Wall clock time and date at job start Mon Mar 30 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.75541 * 2 1 4 4 C 1.55913 * 110.69622 * 236.82202 * 2 1 3 5 5 N 1.50338 * 106.25049 * 234.88567 * 4 2 1 6 6 C 1.46900 * 111.00208 * 214.77047 * 5 4 2 7 7 C 1.52997 * 109.46826 * 176.31873 * 6 5 4 8 8 C 1.50699 * 115.55003 * 39.44212 * 7 6 5 9 9 H 1.07999 * 120.00451 * 0.30954 * 8 7 6 10 10 C 1.37881 * 119.99849 * 180.31217 * 8 7 6 11 11 N 1.31515 * 120.00159 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99958 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47004 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47193 * 119.99956 * 12 10 8 15 15 H 1.48501 * 109.47179 * 239.99819 * 12 10 8 16 16 C 1.52995 * 117.49954 * 253.72834 * 7 6 5 17 17 C 1.52998 * 60.00458 * 252.51477 * 16 7 6 18 18 C 1.43365 * 102.70766 * 333.46220 * 5 4 2 19 19 H 1.08998 * 108.21969 * 295.95957 * 18 5 4 20 20 C 1.49477 * 130.08024 * 161.67442 * 18 5 4 21 21 O 1.45566 * 105.16068 * 212.25327 * 20 18 5 22 22 C 1.45895 * 109.03178 * 6.02428 * 21 20 18 23 23 C 1.51275 * 110.69220 * 123.17228 * 2 1 3 24 24 H 1.08997 * 111.26585 * 33.43616 * 23 2 1 25 25 H 1.09001 * 109.47218 * 296.83187 * 1 2 3 26 26 H 1.09002 * 109.46693 * 56.83151 * 1 2 3 27 27 H 1.08996 * 109.46972 * 176.82999 * 1 2 3 28 28 H 1.09006 * 109.46740 * 183.17299 * 3 2 1 29 29 H 1.09003 * 109.46603 * 303.16628 * 3 2 1 30 30 H 1.08998 * 109.47143 * 63.17148 * 3 2 1 31 31 H 1.09002 * 110.10247 * 354.07800 * 4 2 1 32 32 H 1.09006 * 110.09963 * 115.69093 * 4 2 1 33 33 H 1.08997 * 109.46701 * 296.32106 * 6 5 4 34 34 H 1.09006 * 109.46896 * 56.32039 * 6 5 4 35 35 H 0.96996 * 119.99802 * 179.97438 * 11 10 8 36 36 H 1.08998 * 117.50107 * 0.02562 * 16 7 6 37 37 H 1.09002 * 117.49928 * 145.02083 * 16 7 6 38 38 H 1.09000 * 117.49621 * 252.51649 * 17 16 7 39 39 H 1.09002 * 117.49834 * 107.48769 * 17 16 7 40 40 H 1.08998 * 110.30315 * 93.33536 * 20 18 5 41 41 H 1.08996 * 110.30228 * 331.17812 * 20 18 5 42 42 H 1.09000 * 110.73379 * 144.15906 * 22 21 20 43 43 H 1.08996 * 110.73360 * 267.28963 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0722 1.4307 0.0000 4 6 2.0811 -0.7982 -1.2207 5 7 3.0064 -1.8411 -0.6585 6 6 4.1415 -2.0790 -1.5601 7 6 5.1058 -3.0757 -0.9138 8 6 4.4599 -4.2139 -0.1667 9 1 3.3834 -4.2870 -0.1193 10 6 5.2433 -5.1621 0.4566 11 7 6.5542 -5.0734 0.3986 12 14 4.4427 -6.5734 1.3821 13 1 2.9655 -6.4460 1.2976 14 1 4.8641 -7.8633 0.7789 15 1 4.8619 -6.5326 2.8061 16 6 6.4249 -2.5282 -0.3653 17 6 6.4178 -3.3653 -1.6459 18 6 3.4425 -1.2461 0.5708 19 1 4.0071 -0.3449 0.3317 20 6 4.0693 -1.8730 1.7743 21 8 3.6022 -1.0811 2.9029 22 6 2.6200 -0.1116 2.4297 23 6 2.0646 -0.7743 1.1845 24 1 1.4113 -1.6090 1.4386 25 1 -0.3634 0.4639 0.9170 26 1 -0.3633 0.5623 -0.8603 27 1 -0.3633 -1.0261 -0.0568 28 1 3.1605 1.4068 -0.0569 29 1 1.6752 1.9696 -0.8603 30 1 1.7673 1.9348 0.9170 31 1 1.2610 -1.2753 -1.7574 32 1 2.6286 -0.1320 -1.8876 33 1 3.7771 -2.4854 -2.5035 34 1 4.6611 -1.1390 -1.7459 35 1 7.1052 -5.7402 0.8373 36 1 6.6056 -1.4579 -0.4643 37 1 6.8258 -2.9911 0.5365 38 1 6.8139 -4.3791 -1.5866 39 1 6.5939 -2.8458 -2.5878 40 1 5.1559 -1.8254 1.7029 41 1 3.7410 -2.9073 1.8762 42 1 1.8349 0.0357 3.1714 43 1 3.0999 0.8358 2.1847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384815451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:48 Heat of formation + Delta-G solvation = -0.378662 kcal Electronic energy + Delta-G solvation = -22300.817728 eV Core-core repulsion = 19347.242202 eV Total energy + Delta-G solvation = -2953.575527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19546 -38.73032 -37.86769 -35.09330 -33.43650 -31.18512 -29.47607 -28.53893 -28.23280 -27.11485 -24.71813 -23.71936 -22.63415 -21.58543 -20.76078 -19.47183 -17.96159 -17.78847 -16.89726 -16.53177 -16.09025 -15.80070 -15.39506 -15.13171 -14.67802 -14.63328 -14.28382 -14.24970 -13.96520 -13.46174 -13.15344 -12.98049 -12.88331 -12.64844 -12.58798 -12.37559 -12.34936 -12.18833 -11.98842 -11.92771 -11.46189 -11.39044 -11.23372 -10.95161 -10.75031 -10.52952 -10.25264 -9.98842 -9.17920 -7.94620 -5.99926 1.39061 1.44254 1.53444 2.46466 2.67471 2.98337 3.10033 3.24152 3.77892 3.83037 3.93243 4.14055 4.14752 4.25848 4.34127 4.39196 4.47872 4.54652 4.59620 4.71790 4.73642 4.77755 4.81823 4.87331 4.89744 4.96808 5.06038 5.07861 5.12338 5.15071 5.23267 5.26839 5.32158 5.40604 5.42354 5.52833 5.66514 5.81429 5.98671 6.15195 6.21301 6.30040 6.61058 7.02677 7.55281 9.00200 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.007644 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.864942 B = 3662.116480 C = 4006.743566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.049 4.049 3 C -0.138 4.138 4 C 0.037 3.963 5 N -0.485 5.485 6 C 0.095 3.905 7 C 0.020 3.980 8 C -0.449 4.449 9 H 0.062 0.938 10 C 0.012 3.988 11 N -0.904 5.904 12 Si 0.939 3.061 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.289 1.289 16 C -0.185 4.185 17 C -0.192 4.192 18 C 0.054 3.946 19 H 0.025 0.975 20 C 0.086 3.914 21 O -0.416 6.416 22 C 0.060 3.940 23 C -0.126 4.126 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.253 0.747 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.979 12.858 -1.183 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.090 4.090 5 N -0.209 5.209 6 C -0.032 4.032 7 C 0.019 3.981 8 C -0.486 4.486 9 H 0.081 0.919 10 C -0.186 4.186 11 N -0.544 5.544 12 Si 0.767 3.233 13 H -0.193 1.193 14 H -0.212 1.212 15 H -0.216 1.216 16 C -0.223 4.223 17 C -0.231 4.231 18 C -0.056 4.056 19 H 0.043 0.957 20 C 0.010 3.990 21 O -0.337 6.337 22 C -0.015 4.015 23 C -0.145 4.145 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.021 12.207 -0.830 16.467 hybrid contribution 0.959 -0.580 0.121 1.127 sum -10.063 11.628 -0.709 15.394 Atomic orbital electron populations 1.21779 0.91724 1.02131 1.02980 1.20831 0.97246 0.94927 0.91950 1.21902 0.99934 0.94180 1.03457 1.24092 0.96337 0.91973 0.96563 1.64089 1.15468 1.39220 1.02141 1.21712 0.90503 0.95735 0.95287 1.19086 0.85324 0.95516 0.98157 1.20713 0.92783 1.06061 1.29083 0.91946 1.25591 0.95311 0.99939 0.97752 1.70157 1.04120 1.35405 1.44682 0.85782 0.79121 0.80163 0.78276 1.19314 1.21186 1.21554 1.22662 1.07041 0.93963 0.98630 1.22714 1.06790 1.00653 0.92905 1.22123 0.96213 0.94906 0.92383 0.95675 1.21837 0.97630 0.94706 0.84822 1.89279 1.60490 1.51125 1.32757 1.22875 0.91341 0.91628 0.95685 1.23100 0.96414 0.99872 0.95087 0.89905 0.91327 0.90880 0.92947 0.94137 0.90618 0.90743 0.89231 0.92734 0.91258 0.96062 0.93755 0.93221 0.90016 0.89945 0.92053 0.92324 0.92058 0.87612 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.39 71.98 0.60 -1.65 16 2 C -0.05 -1.10 0.90 -51.74 -0.05 -1.15 16 3 C -0.14 -2.56 7.27 71.98 0.52 -2.04 16 4 C 0.04 1.00 6.04 86.64 0.52 1.52 16 5 N -0.49 -17.80 4.47 -859.97 -3.85 -21.64 16 6 C 0.10 3.82 4.90 86.30 0.42 4.24 16 7 C 0.02 0.95 1.38 -52.93 -0.07 0.88 16 8 C -0.45 -23.70 6.46 25.60 0.17 -23.54 16 9 H 0.06 3.38 7.40 -2.91 -0.02 3.36 16 10 C 0.01 0.65 5.28 84.66 0.45 1.10 16 11 N -0.90 -50.94 8.59 21.45 0.18 -50.75 16 12 Si 0.94 44.42 29.54 68.60 2.03 46.45 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 15 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 16 C -0.18 -9.12 7.63 30.59 0.23 -8.89 16 17 C -0.19 -9.49 9.38 30.60 0.29 -9.20 16 18 C 0.05 1.98 1.67 46.24 0.08 2.06 16 19 H 0.03 0.93 6.34 -2.39 -0.02 0.92 16 20 C 0.09 3.67 6.01 70.86 0.43 4.10 16 21 O -0.42 -16.02 11.59 -148.98 -1.73 -17.74 16 22 C 0.06 1.68 6.93 71.52 0.50 2.18 16 23 C -0.13 -3.62 2.77 -10.02 -0.03 -3.65 16 24 H 0.08 2.64 7.98 -2.39 -0.02 2.62 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.04 0.89 6.78 -2.38 -0.02 0.87 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.17 7.49 -2.39 -0.02 1.15 16 31 H 0.09 2.25 7.75 -2.39 -0.02 2.23 16 32 H 0.05 1.38 7.35 -2.38 -0.02 1.37 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.02 0.81 7.74 -2.38 -0.02 0.79 16 35 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.05 2.26 8.08 -2.39 -0.02 2.24 16 37 H 0.08 4.56 6.24 -2.39 -0.01 4.54 16 38 H 0.08 4.57 6.31 -2.39 -0.02 4.56 16 39 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.06 2.75 6.57 -2.39 -0.02 2.74 16 41 H 0.06 2.97 6.93 -2.39 -0.02 2.95 16 42 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.08 1.86 6.74 -2.39 -0.02 1.85 16 Total: -1.00 -59.72 315.53 1.67 -58.05 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.97 Total: 19.69 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 4.06 Total: -34.04 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -3.66 Total: -72.40 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -1.73 Total: -17.74 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -59.72 1.67 -58.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384815451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.672 kcal (2) G-P(sol) polarization free energy of solvation -59.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds