Wall clock time and date at job start Mon Mar 30 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46678 * 2 1 4 4 C 1.52996 * 109.47251 * 120.00151 * 2 1 3 5 5 C 1.53003 * 109.47385 * 65.00029 * 4 2 1 6 6 H 1.09005 * 115.55683 * 29.30644 * 5 4 2 7 7 C 1.52993 * 117.49865 * 243.62538 * 5 4 2 8 8 C 1.52990 * 117.50066 * 174.99885 * 5 4 2 9 9 H 1.09001 * 117.51843 * 0.02562 * 8 5 4 10 10 C 1.50702 * 117.49798 * 214.97825 * 8 5 4 11 11 O 1.21283 * 120.00262 * 359.97438 * 10 8 5 12 12 N 1.34777 * 119.99928 * 179.70944 * 10 8 5 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.50697 * 109.46949 * 90.00203 * 13 12 10 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00096 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47135 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47061 * 119.99902 * 18 16 14 21 21 H 1.48503 * 109.47075 * 240.00004 * 18 16 14 22 22 C 1.46506 * 120.00264 * 0.28128 * 12 10 8 23 23 C 1.52996 * 117.50021 * 188.74517 * 22 12 10 24 24 C 1.52995 * 117.50147 * 120.08438 * 22 12 10 25 25 H 1.08991 * 109.47286 * 59.99763 * 1 2 3 26 26 H 1.08998 * 109.46656 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46751 * 299.99668 * 1 2 3 28 28 H 1.08996 * 109.46751 * 240.00331 * 2 1 3 29 29 H 1.09000 * 109.46448 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47150 * 299.99880 * 3 2 1 31 31 H 1.08996 * 109.47259 * 60.00642 * 3 2 1 32 32 H 1.09000 * 109.47023 * 304.99923 * 4 2 1 33 33 H 1.08995 * 109.47051 * 185.00165 * 4 2 1 34 34 H 1.09007 * 117.49794 * 145.02254 * 7 5 4 35 35 H 1.08997 * 117.50262 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.47567 * 210.00057 * 13 12 10 37 37 H 1.09005 * 109.47076 * 330.00563 * 13 12 10 38 38 H 0.96991 * 119.99957 * 180.02562 * 17 16 14 39 39 H 1.08995 * 115.54395 * 334.41550 * 22 12 10 40 40 H 1.08997 * 117.50027 * 359.97438 * 23 22 12 41 41 H 1.08999 * 117.49868 * 145.01649 * 23 22 12 42 42 H 1.09001 * 117.49938 * 214.98555 * 24 22 12 43 43 H 1.09000 * 117.50055 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6354 -2.1955 1.1879 6 1 1.5389 -2.6155 0.1867 7 6 0.6792 -2.7109 2.2653 8 6 2.1540 -3.1170 2.2936 9 1 2.7833 -2.6733 3.0651 10 6 2.4924 -4.5359 1.9151 11 8 2.3495 -4.9086 0.7698 12 7 2.9590 -5.3893 2.8481 13 6 3.2936 -6.7669 2.4790 14 6 4.7383 -6.8367 2.0557 15 1 5.3464 -5.9442 2.0615 16 6 5.2837 -8.0399 1.6610 17 7 4.5430 -9.1267 1.6534 18 14 7.0746 -8.1266 1.1370 19 1 7.6845 -6.7760 1.2336 20 1 7.8055 -9.0651 2.0258 21 1 7.1573 -8.6073 -0.2657 22 6 3.1313 -4.9393 4.2317 23 6 3.8526 -5.8824 5.1966 24 6 2.3410 -5.6731 5.3169 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1264 -0.6443 1.2951 34 1 -0.0463 -3.4701 1.9729 35 1 0.3387 -1.9999 3.0180 36 1 3.1341 -7.4217 3.3357 37 1 2.6574 -7.0867 1.6537 38 1 4.9268 -9.9732 1.3761 39 1 3.2898 -3.8688 4.3614 40 1 4.1985 -6.8378 4.8023 41 1 4.4854 -5.4323 5.9616 42 1 1.9799 -5.0854 6.1609 43 1 1.6925 -6.4905 5.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387724659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:49 Heat of formation + Delta-G solvation = -22.844706 kcal Electronic energy + Delta-G solvation = -20402.503307 eV Core-core repulsion = 17447.953580 eV Total energy + Delta-G solvation = -2954.549727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13479 -38.95958 -37.97012 -35.83280 -35.20146 -33.75877 -29.93489 -28.32251 -27.91728 -25.90624 -24.10080 -23.23048 -22.80073 -21.89044 -20.87621 -19.54447 -18.69291 -18.43206 -17.16589 -16.38647 -16.10700 -15.94574 -15.79434 -15.15279 -14.96959 -14.63777 -14.40926 -14.06003 -13.69846 -13.42170 -13.30203 -12.98150 -12.87103 -12.70885 -12.61820 -12.35025 -12.26797 -12.20978 -12.10377 -12.05507 -11.76410 -11.48601 -11.47190 -11.41101 -11.01686 -10.79416 -10.67101 -10.52515 -9.26223 -8.24384 -6.39250 1.33085 1.35670 1.47552 1.63532 2.19864 2.38528 2.88885 3.04174 3.13521 3.52275 3.77711 3.86460 3.95414 4.05425 4.10831 4.18237 4.20848 4.26008 4.36237 4.62458 4.76805 4.84722 4.85668 4.88111 4.90548 4.90974 4.99592 5.01865 5.06141 5.13330 5.14228 5.24366 5.25189 5.36325 5.40543 5.44714 5.53177 5.54020 5.58911 5.81442 6.03261 6.67314 6.78383 7.25710 7.45915 8.82533 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.004745 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.669784 B = 5899.398969 C = 6638.428023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.075 4.075 5 C -0.118 4.118 6 H 0.080 0.920 7 C -0.125 4.125 8 C -0.191 4.191 9 H 0.148 0.852 10 C 0.524 3.476 11 O -0.602 6.602 12 N -0.575 5.575 13 C 0.262 3.738 14 C -0.533 4.533 15 H 0.050 0.950 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.267 1.267 21 H -0.282 1.282 22 C 0.059 3.941 23 C -0.184 4.184 24 C -0.177 4.177 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.025 0.975 37 H -0.010 1.010 38 H 0.267 0.733 39 H 0.157 0.843 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 19.859 6.743 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.200 4.200 4 C -0.112 4.112 5 C -0.137 4.137 6 H 0.099 0.901 7 C -0.162 4.162 8 C -0.212 4.212 9 H 0.165 0.835 10 C 0.314 3.686 11 O -0.484 6.484 12 N -0.303 5.303 13 C 0.141 3.859 14 C -0.572 4.572 15 H 0.068 0.932 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.192 1.192 21 H -0.208 1.208 22 C -0.044 4.044 23 C -0.222 4.222 24 C -0.215 4.215 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.043 0.957 37 H 0.008 0.992 38 H 0.076 0.924 39 H 0.174 0.826 40 H 0.091 0.909 41 H 0.146 0.854 42 H 0.156 0.844 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.276 19.453 6.122 21.337 hybrid contribution 0.939 -1.273 -0.804 1.775 sum -5.337 18.179 5.318 19.679 Atomic orbital electron populations 1.21821 0.94610 1.01510 1.02166 1.21112 0.96564 0.96570 0.97388 1.21806 1.00881 0.94959 1.02400 1.21258 1.00823 0.89897 0.99231 1.22389 1.02137 0.95155 0.94027 0.90122 1.23145 0.88935 1.02524 1.01592 1.22331 1.01820 0.91155 1.05870 0.83478 1.20481 0.76223 0.87801 0.84110 1.90617 1.56560 1.79433 1.21838 1.47674 1.61671 1.12311 1.08623 1.18695 0.94586 0.78369 0.94213 1.21627 0.96369 0.94397 1.44774 0.93174 1.25851 1.02970 0.95052 0.95243 1.70061 1.38103 1.00047 1.48716 0.85374 0.79078 0.78441 0.77973 1.19168 1.19197 1.20774 1.22022 1.06289 0.98168 0.77967 1.23321 0.95824 1.01282 1.01763 1.23420 0.93760 1.03167 1.01147 0.92698 0.93575 0.91412 0.93047 0.92878 0.92393 0.91513 0.89167 0.91704 0.90364 0.84075 0.95665 0.99186 0.92413 0.82623 0.90946 0.85387 0.84361 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.01 71.98 0.65 -1.74 16 2 C -0.10 -1.78 2.88 -10.79 -0.03 -1.82 16 3 C -0.14 -2.06 9.19 71.98 0.66 -1.40 16 4 C -0.07 -1.43 4.96 30.59 0.15 -1.28 16 5 C -0.12 -3.15 4.24 -10.80 -0.05 -3.20 16 6 H 0.08 2.74 7.60 -2.38 -0.02 2.73 16 7 C -0.12 -2.93 9.88 30.59 0.30 -2.62 16 8 C -0.19 -5.70 5.02 -11.54 -0.06 -5.76 16 9 H 0.15 3.43 6.54 -2.39 -0.02 3.42 16 10 C 0.52 23.42 7.46 87.66 0.65 24.07 16 11 O -0.60 -33.49 15.84 -3.04 -0.05 -33.54 16 12 N -0.57 -25.93 2.79 -802.15 -2.24 -28.17 16 13 C 0.26 14.81 4.46 85.63 0.38 15.19 16 14 C -0.53 -31.76 9.18 25.60 0.24 -31.52 16 15 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 16 C 0.01 0.45 5.46 84.66 0.46 0.91 16 17 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 18 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 C 0.06 1.94 6.03 44.99 0.27 2.21 16 23 C -0.18 -5.94 9.72 30.62 0.30 -5.64 16 24 C -0.18 -4.94 10.13 30.62 0.31 -4.63 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.89 7.38 -2.39 -0.02 0.87 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 1.28 7.88 -2.39 -0.02 1.26 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.14 2.14 8.03 -2.39 -0.02 2.12 16 36 H 0.03 1.45 6.33 -2.39 -0.02 1.43 16 37 H -0.01 -0.66 7.42 -2.38 -0.02 -0.67 16 38 H 0.27 15.43 8.31 -92.72 -0.77 14.66 16 39 H 0.16 3.80 6.28 -2.39 -0.02 3.78 16 40 H 0.07 3.04 6.29 -2.39 -0.02 3.02 16 41 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 Total: -1.00 -76.72 349.80 5.22 -71.50 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.96 Total: 16.56 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.24 Total: -17.22 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.96 Total: -85.45 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -76.72 5.22 -71.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387724659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.651 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds