Wall clock time and date at job start Mon Mar 30 2020 06:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 C 1.52998 * 109.47379 * 120.00064 * 2 1 3 5 5 C 1.53006 * 109.47210 * 65.00074 * 4 2 1 6 6 H 1.09002 * 115.56020 * 29.30642 * 5 4 2 7 7 C 1.52997 * 117.49537 * 243.62514 * 5 4 2 8 8 C 1.53000 * 117.49776 * 175.00059 * 5 4 2 9 9 H 1.09004 * 117.49237 * 214.97568 * 8 5 4 10 10 C 1.50696 * 117.50175 * 359.97438 * 8 5 4 11 11 O 1.21283 * 119.99696 * 0.02562 * 10 8 5 12 12 N 1.34776 * 120.00287 * 180.02562 * 10 8 5 13 13 C 1.46499 * 120.00283 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47192 * 89.99680 * 13 12 10 15 15 H 1.08004 * 119.99639 * 0.02562 * 14 13 12 16 16 C 1.37866 * 120.00283 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00356 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47391 * 59.99476 * 18 16 14 20 20 H 1.48503 * 109.47495 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46745 * 299.99629 * 18 16 14 22 22 C 1.46500 * 119.99578 * 359.97438 * 12 10 8 23 23 C 1.53006 * 117.49593 * 188.62677 * 22 12 10 24 24 C 1.52995 * 117.50088 * 120.00425 * 22 12 10 25 25 H 1.08997 * 109.47463 * 60.00027 * 1 2 3 26 26 H 1.09001 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46833 * 299.99619 * 1 2 3 28 28 H 1.09009 * 109.47292 * 240.00255 * 2 1 3 29 29 H 1.09004 * 109.47266 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47012 * 300.00126 * 3 2 1 31 31 H 1.09000 * 109.47290 * 60.00167 * 3 2 1 32 32 H 1.08997 * 109.47180 * 305.00150 * 4 2 1 33 33 H 1.09003 * 109.47209 * 184.99622 * 4 2 1 34 34 H 1.08999 * 117.49685 * 145.02116 * 7 5 4 35 35 H 1.08997 * 117.50044 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.46901 * 209.99594 * 13 12 10 37 37 H 1.09004 * 109.46890 * 330.00186 * 13 12 10 38 38 H 0.96999 * 120.00302 * 179.97438 * 17 16 14 39 39 H 1.09000 * 115.55203 * 334.32716 * 22 12 10 40 40 H 1.08999 * 117.49799 * 359.97438 * 23 22 12 41 41 H 1.08993 * 117.49685 * 145.02180 * 23 22 12 42 42 H 1.09004 * 117.50356 * 214.97826 * 24 22 12 43 43 H 1.09002 * 117.49622 * 359.97112 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 1.5388 -2.6155 0.1867 7 6 0.6791 -2.7109 2.2654 8 6 2.1540 -3.1170 2.2937 9 1 2.3987 -4.1433 2.0199 10 6 3.0249 -2.5033 3.3595 11 8 3.2895 -1.3204 3.3195 12 7 3.5097 -3.2689 4.3571 13 6 4.3568 -2.6724 5.3928 14 6 3.4939 -2.1829 6.5272 15 1 2.4217 -2.3045 6.4813 16 6 4.0730 -1.5800 7.6235 17 7 5.3787 -1.4325 7.6796 18 14 3.0034 -0.9739 9.0299 19 1 2.2486 -2.1158 9.6055 20 1 3.8620 -0.3680 10.0792 21 1 2.0493 0.0448 8.5226 22 6 3.1896 -4.6977 4.4056 23 6 3.5966 -5.4706 5.6618 24 6 4.3568 -5.6854 4.3515 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1264 -0.6444 1.2950 34 1 -0.0464 -3.4700 1.9730 35 1 0.3387 -1.9998 3.0181 36 1 5.0565 -3.4206 5.7653 37 1 4.9114 -1.8345 4.9705 38 1 5.7862 -1.0080 8.4507 39 1 2.2611 -4.9884 3.9143 40 1 4.1029 -4.9160 6.4519 41 1 2.9358 -6.2698 5.9971 42 1 4.1961 -6.6262 3.8248 43 1 5.3628 -5.2722 4.2793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387724662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:54 Heat of formation + Delta-G solvation = -0.680445 kcal Electronic energy + Delta-G solvation = -20787.027525 eV Core-core repulsion = 17833.438913 eV Total energy + Delta-G solvation = -2953.588613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.69665 -37.64053 -36.27779 -34.72473 -33.17084 -31.91044 -27.99458 -27.02773 -26.94495 -24.09563 -22.50176 -21.88959 -21.40927 -20.71187 -19.88840 -17.91045 -16.82052 -16.37895 -15.48071 -14.98670 -14.89227 -14.34135 -14.03735 -13.79189 -13.59841 -13.31894 -13.06625 -12.43834 -12.20618 -12.12961 -11.86827 -11.66712 -11.39918 -11.31298 -10.98795 -10.91058 -10.84376 -10.70156 -10.58665 -10.51152 -10.46514 -10.10550 -10.06620 -9.79347 -9.61172 -9.47828 -8.61942 -8.41832 -7.47635 -6.02621 -4.07003 3.20074 3.32607 3.36947 3.40196 3.82696 4.13937 4.42510 4.50354 4.74832 4.96259 5.10502 5.13716 5.19667 5.29791 5.30884 5.34388 5.38236 5.47093 5.56660 5.66149 5.73443 5.86499 5.88188 5.93697 5.96034 6.02214 6.13016 6.19328 6.24135 6.26755 6.33501 6.45958 6.47132 6.63879 6.76320 6.91725 7.09459 7.45788 7.58051 7.94011 8.25229 8.47859 8.92865 9.15751 9.57906 11.05148 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.005854 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.183556 B = 4782.087426 C = 5807.184496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.115 4.115 6 H 0.104 0.896 7 C -0.154 4.154 8 C -0.188 4.188 9 H 0.115 0.885 10 C 0.538 3.462 11 O -0.533 6.533 12 N -0.568 5.568 13 C 0.245 3.755 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.079 3.921 23 C -0.175 4.175 24 C -0.204 4.204 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 -5.004 -12.995 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.134 4.134 6 H 0.122 0.878 7 C -0.192 4.192 8 C -0.209 4.209 9 H 0.133 0.867 10 C 0.325 3.675 11 O -0.410 6.410 12 N -0.298 5.298 13 C 0.126 3.874 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.028 4.028 23 C -0.213 4.213 24 C -0.243 4.243 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.337 -4.268 -12.865 15.413 hybrid contribution -0.518 0.051 0.975 1.105 sum -7.854 -4.217 -11.890 14.861 Atomic orbital electron populations 1.21840 0.95733 1.01544 1.01043 1.21213 0.95530 0.96185 0.98749 1.21810 1.01124 0.96177 1.01201 1.21286 1.02214 0.90958 0.96685 1.22340 1.01781 0.95835 0.93442 0.87815 1.23017 0.90538 1.03414 1.02226 1.22405 0.97292 1.00544 1.00696 0.86679 1.19350 0.80372 0.86240 0.81510 1.90663 1.59266 1.15214 1.75906 1.47695 1.49962 1.06225 1.25883 1.19274 0.89658 0.93888 0.84552 1.21355 0.93652 1.38612 1.02233 0.92553 1.24915 0.94996 0.95747 0.98399 1.69925 1.09231 1.43870 1.30485 0.86588 0.80281 0.79143 0.81593 1.20243 1.21217 1.20257 1.21480 0.97105 0.81004 1.03172 1.23329 1.03342 1.02033 0.92598 1.23390 0.98163 1.00635 1.02154 0.93579 0.92634 0.92851 0.91899 0.92687 0.93363 0.92654 0.91034 0.90189 0.88597 0.88362 0.94894 0.93918 0.92712 0.86598 0.86411 0.89028 0.89092 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.01 37.16 0.33 -1.24 16 2 C -0.10 -1.20 2.88 -90.62 -0.26 -1.46 16 3 C -0.15 -1.75 9.19 37.16 0.34 -1.41 16 4 C -0.07 -1.14 3.22 -26.73 -0.09 -1.22 16 5 C -0.12 -1.58 4.72 -90.62 -0.43 -2.01 16 6 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 7 C -0.15 -2.09 9.88 -26.73 -0.26 -2.35 16 8 C -0.19 -2.92 4.93 -91.77 -0.45 -3.37 16 9 H 0.12 1.53 7.21 -51.93 -0.37 1.16 16 10 C 0.54 11.31 7.44 -10.99 -0.08 11.23 16 11 O -0.53 -13.06 12.68 5.55 0.07 -12.99 16 12 N -0.57 -12.27 2.79 -167.47 -0.47 -12.73 16 13 C 0.25 6.41 4.46 -5.19 -0.02 6.39 16 14 C -0.52 -14.67 9.19 -34.44 -0.32 -14.99 16 15 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 18 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.08 1.35 5.79 -67.93 -0.39 0.95 16 23 C -0.18 -2.94 9.72 -26.73 -0.26 -3.20 16 24 C -0.20 -3.09 10.13 -26.73 -0.27 -3.36 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.27 7.30 -51.93 -0.38 0.89 16 33 H 0.08 1.43 6.92 -51.93 -0.36 1.07 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.51 8.03 -51.93 -0.42 1.09 16 36 H 0.03 0.87 6.33 -51.93 -0.33 0.54 16 37 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.12 1.68 6.86 -51.93 -0.36 1.32 16 40 H 0.12 2.40 6.29 -51.93 -0.33 2.07 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -31.08 344.99 -9.24 -40.33 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.50 Total: 3.50 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.26 Total: -14.39 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.27 Total: -38.58 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.08 -9.24 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387724662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.645 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds