 1.06019 0.91612 1.20106 0.83626 0.84156 0.85410 1.90451 1.49389 1.26887 1.85839 1.43857 1.40000 1.23086 1.09369 1.19030 0.99700 1.41846 0.86144 0.92976 1.25646 0.97756 0.97183 0.99440 1.70914 1.26248 1.25677 1.21254 0.85461 0.78419 0.79257 0.78284 1.19780 1.19352 1.22268 1.22036 0.91407 0.85052 0.96662 1.23332 0.93632 1.00003 0.99233 1.21698 0.96476 0.95128 0.99345 1.21673 0.94952 0.96424 0.99504 1.23588 0.96836 0.95183 1.01375 1.22958 1.02239 0.98395 0.94748 1.23116 1.01880 0.91837 1.01943 0.90683 0.92586 0.92927 0.92085 0.96164 0.89795 0.88642 0.92052 0.91495 0.89021 0.94597 0.92374 0.93179 0.93190 0.93398 0.98223 0.84604 0.90901 0.85448 0.84965 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.77 16 2 C -0.12 -3.78 5.78 30.59 0.18 -3.61 16 3 C -0.09 -2.83 4.73 30.59 0.14 -2.68 16 4 C -0.15 -5.75 0.75 -52.93 -0.04 -5.79 16 5 C 0.48 24.40 6.47 87.66 0.57 24.97 16 6 O -0.64 -38.43 16.65 -3.07 -0.05 -38.48 16 7 N -0.45 -22.93 2.67 -605.81 -1.62 -24.55 16 8 C -0.34 -19.05 8.13 84.04 0.68 -18.37 16 9 H 0.05 3.22 7.84 -2.91 -0.02 3.20 16 10 C 0.00 0.11 4.41 84.93 0.37 0.48 16 11 N -0.80 -37.11 4.24 21.66 0.09 -37.02 16 12 Si 0.96 42.30 29.62 68.60 2.03 44.34 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 16 C 0.15 6.55 2.33 46.41 0.11 6.66 16 17 C -0.12 -5.02 5.38 31.67 0.17 -4.85 16 18 C -0.09 -3.01 6.38 31.32 0.20 -2.81 16 19 C -0.09 -3.09 6.30 31.32 0.20 -2.89 16 20 C -0.13 -5.72 5.42 31.80 0.17 -5.55 16 21 C -0.15 -4.72 9.78 30.62 0.30 -4.43 16 22 C -0.15 -4.67 9.10 30.62 0.28 -4.39 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.02 0.81 7.90 -2.39 -0.02 0.79 16 28 H 0.08 2.85 3.08 -2.39 -0.01 2.84 16 29 H 0.10 2.31 8.07 -2.39 -0.02 2.29 16 30 H 0.27 11.66 8.31 -92.71 -0.77 10.89 16 31 H 0.07 2.67 5.58 -2.38 -0.01 2.66 16 32 H 0.09 4.35 5.14 -7.59 -0.04 4.31 16 33 H 0.04 1.36 5.36 -2.39 -0.01 1.35 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.14 6.67 3.67 -78.27 -0.29 6.38 16 40 H 0.07 2.70 8.03 -2.39 -0.02 2.68 16 41 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -63.29 320.04 5.18 -58.11 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.68 Total: 23.62 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 4.05 Total: -26.02 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -1.53 Total: -61.57 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.05 Total: -38.48 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.34 kcal Total: -63.29 5.18 -58.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384043369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.194 kcal (2) G-P(sol) polarization free energy of solvation -63.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds