Wall clock time and date at job start Mon Mar 30 2020 06:41:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53001 * 109.46678 * 2 1
4 4 C 1.52996 * 109.47251 * 120.00151 * 2 1 3
5 5 C 1.53003 * 109.47385 * 65.00029 * 4 2 1
6 6 H 1.09005 * 115.55683 * 29.30644 * 5 4 2
7 7 C 1.52993 * 117.49865 * 243.62538 * 5 4 2
8 8 C 1.52990 * 117.50066 * 174.99885 * 5 4 2
9 9 H 1.09001 * 117.51843 * 0.02562 * 8 5 4
10 10 C 1.50702 * 117.49798 * 214.97825 * 8 5 4
11 11 O 1.21283 * 120.00262 * 359.97438 * 10 8 5
12 12 N 1.34777 * 119.99928 * 179.70944 * 10 8 5
13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8
14 14 C 1.50697 * 109.46949 * 90.00203 * 13 12 10
15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 12
16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 12
17 17 N 1.31519 * 120.00096 * 0.02562 * 16 14 13
18 18 Si 1.86802 * 120.00103 * 180.02562 * 16 14 13
19 19 H 1.48503 * 109.47135 * 359.97438 * 18 16 14
20 20 H 1.48493 * 109.47061 * 119.99902 * 18 16 14
21 21 H 1.48503 * 109.47075 * 240.00004 * 18 16 14
22 22 C 1.46506 * 120.00264 * 0.28128 * 12 10 8
23 23 C 1.52996 * 117.50021 * 188.74517 * 22 12 10
24 24 C 1.52995 * 117.50147 * 120.08438 * 22 12 10
25 25 H 1.08991 * 109.47286 * 59.99763 * 1 2 3
26 26 H 1.08998 * 109.46656 * 180.02562 * 1 2 3
27 27 H 1.08996 * 109.46751 * 299.99668 * 1 2 3
28 28 H 1.08996 * 109.46751 * 240.00331 * 2 1 3
29 29 H 1.09000 * 109.46448 * 180.02562 * 3 2 1
30 30 H 1.08998 * 109.47150 * 299.99880 * 3 2 1
31 31 H 1.08996 * 109.47259 * 60.00642 * 3 2 1
32 32 H 1.09000 * 109.47023 * 304.99923 * 4 2 1
33 33 H 1.08995 * 109.47051 * 185.00165 * 4 2 1
34 34 H 1.09007 * 117.49794 * 145.02254 * 7 5 4
35 35 H 1.08997 * 117.50262 * 359.97438 * 7 5 4
36 36 H 1.09001 * 109.47567 * 210.00057 * 13 12 10
37 37 H 1.09005 * 109.47076 * 330.00563 * 13 12 10
38 38 H 0.96991 * 119.99957 * 180.02562 * 17 16 14
39 39 H 1.08995 * 115.54395 * 334.41550 * 22 12 10
40 40 H 1.08997 * 117.50027 * 359.97438 * 23 22 12
41 41 H 1.08999 * 117.49868 * 145.01649 * 23 22 12
42 42 H 1.09001 * 117.49938 * 214.98555 * 24 22 12
43 43 H 1.09000 * 117.50055 * 359.97438 * 24 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 1.6354 -2.1955 1.1879
6 1 1.5389 -2.6155 0.1867
7 6 0.6792 -2.7109 2.2653
8 6 2.1540 -3.1170 2.2936
9 1 2.7833 -2.6733 3.0651
10 6 2.4924 -4.5359 1.9151
11 8 2.3495 -4.9086 0.7698
12 7 2.9590 -5.3893 2.8481
13 6 3.2936 -6.7669 2.4790
14 6 4.7383 -6.8367 2.0557
15 1 5.3464 -5.9442 2.0615
16 6 5.2837 -8.0399 1.6610
17 7 4.5430 -9.1267 1.6534
18 14 7.0746 -8.1266 1.1370
19 1 7.6845 -6.7760 1.2336
20 1 7.8055 -9.0651 2.0258
21 1 7.1573 -8.6073 -0.2657
22 6 3.1313 -4.9393 4.2317
23 6 3.8526 -5.8824 5.1966
24 6 2.3410 -5.6731 5.3169
25 1 -0.3633 0.5138 -0.8899
26 1 -0.3632 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 3.1300 1.4425 -0.0005
30 1 1.6766 1.9563 -0.8900
31 1 1.6767 1.9563 0.8900
32 1 1.6055 -0.2618 2.1369
33 1 3.1264 -0.6443 1.2951
34 1 -0.0463 -3.4701 1.9729
35 1 0.3387 -1.9999 3.0180
36 1 3.1341 -7.4217 3.3357
37 1 2.6574 -7.0867 1.6537
38 1 4.9268 -9.9732 1.3761
39 1 3.2898 -3.8688 4.3614
40 1 4.1985 -6.8378 4.8023
41 1 4.4854 -5.4323 5.9616
42 1 1.9799 -5.0854 6.1609
43 1 1.6925 -6.4905 5.0015
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000387724659.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:41:49
Heat of formation + Delta-G solvation = -22.844706 kcal
Electronic energy + Delta-G solvation = -20402.503307 eV
Core-core repulsion = 17447.953580 eV
Total energy + Delta-G solvation = -2954.549727 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.13479 -38.95958 -37.97012 -35.83280 -35.20146 -33.75877 -29.93489 -28.32251
-27.91728 -25.90624 -24.10080 -23.23048 -22.80073 -21.89044 -20.87621 -19.54447
-18.69291 -18.43206 -17.16589 -16.38647 -16.10700 -15.94574 -15.79434 -15.15279
-14.96959 -14.63777 -14.40926 -14.06003 -13.69846 -13.42170 -13.30203 -12.98150
-12.87103 -12.70885 -12.61820 -12.35025 -12.26797 -12.20978 -12.10377 -12.05507
-11.76410 -11.48601 -11.47190 -11.41101 -11.01686 -10.79416 -10.67101 -10.52515
-9.26223 -8.24384 -6.39250 1.33085 1.35670 1.47552 1.63532 2.19864
2.38528 2.88885 3.04174 3.13521 3.52275 3.77711 3.86460 3.95414
4.05425 4.10831 4.18237 4.20848 4.26008 4.36237 4.62458 4.76805
4.84722 4.85668 4.88111 4.90548 4.90974 4.99592 5.01865 5.06141
5.13330 5.14228 5.24366 5.25189 5.36325 5.40543 5.44714 5.53177
5.54020 5.58911 5.81442 6.03261 6.67314 6.78383 7.25710 7.45915
8.82533
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.019774 B = 0.004745 C = 0.004217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1415.669784 B = 5899.398969 C = 6638.428023
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.098 4.098
3 C -0.143 4.143
4 C -0.075 4.075
5 C -0.118 4.118
6 H 0.080 0.920
7 C -0.125 4.125
8 C -0.191 4.191
9 H 0.148 0.852
10 C 0.524 3.476
11 O -0.602 6.602
12 N -0.575 5.575
13 C 0.262 3.738
14 C -0.533 4.533
15 H 0.050 0.950
16 C 0.008 3.992
17 N -0.929 5.929
18 Si 0.967 3.033
19 H -0.267 1.267
20 H -0.267 1.267
21 H -0.282 1.282
22 C 0.059 3.941
23 C -0.184 4.184
24 C -0.177 4.177
25 H 0.054 0.946
26 H 0.045 0.955
27 H 0.067 0.933
28 H 0.051 0.949
29 H 0.052 0.948
30 H 0.057 0.943
31 H 0.066 0.934
32 H 0.090 0.910
33 H 0.064 0.936
34 H 0.078 0.922
35 H 0.141 0.859
36 H 0.025 0.975
37 H -0.010 1.010
38 H 0.267 0.733
39 H 0.157 0.843
40 H 0.072 0.928
41 H 0.128 0.872
42 H 0.138 0.862
43 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.213 19.859 6.743 21.874
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.116 4.116
3 C -0.200 4.200
4 C -0.112 4.112
5 C -0.137 4.137
6 H 0.099 0.901
7 C -0.162 4.162
8 C -0.212 4.212
9 H 0.165 0.835
10 C 0.314 3.686
11 O -0.484 6.484
12 N -0.303 5.303
13 C 0.141 3.859
14 C -0.572 4.572
15 H 0.068 0.932
16 C -0.191 4.191
17 N -0.569 5.569
18 Si 0.791 3.209
19 H -0.192 1.192
20 H -0.192 1.192
21 H -0.208 1.208
22 C -0.044 4.044
23 C -0.222 4.222
24 C -0.215 4.215
25 H 0.073 0.927
26 H 0.064 0.936
27 H 0.086 0.914
28 H 0.070 0.930
29 H 0.071 0.929
30 H 0.076 0.924
31 H 0.085 0.915
32 H 0.108 0.892
33 H 0.083 0.917
34 H 0.096 0.904
35 H 0.159 0.841
36 H 0.043 0.957
37 H 0.008 0.992
38 H 0.076 0.924
39 H 0.174 0.826
40 H 0.091 0.909
41 H 0.146 0.854
42 H 0.156 0.844
43 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -6.276 19.453 6.122 21.337
hybrid contribution 0.939 -1.273 -0.804 1.775
sum -5.337 18.179 5.318 19.679
Atomic orbital electron populations
1.21821 0.94610 1.01510 1.02166 1.21112 0.96564 0.96570 0.97388
1.21806 1.00881 0.94959 1.02400 1.21258 1.00823 0.89897 0.99231
1.22389 1.02137 0.95155 0.94027 0.90122 1.23145 0.88935 1.02524
1.01592 1.22331 1.01820 0.91155 1.05870 0.83478 1.20481 0.76223
0.87801 0.84110 1.90617 1.56560 1.79433 1.21838 1.47674 1.61671
1.12311 1.08623 1.18695 0.94586 0.78369 0.94213 1.21627 0.96369
0.94397 1.44774 0.93174 1.25851 1.02970 0.95052 0.95243 1.70061
1.38103 1.00047 1.48716 0.85374 0.79078 0.78441 0.77973 1.19168
1.19197 1.20774 1.22022 1.06289 0.98168 0.77967 1.23321 0.95824
1.01282 1.01763 1.23420 0.93760 1.03167 1.01147 0.92698 0.93575
0.91412 0.93047 0.92878 0.92393 0.91513 0.89167 0.91704 0.90364
0.84075 0.95665 0.99186 0.92413 0.82623 0.90946 0.85387 0.84361
0.91191
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.39 9.01 71.98 0.65 -1.74 16
2 C -0.10 -1.78 2.88 -10.79 -0.03 -1.82 16
3 C -0.14 -2.06 9.19 71.98 0.66 -1.40 16
4 C -0.07 -1.43 4.96 30.59 0.15 -1.28 16
5 C -0.12 -3.15 4.24 -10.80 -0.05 -3.20 16
6 H 0.08 2.74 7.60 -2.38 -0.02 2.73 16
7 C -0.12 -2.93 9.88 30.59 0.30 -2.62 16
8 C -0.19 -5.70 5.02 -11.54 -0.06 -5.76 16
9 H 0.15 3.43 6.54 -2.39 -0.02 3.42 16
10 C 0.52 23.42 7.46 87.66 0.65 24.07 16
11 O -0.60 -33.49 15.84 -3.04 -0.05 -33.54 16
12 N -0.57 -25.93 2.79 -802.15 -2.24 -28.17 16
13 C 0.26 14.81 4.46 85.63 0.38 15.19 16
14 C -0.53 -31.76 9.18 25.60 0.24 -31.52 16
15 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16
16 C 0.01 0.45 5.46 84.66 0.46 0.91 16
17 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16
18 Si 0.97 46.12 29.54 68.60 2.03 48.15 16
19 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16
20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16
21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16
22 C 0.06 1.94 6.03 44.99 0.27 2.21 16
23 C -0.18 -5.94 9.72 30.62 0.30 -5.64 16
24 C -0.18 -4.94 10.13 30.62 0.31 -4.63 16
25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
26 H 0.05 0.89 7.38 -2.39 -0.02 0.87 16
27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16
29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
32 H 0.09 1.28 7.88 -2.39 -0.02 1.26 16
33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
34 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16
35 H 0.14 2.14 8.03 -2.39 -0.02 2.12 16
36 H 0.03 1.45 6.33 -2.39 -0.02 1.43 16
37 H -0.01 -0.66 7.42 -2.38 -0.02 -0.67 16
38 H 0.27 15.43 8.31 -92.72 -0.77 14.66 16
39 H 0.16 3.80 6.28 -2.39 -0.02 3.78 16
40 H 0.07 3.04 6.29 -2.39 -0.02 3.02 16
41 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16
42 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16
43 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16
Total: -1.00 -76.72 349.80 5.22 -71.50
By element:
Atomic # 1 Polarization: 15.60 SS G_CDS: 0.96 Total: 16.56 kcal
Atomic # 6 Polarization: -21.46 SS G_CDS: 4.24 Total: -17.22 kcal
Atomic # 7 Polarization: -83.49 SS G_CDS: -1.96 Total: -85.45 kcal
Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal
Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal
Total: -76.72 5.22 -71.50 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000387724659.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.651 kcal
(2) G-P(sol) polarization free energy of solvation -76.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds