Wall clock time and date at job start Mon Mar 30 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.75541 * 2 1 4 4 C 1.55913 * 110.69622 * 236.82202 * 2 1 3 5 5 N 1.50338 * 106.25049 * 234.88567 * 4 2 1 6 6 C 1.46900 * 111.00208 * 214.77047 * 5 4 2 7 7 C 1.52997 * 109.46826 * 176.31873 * 6 5 4 8 8 C 1.50699 * 115.55003 * 39.44212 * 7 6 5 9 9 H 1.07999 * 120.00451 * 0.30954 * 8 7 6 10 10 C 1.37881 * 119.99849 * 180.31217 * 8 7 6 11 11 N 1.31515 * 120.00159 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99958 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47004 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47193 * 119.99956 * 12 10 8 15 15 H 1.48501 * 109.47179 * 239.99819 * 12 10 8 16 16 C 1.52995 * 117.49954 * 253.72834 * 7 6 5 17 17 C 1.52998 * 60.00458 * 252.51477 * 16 7 6 18 18 C 1.43365 * 102.70766 * 333.46220 * 5 4 2 19 19 H 1.08998 * 108.21969 * 295.95957 * 18 5 4 20 20 C 1.49477 * 130.08024 * 161.67442 * 18 5 4 21 21 O 1.45566 * 105.16068 * 212.25327 * 20 18 5 22 22 C 1.45895 * 109.03178 * 6.02428 * 21 20 18 23 23 C 1.51275 * 110.69220 * 123.17228 * 2 1 3 24 24 H 1.08997 * 111.26585 * 33.43616 * 23 2 1 25 25 H 1.09001 * 109.47218 * 296.83187 * 1 2 3 26 26 H 1.09002 * 109.46693 * 56.83151 * 1 2 3 27 27 H 1.08996 * 109.46972 * 176.82999 * 1 2 3 28 28 H 1.09006 * 109.46740 * 183.17299 * 3 2 1 29 29 H 1.09003 * 109.46603 * 303.16628 * 3 2 1 30 30 H 1.08998 * 109.47143 * 63.17148 * 3 2 1 31 31 H 1.09002 * 110.10247 * 354.07800 * 4 2 1 32 32 H 1.09006 * 110.09963 * 115.69093 * 4 2 1 33 33 H 1.08997 * 109.46701 * 296.32106 * 6 5 4 34 34 H 1.09006 * 109.46896 * 56.32039 * 6 5 4 35 35 H 0.96996 * 119.99802 * 179.97438 * 11 10 8 36 36 H 1.08998 * 117.50107 * 0.02562 * 16 7 6 37 37 H 1.09002 * 117.49928 * 145.02083 * 16 7 6 38 38 H 1.09000 * 117.49621 * 252.51649 * 17 16 7 39 39 H 1.09002 * 117.49834 * 107.48769 * 17 16 7 40 40 H 1.08998 * 110.30315 * 93.33536 * 20 18 5 41 41 H 1.08996 * 110.30228 * 331.17812 * 20 18 5 42 42 H 1.09000 * 110.73379 * 144.15906 * 22 21 20 43 43 H 1.08996 * 110.73360 * 267.28963 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0722 1.4307 0.0000 4 6 2.0811 -0.7982 -1.2207 5 7 3.0064 -1.8411 -0.6585 6 6 4.1415 -2.0790 -1.5601 7 6 5.1058 -3.0757 -0.9138 8 6 4.4599 -4.2139 -0.1667 9 1 3.3834 -4.2870 -0.1193 10 6 5.2433 -5.1621 0.4566 11 7 6.5542 -5.0734 0.3986 12 14 4.4427 -6.5734 1.3821 13 1 2.9655 -6.4460 1.2976 14 1 4.8641 -7.8633 0.7789 15 1 4.8619 -6.5326 2.8061 16 6 6.4249 -2.5282 -0.3653 17 6 6.4178 -3.3653 -1.6459 18 6 3.4425 -1.2461 0.5708 19 1 4.0071 -0.3449 0.3317 20 6 4.0693 -1.8730 1.7743 21 8 3.6022 -1.0811 2.9029 22 6 2.6200 -0.1116 2.4297 23 6 2.0646 -0.7743 1.1845 24 1 1.4113 -1.6090 1.4386 25 1 -0.3634 0.4639 0.9170 26 1 -0.3633 0.5623 -0.8603 27 1 -0.3633 -1.0261 -0.0568 28 1 3.1605 1.4068 -0.0569 29 1 1.6752 1.9696 -0.8603 30 1 1.7673 1.9348 0.9170 31 1 1.2610 -1.2753 -1.7574 32 1 2.6286 -0.1320 -1.8876 33 1 3.7771 -2.4854 -2.5035 34 1 4.6611 -1.1390 -1.7459 35 1 7.1052 -5.7402 0.8373 36 1 6.6056 -1.4579 -0.4643 37 1 6.8258 -2.9911 0.5365 38 1 6.8139 -4.3791 -1.5866 39 1 6.5939 -2.8458 -2.5878 40 1 5.1559 -1.8254 1.7029 41 1 3.7410 -2.9073 1.8762 42 1 1.8349 0.0357 3.1714 43 1 3.0999 0.8358 2.1847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384815451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:49 Heat of formation + Delta-G solvation = 15.512719 kcal Electronic energy + Delta-G solvation = -22300.128627 eV Core-core repulsion = 19347.242202 eV Total energy + Delta-G solvation = -2952.886425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86712 -36.99785 -36.40515 -33.70827 -31.44689 -29.81646 -28.07945 -27.41479 -26.91145 -25.27616 -23.30682 -22.43824 -20.69590 -20.06560 -18.91888 -18.32497 -16.50065 -15.94312 -15.23209 -14.91854 -14.72491 -14.28275 -13.94104 -13.64286 -13.31954 -13.24698 -13.04841 -12.87161 -12.40649 -12.21142 -11.75589 -11.61838 -11.44970 -11.20366 -11.07819 -10.99538 -10.73335 -10.44727 -10.28937 -10.26700 -10.12216 -9.95910 -9.65313 -9.36621 -9.00755 -8.78126 -8.32998 -8.00271 -7.72208 -5.89500 -3.91069 3.32755 3.42198 3.46795 4.04219 4.32697 4.46194 4.54331 4.84405 4.95967 5.13789 5.14703 5.33645 5.48891 5.58742 5.63977 5.66101 5.74906 5.80516 5.84404 5.89178 5.94137 5.97794 6.06036 6.16158 6.17640 6.24822 6.30529 6.37268 6.52767 6.55031 6.65187 6.70829 6.97194 7.02275 7.14854 7.26886 7.29451 7.53948 7.72413 7.85595 8.10995 8.23529 8.60824 9.08841 9.62740 11.07105 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.007644 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.864942 B = 3662.116480 C = 4006.743566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C -0.140 4.140 4 C 0.038 3.962 5 N -0.465 5.465 6 C 0.088 3.912 7 C 0.022 3.978 8 C -0.449 4.449 9 H 0.073 0.927 10 C 0.054 3.946 11 N -0.883 5.883 12 Si 0.889 3.111 13 H -0.272 1.272 14 H -0.287 1.287 15 H -0.285 1.285 16 C -0.192 4.192 17 C -0.188 4.188 18 C 0.062 3.938 19 H 0.026 0.974 20 C 0.077 3.923 21 O -0.398 6.398 22 C 0.064 3.936 23 C -0.141 4.141 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.013 0.987 35 H 0.256 0.744 36 H 0.034 0.966 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.038 0.962 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 10.839 -0.718 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.089 4.089 5 N -0.188 5.188 6 C -0.040 4.040 7 C 0.021 3.979 8 C -0.487 4.487 9 H 0.091 0.909 10 C -0.146 4.146 11 N -0.522 5.522 12 Si 0.717 3.283 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.212 1.212 16 C -0.230 4.230 17 C -0.227 4.227 18 C -0.048 4.048 19 H 0.044 0.956 20 C 0.002 3.998 21 O -0.317 6.317 22 C -0.013 4.013 23 C -0.160 4.160 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.830 10.179 -0.360 13.480 hybrid contribution 0.290 0.035 -0.055 0.297 sum -8.540 10.214 -0.415 13.321 Atomic orbital electron populations 1.21810 0.93822 1.02111 1.01319 1.20813 0.95689 0.94605 0.94671 1.21912 1.00948 0.95233 1.01652 1.23971 0.96947 0.92483 0.95536 1.64161 1.15754 1.36819 1.02114 1.21876 0.90450 0.96443 0.95213 1.18970 0.84923 0.95298 0.98691 1.20621 0.93330 1.05474 1.29232 0.90927 1.25026 0.94878 0.97956 0.96785 1.70021 1.03359 1.34937 1.43933 0.86571 0.79809 0.82346 0.79582 1.19618 1.21326 1.21152 1.22896 1.06567 0.93564 0.99983 1.22804 1.06147 1.01832 0.91879 1.22233 0.94282 0.95549 0.92782 0.95600 1.22223 0.99035 0.95805 0.82785 1.89314 1.59231 1.50330 1.32868 1.22571 0.91500 0.92132 0.95073 1.23126 0.98564 0.99932 0.94415 0.88469 0.92705 0.92817 0.92055 0.92601 0.92580 0.92323 0.90186 0.93730 0.91746 0.96866 0.93358 0.94716 0.87043 0.87124 0.94329 0.89700 0.88822 0.90341 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.39 37.16 0.31 -1.12 16 2 C -0.06 -0.74 0.90 -153.82 -0.14 -0.88 16 3 C -0.14 -1.59 7.27 37.16 0.27 -1.32 16 4 C 0.04 0.57 6.04 -0.34 0.00 0.56 16 5 N -0.46 -8.77 4.47 -223.17 -1.00 -9.77 16 6 C 0.09 1.80 4.90 -3.83 -0.02 1.78 16 7 C 0.02 0.52 1.38 -155.66 -0.22 0.30 16 8 C -0.45 -11.63 6.46 -34.44 -0.22 -11.85 16 9 H 0.07 1.93 7.40 -52.49 -0.39 1.55 16 10 C 0.05 1.43 5.28 -17.82 -0.09 1.33 16 11 N -0.88 -24.09 8.59 55.43 0.48 -23.61 16 12 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C -0.19 -4.65 7.63 -26.73 -0.20 -4.86 16 17 C -0.19 -4.61 9.38 -26.73 -0.25 -4.86 16 18 C 0.06 1.15 1.67 -68.55 -0.11 1.04 16 19 H 0.03 0.49 6.34 -51.93 -0.33 0.16 16 20 C 0.08 1.60 6.01 35.42 0.21 1.81 16 21 O -0.40 -7.69 11.59 -35.23 -0.41 -8.10 16 22 C 0.06 0.96 6.93 36.45 0.25 1.22 16 23 C -0.14 -2.18 2.77 -89.43 -0.25 -2.43 16 24 H 0.10 1.61 7.98 -51.93 -0.41 1.20 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.71 6.78 -51.93 -0.35 0.35 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.60 7.49 -51.93 -0.39 0.21 16 31 H 0.08 1.13 7.75 -51.93 -0.40 0.72 16 32 H 0.04 0.64 7.35 -51.93 -0.38 0.26 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.01 0.26 7.74 -51.93 -0.40 -0.14 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.11 2.99 6.24 -51.93 -0.32 2.66 16 38 H 0.11 2.99 6.31 -51.93 -0.33 2.67 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.90 6.57 -51.93 -0.34 1.56 16 41 H 0.09 2.17 6.93 -51.93 -0.36 1.81 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.81 6.74 -51.93 -0.35 0.46 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -27.09 315.53 -8.93 -36.02 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.28 Total: 3.86 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.46 Total: -19.26 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: -0.52 Total: -33.38 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.41 Total: -8.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.09 -8.93 -36.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384815451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.532 kcal (2) G-P(sol) polarization free energy of solvation -27.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds