Wall clock time and date at job start Mon Mar 30 2020 06:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46678 * 2 1 4 4 C 1.52996 * 109.47251 * 120.00151 * 2 1 3 5 5 C 1.53003 * 109.47385 * 65.00029 * 4 2 1 6 6 H 1.09005 * 115.55683 * 29.30644 * 5 4 2 7 7 C 1.52993 * 117.49865 * 243.62538 * 5 4 2 8 8 C 1.52990 * 117.50066 * 174.99885 * 5 4 2 9 9 H 1.09001 * 117.51843 * 0.02562 * 8 5 4 10 10 C 1.50702 * 117.49798 * 214.97825 * 8 5 4 11 11 O 1.21283 * 120.00262 * 359.97438 * 10 8 5 12 12 N 1.34777 * 119.99928 * 179.70944 * 10 8 5 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.50697 * 109.46949 * 90.00203 * 13 12 10 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00096 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47135 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47061 * 119.99902 * 18 16 14 21 21 H 1.48503 * 109.47075 * 240.00004 * 18 16 14 22 22 C 1.46506 * 120.00264 * 0.28128 * 12 10 8 23 23 C 1.52996 * 117.50021 * 188.74517 * 22 12 10 24 24 C 1.52995 * 117.50147 * 120.08438 * 22 12 10 25 25 H 1.08991 * 109.47286 * 59.99763 * 1 2 3 26 26 H 1.08998 * 109.46656 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46751 * 299.99668 * 1 2 3 28 28 H 1.08996 * 109.46751 * 240.00331 * 2 1 3 29 29 H 1.09000 * 109.46448 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47150 * 299.99880 * 3 2 1 31 31 H 1.08996 * 109.47259 * 60.00642 * 3 2 1 32 32 H 1.09000 * 109.47023 * 304.99923 * 4 2 1 33 33 H 1.08995 * 109.47051 * 185.00165 * 4 2 1 34 34 H 1.09007 * 117.49794 * 145.02254 * 7 5 4 35 35 H 1.08997 * 117.50262 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.47567 * 210.00057 * 13 12 10 37 37 H 1.09005 * 109.47076 * 330.00563 * 13 12 10 38 38 H 0.96991 * 119.99957 * 180.02562 * 17 16 14 39 39 H 1.08995 * 115.54395 * 334.41550 * 22 12 10 40 40 H 1.08997 * 117.50027 * 359.97438 * 23 22 12 41 41 H 1.08999 * 117.49868 * 145.01649 * 23 22 12 42 42 H 1.09001 * 117.49938 * 214.98555 * 24 22 12 43 43 H 1.09000 * 117.50055 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6354 -2.1955 1.1879 6 1 1.5389 -2.6155 0.1867 7 6 0.6792 -2.7109 2.2653 8 6 2.1540 -3.1170 2.2936 9 1 2.7833 -2.6733 3.0651 10 6 2.4924 -4.5359 1.9151 11 8 2.3495 -4.9086 0.7698 12 7 2.9590 -5.3893 2.8481 13 6 3.2936 -6.7669 2.4790 14 6 4.7383 -6.8367 2.0557 15 1 5.3464 -5.9442 2.0615 16 6 5.2837 -8.0399 1.6610 17 7 4.5430 -9.1267 1.6534 18 14 7.0746 -8.1266 1.1370 19 1 7.6845 -6.7760 1.2336 20 1 7.8055 -9.0651 2.0258 21 1 7.1573 -8.6073 -0.2657 22 6 3.1313 -4.9393 4.2317 23 6 3.8526 -5.8824 5.1966 24 6 2.3410 -5.6731 5.3169 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1264 -0.6443 1.2951 34 1 -0.0463 -3.4701 1.9729 35 1 0.3387 -1.9999 3.0180 36 1 3.1341 -7.4217 3.3357 37 1 2.6574 -7.0867 1.6537 38 1 4.9268 -9.9732 1.3761 39 1 3.2898 -3.8688 4.3614 40 1 4.1985 -6.8378 4.8023 41 1 4.4854 -5.4323 5.9616 42 1 1.9799 -5.0854 6.1609 43 1 1.6925 -6.4905 5.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387724659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:50 Heat of formation + Delta-G solvation = -4.720554 kcal Electronic energy + Delta-G solvation = -20401.717385 eV Core-core repulsion = 17447.953580 eV Total energy + Delta-G solvation = -2953.763805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59754 -37.74021 -36.53927 -34.80051 -33.17309 -31.90467 -28.14260 -27.22812 -27.14977 -24.10611 -22.46706 -21.93563 -21.41676 -20.77507 -20.00757 -17.98884 -17.07330 -16.37107 -15.46187 -15.14400 -14.77054 -14.51043 -14.20837 -13.99799 -13.61506 -13.54388 -13.06505 -12.62042 -12.35183 -12.25170 -11.94397 -11.58422 -11.48857 -11.41065 -11.14167 -10.98706 -10.91821 -10.82867 -10.67732 -10.56173 -10.49413 -10.15534 -10.09565 -9.93242 -9.70837 -9.47711 -8.83585 -8.42504 -7.49424 -6.02940 -4.07159 3.18061 3.30592 3.38384 3.42971 3.80060 4.10307 4.40325 4.50669 4.61693 4.82231 4.87304 5.06090 5.06839 5.18805 5.28786 5.31343 5.37947 5.46925 5.48713 5.52691 5.58670 5.64624 5.67218 5.74634 5.83083 5.85041 5.99630 6.03129 6.11516 6.17685 6.19871 6.24446 6.30838 6.46708 6.51790 6.76419 7.08327 7.44987 7.56776 7.93934 8.24839 8.46025 8.92886 9.13632 9.57795 11.04979 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.004745 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.669784 B = 5899.398969 C = 6638.428023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.083 4.083 5 C -0.120 4.120 6 H 0.116 0.884 7 C -0.150 4.150 8 C -0.183 4.183 9 H 0.116 0.884 10 C 0.538 3.462 11 O -0.541 6.541 12 N -0.567 5.567 13 C 0.244 3.756 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.079 3.921 23 C -0.177 4.177 24 C -0.202 4.202 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 16.794 4.507 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.121 4.121 5 C -0.139 4.139 6 H 0.134 0.866 7 C -0.188 4.188 8 C -0.204 4.204 9 H 0.134 0.866 10 C 0.325 3.675 11 O -0.418 6.418 12 N -0.296 5.296 13 C 0.125 3.875 14 C -0.558 4.558 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.027 4.027 23 C -0.214 4.214 24 C -0.241 4.241 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.659 16.366 3.837 18.081 hybrid contribution 1.124 -0.263 -0.089 1.158 sum -5.535 16.103 3.748 17.436 Atomic orbital electron populations 1.21840 0.95217 1.02162 1.01095 1.21111 0.96021 0.95743 0.98528 1.21844 1.00964 0.96177 1.01466 1.21260 1.00766 0.92258 0.97780 1.22372 1.01973 0.93758 0.95792 0.86625 1.23006 0.91165 1.02990 1.01615 1.22401 0.99068 0.95113 1.03793 0.86634 1.19346 0.77555 0.85549 0.85057 1.90660 1.54120 1.77822 1.19243 1.47664 1.61857 1.14029 1.06025 1.19305 0.96369 0.75320 0.96532 1.21445 0.95588 0.94481 1.44327 0.92377 1.24930 0.98181 0.95530 0.95493 1.69944 1.35997 0.99413 1.48144 0.86457 0.84740 0.77998 0.78339 1.19792 1.20981 1.20919 1.21487 1.04643 0.96100 0.80509 1.23355 0.93902 1.03173 1.00991 1.23377 0.95314 1.04213 1.01161 0.93210 0.92096 0.92995 0.90974 0.92745 0.92874 0.92877 0.91851 0.91512 0.88643 0.88461 0.94769 0.93940 0.92811 0.86659 0.86396 0.88998 0.89068 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.01 37.16 0.33 -1.02 16 2 C -0.10 -0.95 2.88 -90.62 -0.26 -1.21 16 3 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 4 C -0.08 -0.91 4.96 -26.73 -0.13 -1.04 16 5 C -0.12 -1.66 4.24 -90.63 -0.38 -2.05 16 6 H 0.12 1.86 7.60 -51.93 -0.39 1.47 16 7 C -0.15 -1.94 9.88 -26.74 -0.26 -2.21 16 8 C -0.18 -2.87 5.02 -91.78 -0.46 -3.33 16 9 H 0.12 1.58 6.54 -51.93 -0.34 1.24 16 10 C 0.54 11.64 7.46 -10.98 -0.08 11.56 16 11 O -0.54 -14.02 15.84 5.55 0.09 -13.94 16 12 N -0.57 -12.41 2.79 -167.47 -0.47 -12.88 16 13 C 0.24 6.45 4.46 -5.20 -0.02 6.42 16 14 C -0.52 -14.83 9.18 -34.44 -0.32 -15.15 16 15 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 18 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 22 C 0.08 1.35 6.03 -67.93 -0.41 0.94 16 23 C -0.18 -2.95 9.72 -26.70 -0.26 -3.21 16 24 C -0.20 -3.05 10.13 -26.70 -0.27 -3.32 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.62 7.38 -51.93 -0.38 0.23 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.33 8.14 -51.92 -0.42 0.91 16 35 H 0.10 1.00 8.03 -51.93 -0.42 0.59 16 36 H 0.03 0.91 6.33 -51.93 -0.33 0.58 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 1.65 6.28 -51.93 -0.33 1.33 16 40 H 0.12 2.40 6.29 -51.93 -0.33 2.07 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -32.17 349.80 -9.18 -41.35 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.50 Total: 1.99 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.28 Total: -12.87 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.27 Total: -38.85 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.17 -9.18 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387724659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.627 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds