Wall clock time and date at job start Mon Mar 30 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34513 * 125.79183 * 2 1 4 4 C 1.41384 * 106.83821 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.57713 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46959 * 220.02308 * 5 4 3 7 7 C 1.53000 * 109.47083 * 100.02093 * 5 4 3 8 8 N 1.46901 * 109.47121 * 340.02549 * 5 4 3 9 9 C 1.46903 * 110.99880 * 205.00533 * 8 5 4 10 10 C 1.52999 * 109.47276 * 180.02562 * 9 8 5 11 11 C 1.52999 * 109.47209 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46961 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47020 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00140 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00257 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00402 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99566 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47067 * 90.00507 * 17 15 13 19 19 H 1.48507 * 109.47106 * 210.00087 * 17 15 13 20 20 H 1.48500 * 109.47163 * 330.00357 * 17 15 13 21 21 C 1.34509 * 106.84212 * 0.22513 * 4 3 2 22 22 C 1.50696 * 125.78935 * 179.77374 * 21 4 3 23 23 O 1.34296 * 125.78636 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47370 * 89.99746 * 1 2 3 25 25 H 1.09002 * 109.47253 * 210.00286 * 1 2 3 26 26 H 1.09004 * 109.46879 * 330.00186 * 1 2 3 27 27 H 1.07993 * 126.57731 * 0.05467 * 3 2 1 28 28 H 1.08992 * 109.47399 * 299.99938 * 7 5 4 29 29 H 1.09004 * 109.46724 * 60.00424 * 7 5 4 30 30 H 1.09001 * 109.47194 * 179.97438 * 7 5 4 31 31 H 1.00892 * 111.00435 * 81.04369 * 8 5 4 32 32 H 1.09003 * 109.46525 * 299.99167 * 9 8 5 33 33 H 1.08991 * 109.47692 * 59.99249 * 9 8 5 34 34 H 1.09003 * 109.46846 * 299.99603 * 10 9 8 35 35 H 1.09006 * 109.47089 * 59.99482 * 10 9 8 36 36 H 1.08989 * 109.47450 * 299.99983 * 11 10 9 37 37 H 1.08997 * 109.46772 * 60.00228 * 11 10 9 38 38 H 1.09003 * 109.47357 * 300.00468 * 12 11 10 39 39 H 1.09006 * 109.46826 * 60.00498 * 12 11 10 40 40 H 0.96996 * 119.99868 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47121 * 89.99982 * 22 21 4 42 42 H 1.09001 * 109.47428 * 209.99720 * 22 21 4 43 43 H 1.08997 * 109.47183 * 329.99857 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 4.8733 1.4848 -0.0014 6 1 5.6179 1.0415 -0.6626 7 6 5.4366 1.5667 1.4188 8 7 4.5401 2.8350 -0.4745 9 6 5.7190 3.4977 -1.0481 10 6 5.3336 4.8984 -1.5282 11 6 6.5616 5.5888 -2.1249 12 6 6.1760 6.9893 -2.6056 13 6 7.3854 7.6691 -3.1940 14 1 8.3343 7.1540 -3.2219 15 6 7.2809 8.9491 -3.6957 16 7 8.3362 9.5422 -4.2096 17 14 5.6398 9.8403 -3.6467 18 1 5.5251 10.5965 -2.3738 19 1 5.5537 10.7823 -4.7915 20 1 4.5363 8.8506 -3.7358 21 6 3.5814 -0.7123 -0.0060 22 6 4.7705 -1.6380 -0.0134 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9666 2.1203 0.0008 28 1 4.6920 2.0100 2.0800 29 1 5.6839 0.5648 1.7699 30 1 6.3355 2.1832 1.4182 31 1 4.1386 3.3892 0.2668 32 1 6.4972 3.5757 -0.2888 33 1 6.0903 2.9139 -1.8903 34 1 4.5552 4.8209 -2.2872 35 1 4.9627 5.4820 -0.6855 36 1 7.3397 5.6663 -1.3657 37 1 6.9328 5.0054 -2.9674 38 1 5.3980 6.9114 -3.3650 39 1 5.8045 7.5730 -1.7632 40 1 8.2626 10.4429 -4.5622 41 1 5.0603 -1.8654 1.0124 42 1 4.5089 -2.5614 -0.5302 43 1 5.6023 -1.1568 -0.5278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385388627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:54 Heat of formation + Delta-G solvation = -17.884449 kcal Electronic energy + Delta-G solvation = -19456.882482 eV Core-core repulsion = 16502.547847 eV Total energy + Delta-G solvation = -2954.334635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.70274 -37.64890 -35.01457 -33.20992 -33.09906 -31.99259 -30.12687 -29.60865 -27.81923 -25.08597 -24.36999 -22.91241 -21.45306 -20.88543 -20.00197 -19.15997 -16.70331 -16.51005 -16.38458 -15.61016 -15.05454 -14.75433 -14.21872 -14.07647 -13.65254 -13.55662 -13.49577 -13.21163 -12.89571 -12.87595 -12.65025 -12.48787 -12.44389 -12.22024 -11.88036 -11.74127 -11.42130 -11.22458 -11.11188 -10.73930 -10.55930 -9.85212 -9.64860 -9.62440 -9.43750 -9.11881 -8.49976 -8.42866 -8.20754 -6.00627 -3.98079 1.61315 2.54112 2.80640 3.33665 3.40859 3.45916 4.11419 4.49102 4.50420 4.66938 4.85683 4.96344 5.02903 5.10439 5.18288 5.22223 5.22739 5.32301 5.34747 5.37399 5.45967 5.48565 5.57154 5.61131 5.81987 5.83645 5.90467 6.03684 6.09854 6.11763 6.21875 6.40862 6.50722 6.70094 6.80319 6.94106 7.08853 7.17243 7.37240 7.40574 7.51066 7.84865 8.58823 9.04744 9.62506 11.13035 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.002963 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.011219 B = 9448.340223 C =10080.912164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.179 4.179 4 C -0.153 4.153 5 C 0.153 3.847 6 H 0.083 0.917 7 C -0.177 4.177 8 N -0.682 5.682 9 C 0.060 3.940 10 C -0.118 4.118 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.026 4.026 22 C -0.071 4.071 23 O -0.178 6.178 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.148 0.852 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.340 0.660 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 -22.443 11.901 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.198 4.198 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.101 0.899 7 C -0.236 4.236 8 N -0.312 5.312 9 C -0.069 4.069 10 C -0.156 4.156 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.076 4.076 22 C -0.127 4.127 23 O -0.076 6.076 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.166 0.834 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.877 -22.784 11.195 28.465 hybrid contribution -0.211 1.052 0.752 1.310 sum -13.088 -21.732 11.947 28.041 Atomic orbital electron populations 1.20246 0.85363 1.03664 1.03339 1.22341 0.93824 0.84216 1.07673 1.21352 0.91840 0.99323 1.07273 1.20081 0.95655 0.92418 1.07309 1.19783 0.92107 0.89291 0.94548 0.89876 1.22469 1.01261 1.02392 0.97462 1.60493 1.30496 1.02527 1.37681 1.22085 0.90616 0.95844 0.98338 1.21666 0.99808 0.93513 1.00605 1.21410 0.95535 0.97589 0.99369 1.19570 0.97354 0.92434 0.95776 1.21197 0.96172 0.99620 1.38757 0.91142 1.25054 0.96402 0.97425 0.94786 1.69922 1.29246 1.14150 1.41229 0.86758 0.85086 0.79700 0.77626 1.20373 1.21448 1.18945 1.22030 0.83290 0.94082 1.08173 1.20267 0.91592 0.97727 1.03138 1.83913 1.16183 1.35061 1.72427 0.90320 0.90969 0.89503 0.83422 0.92324 0.92130 0.92125 0.84193 0.95316 0.91167 0.91667 0.92791 0.93087 0.92830 0.96654 0.97234 0.92815 0.90424 0.90787 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.01 0.38 -0.12 16 2 C -0.03 -0.34 7.32 -35.62 -0.26 -0.60 16 3 C -0.18 -2.09 10.20 -39.70 -0.41 -2.49 16 4 C -0.15 -1.78 5.30 -104.74 -0.55 -2.34 16 5 C 0.15 1.67 2.72 -68.86 -0.19 1.48 16 6 H 0.08 0.90 7.14 -51.93 -0.37 0.53 16 7 C -0.18 -1.66 9.14 37.16 0.34 -1.32 16 8 N -0.68 -8.39 5.77 -107.95 -0.62 -9.01 16 9 C 0.06 0.81 5.48 -3.82 -0.02 0.79 16 10 C -0.12 -1.91 5.47 -26.73 -0.15 -2.06 16 11 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.79 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 17 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 21 C -0.03 -0.28 7.32 -35.63 -0.26 -0.54 16 22 C -0.07 -0.53 10.21 36.00 0.37 -0.16 16 23 O -0.18 -2.13 10.65 5.72 0.06 -2.07 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.15 1.63 8.05 -52.49 -0.42 1.21 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 31 H 0.34 3.93 8.47 -39.30 -0.33 3.60 16 32 H 0.03 0.38 7.44 -51.93 -0.39 -0.01 16 33 H 0.07 0.97 8.05 -51.93 -0.42 0.56 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 1.01 8.14 -51.94 -0.42 0.59 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.58 7.36 -51.93 -0.38 0.19 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -32.59 351.10 -8.30 -40.89 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.70 Total: -1.24 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -1.43 Total: -23.68 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.15 Total: -36.74 kcal Atomic # 8 Polarization: -2.13 SS G_CDS: 0.06 Total: -2.07 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.59 -8.30 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385388627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.006 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds