Wall clock time and date at job start Mon Mar 30 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52995 * 109.47234 * 175.00265 * 4 2 1 6 6 H 1.09002 * 115.55083 * 330.58010 * 5 4 2 7 7 C 1.53003 * 117.50119 * 116.25023 * 5 4 2 8 8 C 1.53006 * 117.50178 * 184.91322 * 5 4 2 9 9 H 1.09003 * 117.49141 * 359.97438 * 8 5 4 10 10 C 1.50697 * 117.50120 * 144.99278 * 8 5 4 11 11 O 1.21280 * 119.99726 * 0.02562 * 10 8 5 12 12 N 1.34774 * 119.99686 * 180.02562 * 10 8 5 13 13 C 1.46504 * 119.99936 * 180.02562 * 12 10 8 14 14 C 1.50693 * 109.47151 * 89.99657 * 13 12 10 15 15 H 1.07996 * 120.00444 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99683 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00175 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47210 * 59.99925 * 18 16 14 20 20 H 1.48500 * 109.47338 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47162 * 299.99765 * 18 16 14 22 22 C 1.46502 * 120.00058 * 0.02562 * 12 10 8 23 23 C 1.53001 * 117.49574 * 188.62311 * 22 12 10 24 24 C 1.53001 * 117.49751 * 120.00081 * 22 12 10 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 32 32 H 1.09007 * 109.46744 * 294.99886 * 4 2 1 33 33 H 1.08995 * 109.46794 * 55.00131 * 4 2 1 34 34 H 1.09000 * 117.49887 * 214.97316 * 7 5 4 35 35 H 1.08997 * 117.49748 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.46840 * 210.00305 * 13 12 10 37 37 H 1.09007 * 109.46831 * 329.99711 * 13 12 10 38 38 H 0.96999 * 119.99798 * 180.02562 * 17 16 14 39 39 H 1.08992 * 115.55110 * 334.32589 * 22 12 10 40 40 H 1.09000 * 117.50252 * 0.02562 * 23 22 12 41 41 H 1.08998 * 117.50161 * 145.02519 * 23 22 12 42 42 H 1.09000 * 117.49787 * 214.97860 * 24 22 12 43 43 H 1.09003 * 117.49784 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.9926 -0.8819 0.1868 7 6 4.3696 -0.0989 2.2638 8 6 4.2610 -1.6255 2.2949 9 1 3.6326 -2.0696 3.0670 10 6 5.4856 -2.4184 1.9174 11 8 5.8842 -2.4100 0.7720 12 7 6.1378 -3.1369 2.8527 13 6 7.3287 -3.9074 2.4859 14 6 8.5547 -3.0473 2.6535 15 1 8.4568 -2.0289 2.9990 16 6 9.8016 -3.5607 2.3656 17 7 9.9209 -4.8012 1.9452 18 14 11.3214 -2.4949 2.5739 19 1 11.4307 -2.0599 3.9896 20 1 12.5284 -3.2754 2.2008 21 1 11.2134 -1.3018 1.6964 22 6 5.6560 -3.1475 4.2362 23 6 6.5454 -3.8120 5.2889 24 6 5.2553 -4.4975 4.8344 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 5.3271 0.3315 1.9704 35 1 3.8127 0.4606 3.0154 36 1 7.4079 -4.7827 3.1306 37 1 7.2486 -4.2275 1.4470 38 1 10.7981 -5.1625 1.7430 39 1 5.0830 -2.2719 4.5411 40 1 7.4893 -4.2410 4.9523 41 1 6.5577 -3.3736 6.2868 42 1 4.4188 -4.5100 5.5331 43 1 5.3498 -5.3778 4.1984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387724654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:47 Heat of formation + Delta-G solvation = -23.572563 kcal Electronic energy + Delta-G solvation = -20404.954374 eV Core-core repulsion = 17450.373084 eV Total energy + Delta-G solvation = -2954.581290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13415 -38.95982 -37.97454 -35.82878 -35.20372 -33.76022 -29.93150 -28.32467 -27.91717 -25.87148 -24.15285 -23.17941 -22.80307 -21.89454 -20.86908 -19.60120 -18.61346 -18.42376 -17.16699 -16.39056 -16.26379 -15.91726 -15.53437 -15.28843 -14.99782 -14.62594 -14.35442 -14.17908 -13.56684 -13.42161 -13.36067 -12.96955 -12.83013 -12.70675 -12.65060 -12.36231 -12.26763 -12.20676 -12.12625 -12.04696 -11.76245 -11.52144 -11.45742 -11.40813 -11.02722 -10.80306 -10.66656 -10.53042 -9.26428 -8.24089 -6.39163 1.33386 1.37963 1.45179 1.62236 2.18613 2.39124 2.89115 3.04391 3.12850 3.51856 3.78346 3.89743 3.93637 4.07818 4.10517 4.17746 4.23181 4.25426 4.34742 4.62238 4.74536 4.84909 4.85183 4.88902 4.89869 4.91079 5.01243 5.01758 5.05623 5.13543 5.14293 5.24333 5.24847 5.36184 5.40158 5.44859 5.53204 5.53985 5.59195 5.81619 6.03386 6.66986 6.78325 7.25613 7.45809 8.82498 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.004614 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.883684 B = 6066.934144 C = 6754.565216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.074 4.074 5 C -0.114 4.114 6 H 0.080 0.920 7 C -0.133 4.133 8 C -0.189 4.189 9 H 0.152 0.848 10 C 0.524 3.476 11 O -0.602 6.602 12 N -0.575 5.575 13 C 0.263 3.737 14 C -0.535 4.535 15 H 0.050 0.950 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.967 3.033 19 H -0.258 1.258 20 H -0.277 1.277 21 H -0.279 1.279 22 C 0.059 3.941 23 C -0.183 4.183 24 C -0.179 4.179 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.142 0.858 36 H 0.025 0.975 37 H -0.010 1.010 38 H 0.267 0.733 39 H 0.157 0.843 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.139 0.861 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.712 9.674 6.048 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.111 4.111 5 C -0.133 4.133 6 H 0.099 0.901 7 C -0.170 4.170 8 C -0.210 4.210 9 H 0.170 0.830 10 C 0.314 3.686 11 O -0.484 6.484 12 N -0.303 5.303 13 C 0.142 3.858 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.202 1.202 21 H -0.204 1.204 22 C -0.045 4.045 23 C -0.221 4.221 24 C -0.217 4.217 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.160 0.840 36 H 0.043 0.957 37 H 0.008 0.992 38 H 0.076 0.924 39 H 0.175 0.825 40 H 0.090 0.910 41 H 0.146 0.854 42 H 0.157 0.843 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.356 9.517 5.408 21.372 hybrid contribution 1.656 -0.245 -0.543 1.760 sum -16.700 9.272 4.865 19.711 Atomic orbital electron populations 1.21802 0.93874 1.01965 1.02356 1.21113 0.96508 0.96527 0.97470 1.21832 1.00633 0.95629 1.02137 1.21261 0.89541 1.01149 0.99160 1.22383 0.95915 1.01116 0.93904 0.90144 1.23170 1.01731 0.90065 1.02052 1.22356 0.97499 0.95181 1.05962 0.83032 1.20494 0.84676 0.79283 0.84174 1.90616 1.69945 1.65648 1.22234 1.47664 1.27308 1.46788 1.08560 1.18685 0.82139 0.91114 0.93879 1.21571 0.92075 0.98733 1.44988 0.93128 1.25858 1.02352 0.96454 0.94451 1.70052 1.25157 1.15814 1.45892 0.85485 0.77898 0.78309 0.79246 1.18270 1.20220 1.20443 1.22012 1.03388 0.98397 0.80665 1.23296 0.95224 1.04169 0.99379 1.23441 0.99394 0.95388 1.03486 0.91589 0.92450 0.92654 0.92908 0.93768 0.92694 0.91487 0.89276 0.91262 0.90889 0.84048 0.95687 0.99228 0.92399 0.82541 0.90965 0.85408 0.84288 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 71.98 0.66 -1.30 16 2 C -0.10 -1.74 2.88 -10.79 -0.03 -1.77 16 3 C -0.15 -2.46 9.01 71.98 0.65 -1.82 16 4 C -0.07 -1.37 4.96 30.59 0.15 -1.21 16 5 C -0.11 -3.05 4.23 -10.79 -0.05 -3.10 16 6 H 0.08 2.74 7.60 -2.39 -0.02 2.72 16 7 C -0.13 -3.31 9.89 30.62 0.30 -3.00 16 8 C -0.19 -5.64 4.66 -11.51 -0.05 -5.69 16 9 H 0.15 3.44 7.21 -2.39 -0.02 3.42 16 10 C 0.52 23.43 7.46 87.66 0.65 24.08 16 11 O -0.60 -33.55 15.84 -3.03 -0.05 -33.60 16 12 N -0.58 -25.94 2.79 -802.15 -2.24 -28.18 16 13 C 0.26 14.85 4.46 85.63 0.38 15.23 16 14 C -0.54 -31.84 9.19 25.60 0.24 -31.61 16 15 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 16 C 0.01 0.45 5.46 84.66 0.46 0.91 16 17 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 18 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 C 0.06 1.94 5.80 44.99 0.26 2.20 16 23 C -0.18 -5.90 9.72 30.60 0.30 -5.61 16 24 C -0.18 -4.98 10.13 30.60 0.31 -4.67 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.89 7.38 -2.38 -0.02 0.87 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.24 7.88 -2.38 -0.02 1.22 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.14 2.32 8.03 -2.39 -0.02 2.30 16 36 H 0.03 1.44 6.33 -2.39 -0.02 1.42 16 37 H -0.01 -0.68 7.42 -2.38 -0.02 -0.70 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.16 3.84 6.85 -2.39 -0.02 3.83 16 40 H 0.07 3.04 6.29 -2.39 -0.02 3.02 16 41 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 Total: -1.00 -76.67 350.46 5.22 -71.45 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.96 Total: 17.03 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.24 Total: -17.36 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.96 Total: -85.53 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.05 Total: -33.60 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.67 5.22 -71.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387724654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.878 kcal (2) G-P(sol) polarization free energy of solvation -76.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds