Wall clock time and date at job start Mon Mar 30 2020 07:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46635 * 2 1 4 4 C 1.52997 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47261 * 54.99964 * 4 3 2 6 6 O 1.42905 * 109.47264 * 294.99875 * 4 3 2 7 7 C 1.50699 * 109.47078 * 174.99999 * 4 3 2 8 8 C 1.40891 * 126.29049 * 84.68844 * 7 4 3 9 9 C 1.34854 * 107.41228 * 179.83042 * 8 7 4 10 10 N 1.36340 * 108.21988 * 0.43022 * 9 8 7 11 11 C 1.46503 * 125.63429 * 179.75884 * 10 9 8 12 12 C 1.53002 * 109.47235 * 269.96150 * 11 10 9 13 13 C 1.52994 * 109.47066 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46835 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.46846 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00283 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99878 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00045 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47129 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47187 * 119.99897 * 19 17 15 22 22 H 1.48496 * 109.47330 * 240.00019 * 19 17 15 23 23 C 1.34851 * 126.28886 * 264.99585 * 7 4 3 24 24 H 1.09000 * 109.47679 * 59.99939 * 1 2 3 25 25 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47300 * 299.99757 * 1 2 3 27 27 H 1.08998 * 109.46991 * 240.00270 * 2 1 3 28 28 H 1.09000 * 109.47229 * 119.99774 * 2 1 3 29 29 H 1.08998 * 109.47211 * 60.00404 * 3 2 1 30 30 H 1.09000 * 109.47128 * 299.99836 * 3 2 1 31 31 H 0.96702 * 113.99404 * 300.00214 * 6 4 3 32 32 H 1.07998 * 126.29194 * 359.96434 * 8 7 4 33 33 H 1.08009 * 125.88460 * 180.15467 * 9 8 7 34 34 H 1.08998 * 109.47053 * 29.95864 * 11 10 9 35 35 H 1.08999 * 109.47194 * 149.96015 * 11 10 9 36 36 H 1.09007 * 109.46685 * 299.99905 * 12 11 10 37 37 H 1.08999 * 109.47140 * 59.99832 * 12 11 10 38 38 H 1.08994 * 109.47647 * 299.99542 * 13 12 11 39 39 H 1.08999 * 109.47243 * 59.99939 * 13 12 11 40 40 H 1.08998 * 109.47237 * 299.99957 * 14 13 12 41 41 H 1.08995 * 109.47479 * 60.00235 * 14 13 12 42 42 H 0.96998 * 120.00257 * 179.97438 * 18 17 15 43 43 H 1.08002 * 125.89256 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9329 0.8533 -0.8427 6 8 4.0468 0.8731 1.2202 7 6 4.0721 2.8581 -0.1245 8 6 4.2514 3.7746 0.9304 9 6 4.7181 4.9207 0.3944 10 7 4.8244 4.7484 -0.9539 11 6 5.2895 5.7570 -1.9092 12 6 4.0967 6.5745 -2.4090 13 6 4.5826 7.6282 -3.4062 14 6 3.3896 8.4453 -3.9065 15 6 3.8682 9.4828 -4.8892 16 1 4.9179 9.5522 -5.1329 17 6 2.9656 10.3435 -5.4772 18 7 1.6871 10.2587 -5.1808 19 14 3.5587 11.6299 -6.6947 20 1 5.0307 11.5180 -6.8553 21 1 2.9000 11.4101 -8.0074 22 1 3.2170 12.9840 -6.1900 23 6 4.4270 3.4820 -1.2661 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7617 1.3475 2.0131 32 1 4.0536 3.5921 1.9764 33 1 4.9611 5.8213 0.9388 34 1 6.0040 6.4188 -1.4198 35 1 5.7709 5.2632 -2.7534 36 1 3.3822 5.9126 -2.8985 37 1 3.6154 7.0683 -1.5649 38 1 5.2968 8.2900 -2.9165 39 1 5.0642 7.1348 -4.2504 40 1 2.6757 7.7833 -4.3964 41 1 2.9077 8.9387 -3.0625 42 1 1.0522 10.8644 -5.5941 43 1 4.4014 3.0526 -2.2567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385845337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:28 Heat of formation + Delta-G solvation = -60.651816 kcal Electronic energy + Delta-G solvation = -19265.963332 eV Core-core repulsion = 16309.774165 eV Total energy + Delta-G solvation = -2956.189167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.14053 -38.62696 -36.90962 -34.97084 -34.91791 -32.98450 -30.91527 -29.72514 -28.58820 -26.59680 -24.57038 -23.53635 -22.07002 -21.89730 -20.97981 -20.54135 -18.50516 -18.30555 -16.83341 -16.55138 -16.49608 -16.33138 -15.69312 -15.22105 -14.87574 -14.70766 -14.44844 -14.21477 -13.96002 -13.84515 -13.46825 -13.25875 -13.03584 -12.88454 -12.67570 -12.59830 -12.39334 -12.31005 -12.24639 -12.21332 -11.67022 -11.48760 -11.48123 -11.38540 -11.14172 -10.87592 -10.58882 -9.34955 -8.96382 -8.22584 -6.34236 1.38683 1.38857 1.39785 1.52368 2.04862 2.11885 2.39286 3.10753 3.69169 3.77858 3.94142 3.97944 4.13098 4.17525 4.22627 4.30893 4.34524 4.38305 4.53672 4.55569 4.66919 4.73110 4.78863 4.80580 4.94671 4.99847 5.02598 5.08490 5.21983 5.23356 5.27669 5.31227 5.35882 5.50675 5.51117 5.60887 5.71514 5.83403 6.10521 6.21490 6.36691 6.53655 6.84071 6.91303 7.35742 8.89485 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.002864 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.116594 B = 9775.840216 C =10534.831828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.137 4.137 4 C 0.188 3.812 5 H 0.095 0.905 6 O -0.569 6.569 7 C -0.214 4.214 8 C -0.206 4.206 9 C -0.025 4.025 10 N -0.446 5.446 11 C 0.111 3.889 12 C -0.119 4.119 13 C -0.095 4.095 14 C 0.022 3.978 15 C -0.543 4.543 16 H 0.063 0.937 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.020 4.020 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.383 0.617 32 H 0.148 0.852 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.059 0.941 40 H -0.013 1.013 41 H -0.012 1.012 42 H 0.263 0.737 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -17.747 12.065 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.175 4.175 4 C 0.128 3.872 5 H 0.113 0.887 6 O -0.376 6.376 7 C -0.221 4.221 8 C -0.231 4.231 9 C -0.155 4.155 10 N -0.121 5.121 11 C -0.010 4.010 12 C -0.157 4.157 13 C -0.133 4.133 14 C -0.015 4.015 15 C -0.580 4.580 16 H 0.082 0.918 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.183 1.183 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.232 0.768 32 H 0.166 0.834 33 H 0.191 0.809 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.072 0.928 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.457 -17.833 11.373 21.615 hybrid contribution -0.578 1.438 -0.381 1.596 sum 3.880 -16.395 10.992 20.116 Atomic orbital electron populations 1.21788 0.95644 1.01923 1.01693 1.21460 0.95818 0.95987 1.02323 1.22213 0.95155 0.97503 1.02584 1.20054 0.91984 0.87919 0.87243 0.88682 1.86505 1.77681 1.57051 1.16335 1.20339 1.10055 0.98097 0.93580 1.20859 1.09253 0.93588 0.99367 1.22212 1.08689 1.01444 0.83147 1.44348 1.49558 1.11127 1.07021 1.21993 0.96582 0.89823 0.92630 1.21835 0.97617 0.97369 0.98903 1.21365 0.98184 0.96210 0.97511 1.19023 0.93972 0.94044 0.94499 1.21768 0.94346 1.16825 1.25107 0.91834 1.26031 0.94980 1.00108 0.99021 1.70111 1.02940 1.39462 1.45085 0.85383 0.78978 0.78321 0.78279 1.18329 1.20456 1.20434 1.21903 1.07463 0.85641 1.00105 0.93157 0.92078 0.92746 0.92109 0.91542 0.91685 0.91962 0.76807 0.83442 0.80862 0.87792 0.87982 0.92970 0.92876 0.92118 0.92180 0.99442 0.99409 0.92798 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.90 5.83 30.60 0.18 -1.72 16 3 C -0.14 -2.47 4.88 30.60 0.15 -2.32 16 4 C 0.19 3.75 3.43 29.85 0.10 3.85 16 5 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 6 O -0.57 -11.39 12.77 -148.98 -1.90 -13.29 16 7 C -0.21 -4.99 5.18 -19.99 -0.10 -5.09 16 8 C -0.21 -4.70 10.25 22.14 0.23 -4.47 16 9 C -0.02 -0.59 11.43 83.21 0.95 0.36 16 10 N -0.45 -11.11 2.75 -524.46 -1.44 -12.55 16 11 C 0.11 2.62 6.09 86.38 0.53 3.14 16 12 C -0.12 -3.73 5.54 30.59 0.17 -3.56 16 13 C -0.09 -3.59 5.15 30.59 0.16 -3.43 16 14 C 0.02 1.13 4.97 29.85 0.15 1.28 16 15 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 18 N -0.94 -57.20 13.29 21.45 0.28 -56.92 16 19 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 C -0.02 -0.50 11.35 83.21 0.94 0.44 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.07 7.82 -2.39 -0.02 1.05 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.38 5.44 8.30 -74.06 -0.62 4.83 16 32 H 0.15 2.66 7.71 -2.91 -0.02 2.64 16 33 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 42 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -66.84 356.37 4.16 -62.68 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.33 Total: 17.29 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 4.86 Total: -43.15 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -1.16 Total: -69.47 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.90 Total: -13.29 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.84 4.16 -62.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385845337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.031 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds