Wall clock time and date at job start Mon Mar 30 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34513 * 125.79183 * 2 1 4 4 C 1.41384 * 106.83821 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.57713 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46959 * 220.02308 * 5 4 3 7 7 C 1.53000 * 109.47083 * 100.02093 * 5 4 3 8 8 N 1.46901 * 109.47121 * 340.02549 * 5 4 3 9 9 C 1.46903 * 110.99880 * 205.00533 * 8 5 4 10 10 C 1.52999 * 109.47276 * 180.02562 * 9 8 5 11 11 C 1.52999 * 109.47209 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46961 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47020 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00140 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00257 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00402 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99566 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47067 * 90.00507 * 17 15 13 19 19 H 1.48507 * 109.47106 * 210.00087 * 17 15 13 20 20 H 1.48500 * 109.47163 * 330.00357 * 17 15 13 21 21 C 1.34509 * 106.84212 * 0.22513 * 4 3 2 22 22 C 1.50696 * 125.78935 * 179.77374 * 21 4 3 23 23 O 1.34296 * 125.78636 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47370 * 89.99746 * 1 2 3 25 25 H 1.09002 * 109.47253 * 210.00286 * 1 2 3 26 26 H 1.09004 * 109.46879 * 330.00186 * 1 2 3 27 27 H 1.07993 * 126.57731 * 0.05467 * 3 2 1 28 28 H 1.08992 * 109.47399 * 299.99938 * 7 5 4 29 29 H 1.09004 * 109.46724 * 60.00424 * 7 5 4 30 30 H 1.09001 * 109.47194 * 179.97438 * 7 5 4 31 31 H 1.00892 * 111.00435 * 81.04369 * 8 5 4 32 32 H 1.09003 * 109.46525 * 299.99167 * 9 8 5 33 33 H 1.08991 * 109.47692 * 59.99249 * 9 8 5 34 34 H 1.09003 * 109.46846 * 299.99603 * 10 9 8 35 35 H 1.09006 * 109.47089 * 59.99482 * 10 9 8 36 36 H 1.08989 * 109.47450 * 299.99983 * 11 10 9 37 37 H 1.08997 * 109.46772 * 60.00228 * 11 10 9 38 38 H 1.09003 * 109.47357 * 300.00468 * 12 11 10 39 39 H 1.09006 * 109.46826 * 60.00498 * 12 11 10 40 40 H 0.96996 * 119.99868 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47121 * 89.99982 * 22 21 4 42 42 H 1.09001 * 109.47428 * 209.99720 * 22 21 4 43 43 H 1.08997 * 109.47183 * 329.99857 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 4.8733 1.4848 -0.0014 6 1 5.6179 1.0415 -0.6626 7 6 5.4366 1.5667 1.4188 8 7 4.5401 2.8350 -0.4745 9 6 5.7190 3.4977 -1.0481 10 6 5.3336 4.8984 -1.5282 11 6 6.5616 5.5888 -2.1249 12 6 6.1760 6.9893 -2.6056 13 6 7.3854 7.6691 -3.1940 14 1 8.3343 7.1540 -3.2219 15 6 7.2809 8.9491 -3.6957 16 7 8.3362 9.5422 -4.2096 17 14 5.6398 9.8403 -3.6467 18 1 5.5251 10.5965 -2.3738 19 1 5.5537 10.7823 -4.7915 20 1 4.5363 8.8506 -3.7358 21 6 3.5814 -0.7123 -0.0060 22 6 4.7705 -1.6380 -0.0134 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9666 2.1203 0.0008 28 1 4.6920 2.0100 2.0800 29 1 5.6839 0.5648 1.7699 30 1 6.3355 2.1832 1.4182 31 1 4.1386 3.3892 0.2668 32 1 6.4972 3.5757 -0.2888 33 1 6.0903 2.9139 -1.8903 34 1 4.5552 4.8209 -2.2872 35 1 4.9627 5.4820 -0.6855 36 1 7.3397 5.6663 -1.3657 37 1 6.9328 5.0054 -2.9674 38 1 5.3980 6.9114 -3.3650 39 1 5.8045 7.5730 -1.7632 40 1 8.2626 10.4429 -4.5622 41 1 5.0603 -1.8654 1.0124 42 1 4.5089 -2.5614 -0.5302 43 1 5.6023 -1.1568 -0.5278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385388627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:54 Heat of formation + Delta-G solvation = -37.400128 kcal Electronic energy + Delta-G solvation = -19457.728745 eV Core-core repulsion = 16502.547847 eV Total energy + Delta-G solvation = -2955.180898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.51008 -38.63505 -36.51075 -34.78136 -33.81373 -33.53811 -31.35527 -30.25133 -29.22314 -26.16595 -25.56775 -23.85861 -22.83025 -21.88643 -21.60136 -20.02438 -18.84300 -17.38179 -17.19263 -16.73691 -16.37615 -16.02716 -15.64279 -15.19009 -14.83634 -14.49056 -14.27094 -14.15812 -13.99456 -13.76863 -13.63028 -13.55281 -13.43464 -13.29631 -13.15958 -12.88597 -12.68261 -12.40126 -12.27917 -12.12039 -12.02939 -11.74426 -11.36778 -11.32258 -11.17755 -10.76142 -10.44118 -9.36365 -8.99551 -8.29606 -6.33632 0.82094 1.35664 1.38031 1.50663 1.71192 2.08630 2.36707 3.05756 3.14625 3.81011 3.89516 4.07350 4.15527 4.18089 4.31038 4.34806 4.44124 4.47035 4.53996 4.60455 4.67805 4.71969 4.75266 4.78000 4.81637 4.90114 4.92632 5.00718 5.07511 5.13201 5.17762 5.22080 5.27717 5.29126 5.43831 5.58700 5.66351 5.68900 5.71521 6.12804 6.29587 6.32054 6.48223 6.74755 7.31236 8.87422 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.002963 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.011219 B = 9448.340223 C =10080.912164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.038 4.038 3 C -0.200 4.200 4 C -0.170 4.170 5 C 0.156 3.844 6 H 0.083 0.917 7 C -0.170 4.170 8 N -0.687 5.687 9 C 0.070 3.930 10 C -0.106 4.106 11 C -0.094 4.094 12 C -0.012 4.012 13 C -0.535 4.535 14 H 0.030 0.970 15 C 0.000 4.000 16 N -0.954 5.954 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.247 1.247 21 C -0.035 4.035 22 C -0.071 4.071 23 O -0.192 6.192 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.149 0.851 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.345 0.655 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.266 0.734 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -23.216 12.946 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.220 4.220 4 C -0.172 4.172 5 C 0.046 3.954 6 H 0.101 0.899 7 C -0.229 4.229 8 N -0.317 5.317 9 C -0.059 4.059 10 C -0.144 4.144 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.573 4.573 14 H 0.048 0.952 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.171 1.171 21 C -0.085 4.085 22 C -0.127 4.127 23 O -0.090 6.090 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.167 0.833 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.163 0.837 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.846 -23.580 12.255 30.440 hybrid contribution 0.477 1.245 0.410 1.395 sum -14.368 -22.334 12.665 29.422 Atomic orbital electron populations 1.20399 0.83012 1.04909 1.04225 1.22988 0.95299 0.83795 1.06669 1.21520 0.92307 0.99713 1.08421 1.20247 0.95867 0.92959 1.08152 1.19772 0.91966 0.88274 0.95358 0.89891 1.22395 1.00985 1.03130 0.96399 1.60415 1.29876 1.03138 1.38308 1.21875 0.91228 0.94302 0.98497 1.21481 0.97546 0.94806 1.00539 1.21283 0.97277 0.95497 0.99208 1.19543 0.95153 0.94539 0.95747 1.21577 0.96524 1.00053 1.39127 0.95166 1.26082 1.00822 0.98450 0.94244 1.70077 1.32002 1.14850 1.42519 0.85602 0.79946 0.78557 0.78198 1.19002 1.20931 1.17063 1.22631 0.83752 0.94631 1.07464 1.20415 0.90446 0.97504 1.04374 1.83925 1.16788 1.35698 1.72633 0.89500 0.89890 0.88094 0.83321 0.92536 0.90936 0.92117 0.83675 0.94632 0.91538 0.92091 0.91884 0.93344 0.93572 0.96478 0.96375 0.92506 0.88877 0.89943 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.42 71.24 0.74 -0.13 16 2 C -0.04 -0.79 7.32 24.83 0.18 -0.61 16 3 C -0.20 -4.51 10.20 22.19 0.23 -4.28 16 4 C -0.17 -3.79 5.30 -19.94 -0.11 -3.89 16 5 C 0.16 3.18 2.72 44.17 0.12 3.30 16 6 H 0.08 1.68 7.14 -2.39 -0.02 1.66 16 7 C -0.17 -2.89 9.14 71.98 0.66 -2.24 16 8 N -0.69 -15.79 5.77 -495.45 -2.86 -18.65 16 9 C 0.07 1.78 5.48 86.30 0.47 2.26 16 10 C -0.11 -3.24 5.47 30.59 0.17 -3.07 16 11 C -0.09 -3.71 5.15 30.60 0.16 -3.55 16 12 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 13 C -0.53 -31.82 9.66 25.60 0.25 -31.57 16 14 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 15 C 0.00 0.02 5.47 84.65 0.46 0.48 16 16 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 17 Si 0.95 45.26 27.47 68.60 1.88 47.14 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 21 C -0.04 -0.73 7.32 24.83 0.18 -0.55 16 22 C -0.07 -0.94 10.21 71.23 0.73 -0.21 16 23 O -0.19 -4.42 10.65 -2.44 -0.03 -4.45 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 26 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.15 3.17 8.05 -2.91 -0.02 3.15 16 28 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 31 H 0.34 7.36 8.47 -89.70 -0.76 6.60 16 32 H 0.04 0.86 7.44 -2.39 -0.02 0.85 16 33 H 0.07 1.75 8.05 -2.39 -0.02 1.74 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 39 H 0.02 0.83 7.57 -2.38 -0.02 0.82 16 40 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 1.08 7.36 -2.39 -0.02 1.07 16 Total: -1.00 -70.50 351.10 3.81 -66.69 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.15 Total: 14.67 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 4.36 Total: -44.53 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -2.56 Total: -79.52 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.03 Total: -4.45 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -70.50 3.81 -66.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385388627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.286 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds