Wall clock time and date at job start Mon Mar 30 2020 06:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52995 * 109.47234 * 175.00265 * 4 2 1 6 6 H 1.09002 * 115.55083 * 330.58010 * 5 4 2 7 7 C 1.53003 * 117.50119 * 116.25023 * 5 4 2 8 8 C 1.53006 * 117.50178 * 184.91322 * 5 4 2 9 9 H 1.09003 * 117.49141 * 359.97438 * 8 5 4 10 10 C 1.50697 * 117.50120 * 144.99278 * 8 5 4 11 11 O 1.21280 * 119.99726 * 0.02562 * 10 8 5 12 12 N 1.34774 * 119.99686 * 180.02562 * 10 8 5 13 13 C 1.46504 * 119.99936 * 180.02562 * 12 10 8 14 14 C 1.50693 * 109.47151 * 89.99657 * 13 12 10 15 15 H 1.07996 * 120.00444 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99683 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00175 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47210 * 59.99925 * 18 16 14 20 20 H 1.48500 * 109.47338 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47162 * 299.99765 * 18 16 14 22 22 C 1.46502 * 120.00058 * 0.02562 * 12 10 8 23 23 C 1.53001 * 117.49574 * 188.62311 * 22 12 10 24 24 C 1.53001 * 117.49751 * 120.00081 * 22 12 10 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 32 32 H 1.09007 * 109.46744 * 294.99886 * 4 2 1 33 33 H 1.08995 * 109.46794 * 55.00131 * 4 2 1 34 34 H 1.09000 * 117.49887 * 214.97316 * 7 5 4 35 35 H 1.08997 * 117.49748 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.46840 * 210.00305 * 13 12 10 37 37 H 1.09007 * 109.46831 * 329.99711 * 13 12 10 38 38 H 0.96999 * 119.99798 * 180.02562 * 17 16 14 39 39 H 1.08992 * 115.55110 * 334.32589 * 22 12 10 40 40 H 1.09000 * 117.50252 * 0.02562 * 23 22 12 41 41 H 1.08998 * 117.50161 * 145.02519 * 23 22 12 42 42 H 1.09000 * 117.49787 * 214.97860 * 24 22 12 43 43 H 1.09003 * 117.49784 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.9926 -0.8819 0.1868 7 6 4.3696 -0.0989 2.2638 8 6 4.2610 -1.6255 2.2949 9 1 3.6326 -2.0696 3.0670 10 6 5.4856 -2.4184 1.9174 11 8 5.8842 -2.4100 0.7720 12 7 6.1378 -3.1369 2.8527 13 6 7.3287 -3.9074 2.4859 14 6 8.5547 -3.0473 2.6535 15 1 8.4568 -2.0289 2.9990 16 6 9.8016 -3.5607 2.3656 17 7 9.9209 -4.8012 1.9452 18 14 11.3214 -2.4949 2.5739 19 1 11.4307 -2.0599 3.9896 20 1 12.5284 -3.2754 2.2008 21 1 11.2134 -1.3018 1.6964 22 6 5.6560 -3.1475 4.2362 23 6 6.5454 -3.8120 5.2889 24 6 5.2553 -4.4975 4.8344 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 5.3271 0.3315 1.9704 35 1 3.8127 0.4606 3.0154 36 1 7.4079 -4.7827 3.1306 37 1 7.2486 -4.2275 1.4470 38 1 10.7981 -5.1625 1.7430 39 1 5.0830 -2.2719 4.5411 40 1 7.4893 -4.2410 4.9523 41 1 6.5577 -3.3736 6.2868 42 1 4.4188 -4.5100 5.5331 43 1 5.3498 -5.3778 4.1984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387724654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:48 Heat of formation + Delta-G solvation = -5.515704 kcal Electronic energy + Delta-G solvation = -20404.171369 eV Core-core repulsion = 17450.373084 eV Total energy + Delta-G solvation = -2953.798286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.58932 -37.73827 -36.54280 -34.79440 -33.17406 -31.90329 -28.13998 -27.23013 -27.15365 -24.06392 -22.51160 -21.89327 -21.41006 -20.76695 -20.00694 -18.03506 -16.97032 -16.38302 -15.47138 -15.14688 -14.86306 -14.49041 -14.10971 -13.89785 -13.76079 -13.50526 -13.12006 -12.60069 -12.34209 -12.15926 -12.06789 -11.54006 -11.45214 -11.38701 -11.18220 -10.98716 -10.92421 -10.83379 -10.68736 -10.58619 -10.46879 -10.12815 -10.08765 -9.96230 -9.71275 -9.50645 -8.83604 -8.41810 -7.49404 -6.02664 -4.07092 3.17652 3.32873 3.37169 3.40403 3.78677 4.12194 4.41485 4.49919 4.61503 4.82161 4.86895 5.06921 5.10415 5.17872 5.30553 5.32327 5.37492 5.45406 5.48591 5.55717 5.59296 5.63746 5.65889 5.74341 5.83155 5.85908 5.99270 6.02134 6.10335 6.17809 6.22746 6.24648 6.30744 6.46695 6.51855 6.76349 7.08753 7.45375 7.56896 7.93921 8.25057 8.46466 8.92453 9.13752 9.57678 11.05189 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.004614 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.883684 B = 6066.934144 C = 6754.565216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.083 4.083 5 C -0.120 4.120 6 H 0.116 0.884 7 C -0.151 4.151 8 C -0.184 4.184 9 H 0.116 0.884 10 C 0.538 3.462 11 O -0.540 6.540 12 N -0.567 5.567 13 C 0.244 3.756 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.078 3.922 23 C -0.175 4.175 24 C -0.204 4.204 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.610 7.716 3.405 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.120 4.120 5 C -0.139 4.139 6 H 0.134 0.866 7 C -0.189 4.189 8 C -0.205 4.205 9 H 0.134 0.866 10 C 0.325 3.675 11 O -0.418 6.418 12 N -0.296 5.296 13 C 0.125 3.875 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.028 4.028 23 C -0.213 4.213 24 C -0.243 4.243 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.225 7.561 2.718 18.105 hybrid contribution 0.996 0.415 0.327 1.128 sum -15.228 7.977 3.045 17.459 Atomic orbital electron populations 1.21844 0.95524 1.01576 1.01491 1.21111 0.95185 0.96597 0.98498 1.21845 1.01758 0.95665 1.01107 1.21259 0.92569 1.00385 0.97800 1.22368 0.93714 1.02019 0.95790 0.86640 1.23046 1.02430 0.91788 1.01594 1.22417 0.99694 0.94602 1.03824 0.86563 1.19356 0.83365 0.79648 0.85129 1.90658 1.67874 1.63635 1.19655 1.47655 1.28570 1.47450 1.05965 1.19292 0.80146 0.90824 0.97189 1.21366 0.90922 0.98930 1.44788 0.92496 1.24928 0.98981 0.95112 0.95073 1.69926 1.24198 1.14095 1.45270 0.86573 0.81987 0.80442 0.78516 1.20217 1.21205 1.20231 1.21481 1.02315 0.95563 0.83417 1.23331 0.96516 1.03462 0.97969 1.23392 0.99002 0.97732 1.04181 0.92867 0.92875 0.92778 0.91003 0.92044 0.93205 0.92981 0.91846 0.91567 0.88425 0.88449 0.94791 0.93941 0.92692 0.86550 0.86396 0.88999 0.89058 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.10 -0.93 2.88 -90.62 -0.26 -1.19 16 3 C -0.15 -1.38 9.01 37.16 0.33 -1.04 16 4 C -0.08 -0.88 4.96 -26.73 -0.13 -1.01 16 5 C -0.12 -1.66 4.23 -90.62 -0.38 -2.04 16 6 H 0.12 1.86 7.60 -51.93 -0.39 1.47 16 7 C -0.15 -2.05 9.89 -26.69 -0.26 -2.32 16 8 C -0.18 -2.89 4.66 -91.73 -0.43 -3.32 16 9 H 0.12 1.56 7.21 -51.93 -0.37 1.19 16 10 C 0.54 11.65 7.46 -10.99 -0.08 11.56 16 11 O -0.54 -14.03 15.84 5.56 0.09 -13.95 16 12 N -0.57 -12.43 2.79 -167.47 -0.47 -12.90 16 13 C 0.24 6.47 4.46 -5.19 -0.02 6.45 16 14 C -0.52 -14.86 9.19 -34.44 -0.32 -15.18 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 18 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.08 1.35 5.80 -67.93 -0.39 0.96 16 23 C -0.18 -2.94 9.72 -26.73 -0.26 -3.20 16 24 C -0.20 -3.09 10.13 -26.73 -0.27 -3.36 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.60 7.88 -51.93 -0.41 0.20 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.10 1.05 8.03 -51.93 -0.42 0.64 16 36 H 0.03 0.91 6.33 -51.93 -0.33 0.58 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.12 1.68 6.85 -51.93 -0.36 1.33 16 40 H 0.12 2.40 6.29 -51.93 -0.33 2.08 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.56 8.12 -51.93 -0.42 1.13 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -32.06 350.46 -9.19 -41.25 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.57 Total: 2.18 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.23 Total: -12.90 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.27 Total: -38.88 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.06 -9.19 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387724654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.736 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds