Wall clock time and date at job start Mon Mar 30 2020 06:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 C 1.52998 * 109.47379 * 120.00064 * 2 1 3 5 5 C 1.53006 * 109.47210 * 65.00074 * 4 2 1 6 6 H 1.09002 * 115.56020 * 29.30642 * 5 4 2 7 7 C 1.52997 * 117.49537 * 243.62514 * 5 4 2 8 8 C 1.53000 * 117.49776 * 175.00059 * 5 4 2 9 9 H 1.09004 * 117.49237 * 214.97568 * 8 5 4 10 10 C 1.50696 * 117.50175 * 359.97438 * 8 5 4 11 11 O 1.21283 * 119.99696 * 0.02562 * 10 8 5 12 12 N 1.34776 * 120.00287 * 180.02562 * 10 8 5 13 13 C 1.46499 * 120.00283 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47192 * 89.99680 * 13 12 10 15 15 H 1.08004 * 119.99639 * 0.02562 * 14 13 12 16 16 C 1.37866 * 120.00283 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00356 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47391 * 59.99476 * 18 16 14 20 20 H 1.48503 * 109.47495 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46745 * 299.99629 * 18 16 14 22 22 C 1.46500 * 119.99578 * 359.97438 * 12 10 8 23 23 C 1.53006 * 117.49593 * 188.62677 * 22 12 10 24 24 C 1.52995 * 117.50088 * 120.00425 * 22 12 10 25 25 H 1.08997 * 109.47463 * 60.00027 * 1 2 3 26 26 H 1.09001 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46833 * 299.99619 * 1 2 3 28 28 H 1.09009 * 109.47292 * 240.00255 * 2 1 3 29 29 H 1.09004 * 109.47266 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47012 * 300.00126 * 3 2 1 31 31 H 1.09000 * 109.47290 * 60.00167 * 3 2 1 32 32 H 1.08997 * 109.47180 * 305.00150 * 4 2 1 33 33 H 1.09003 * 109.47209 * 184.99622 * 4 2 1 34 34 H 1.08999 * 117.49685 * 145.02116 * 7 5 4 35 35 H 1.08997 * 117.50044 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.46901 * 209.99594 * 13 12 10 37 37 H 1.09004 * 109.46890 * 330.00186 * 13 12 10 38 38 H 0.96999 * 120.00302 * 179.97438 * 17 16 14 39 39 H 1.09000 * 115.55203 * 334.32716 * 22 12 10 40 40 H 1.08999 * 117.49799 * 359.97438 * 23 22 12 41 41 H 1.08993 * 117.49685 * 145.02180 * 23 22 12 42 42 H 1.09004 * 117.50356 * 214.97826 * 24 22 12 43 43 H 1.09002 * 117.49622 * 359.97112 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 1.5388 -2.6155 0.1867 7 6 0.6791 -2.7109 2.2654 8 6 2.1540 -3.1170 2.2937 9 1 2.3987 -4.1433 2.0199 10 6 3.0249 -2.5033 3.3595 11 8 3.2895 -1.3204 3.3195 12 7 3.5097 -3.2689 4.3571 13 6 4.3568 -2.6724 5.3928 14 6 3.4939 -2.1829 6.5272 15 1 2.4217 -2.3045 6.4813 16 6 4.0730 -1.5800 7.6235 17 7 5.3787 -1.4325 7.6796 18 14 3.0034 -0.9739 9.0299 19 1 2.2486 -2.1158 9.6055 20 1 3.8620 -0.3680 10.0792 21 1 2.0493 0.0448 8.5226 22 6 3.1896 -4.6977 4.4056 23 6 3.5966 -5.4706 5.6618 24 6 4.3568 -5.6854 4.3515 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1264 -0.6444 1.2950 34 1 -0.0464 -3.4700 1.9730 35 1 0.3387 -1.9998 3.0181 36 1 5.0565 -3.4206 5.7653 37 1 4.9114 -1.8345 4.9705 38 1 5.7862 -1.0080 8.4507 39 1 2.2611 -4.9884 3.9143 40 1 4.1029 -4.9160 6.4519 41 1 2.9358 -6.2698 5.9971 42 1 4.1961 -6.6262 3.8248 43 1 5.3628 -5.2722 4.2793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387724662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:53 Heat of formation + Delta-G solvation = -17.907124 kcal Electronic energy + Delta-G solvation = -20787.774530 eV Core-core repulsion = 17833.438913 eV Total energy + Delta-G solvation = -2954.335618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19522 -38.97263 -37.70188 -35.85859 -35.19359 -33.73201 -29.88958 -28.26987 -27.93220 -25.90439 -24.12183 -23.17342 -22.78207 -21.94280 -20.96367 -19.47735 -18.58339 -18.23116 -17.10323 -16.44894 -16.19130 -15.90412 -15.57088 -15.19391 -14.90607 -14.52171 -14.33886 -14.18299 -13.63634 -13.39753 -13.28494 -13.18614 -12.88607 -12.77001 -12.66301 -12.35910 -12.25136 -12.20211 -12.11104 -11.90094 -11.70700 -11.56635 -11.48429 -11.35645 -10.93685 -10.77506 -10.65963 -10.23092 -9.21344 -8.23125 -6.37996 1.32911 1.37146 1.44417 1.69915 2.23020 2.40601 2.91234 3.05188 3.14128 3.57437 3.76121 3.95278 3.99616 4.08639 4.10674 4.17652 4.23837 4.26108 4.39440 4.63320 4.79629 4.83133 4.85050 4.88043 4.90897 4.92734 5.00207 5.03464 5.07339 5.13087 5.17892 5.25197 5.26020 5.33625 5.40177 5.47294 5.54492 5.57034 5.69720 5.85247 6.05104 6.68734 6.83698 7.27680 7.53122 8.83078 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.005854 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.183556 B = 4782.087426 C = 5807.184496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.070 4.070 5 C -0.108 4.108 6 H 0.144 0.856 7 C -0.136 4.136 8 C -0.196 4.196 9 H 0.151 0.849 10 C 0.522 3.478 11 O -0.585 6.585 12 N -0.579 5.579 13 C 0.265 3.735 14 C -0.531 4.531 15 H 0.049 0.951 16 C 0.008 3.992 17 N -0.930 5.930 18 Si 0.964 3.036 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.062 3.938 23 C -0.185 4.185 24 C -0.180 4.180 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.141 0.859 35 H 0.070 0.930 36 H 0.022 0.978 37 H -0.009 1.009 38 H 0.267 0.733 39 H 0.156 0.844 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 -7.372 -14.693 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.108 4.108 5 C -0.126 4.126 6 H 0.161 0.839 7 C -0.173 4.173 8 C -0.217 4.217 9 H 0.168 0.832 10 C 0.313 3.687 11 O -0.466 6.466 12 N -0.308 5.308 13 C 0.144 3.856 14 C -0.570 4.570 15 H 0.067 0.933 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.043 4.043 23 C -0.222 4.222 24 C -0.218 4.218 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.009 0.991 38 H 0.075 0.925 39 H 0.173 0.827 40 H 0.090 0.910 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.061 -6.681 -14.573 18.927 hybrid contribution 0.401 0.826 1.503 1.761 sum -9.659 -5.855 -13.070 17.275 Atomic orbital electron populations 1.21803 0.94174 1.02476 1.01271 1.21187 0.96733 0.95665 0.97545 1.21838 1.00445 0.96667 1.01571 1.21124 0.99664 0.93101 0.96874 1.22504 1.01035 0.94098 0.94979 0.83860 1.23120 0.89891 1.03429 1.00906 1.22368 0.97563 1.02123 0.99638 0.83170 1.20474 0.80271 0.85807 0.82192 1.90644 1.61054 1.17711 1.77198 1.47705 1.49426 1.08598 1.25022 1.18636 0.89777 0.92042 0.85136 1.21553 0.93353 1.38948 1.03132 0.93286 1.25825 0.96338 0.95723 1.01167 1.70050 1.10976 1.44521 1.31404 0.85521 0.78479 0.78873 0.78276 1.18367 1.20252 1.20512 1.21983 0.99653 0.78415 1.04209 1.23286 1.04375 1.02657 0.91896 1.23430 0.96156 1.01432 1.00786 0.91681 0.91343 0.94297 0.89936 0.93862 0.90961 0.94249 0.94840 0.93914 0.84064 0.91094 0.95996 0.99123 0.92463 0.82659 0.91021 0.85539 0.84410 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.01 71.98 0.65 -2.08 16 2 C -0.09 -2.16 2.88 -10.80 -0.03 -2.19 16 3 C -0.15 -3.58 9.19 71.98 0.66 -2.92 16 4 C -0.07 -2.20 3.22 30.60 0.10 -2.10 16 5 C -0.11 -2.69 4.72 -10.79 -0.05 -2.74 16 6 H 0.14 2.53 8.08 -2.39 -0.02 2.51 16 7 C -0.14 -3.27 9.88 30.60 0.30 -2.97 16 8 C -0.20 -5.67 4.93 -11.54 -0.06 -5.72 16 9 H 0.15 3.29 7.21 -2.38 -0.02 3.28 16 10 C 0.52 22.68 7.44 87.66 0.65 23.34 16 11 O -0.59 -30.94 12.68 -3.04 -0.04 -30.98 16 12 N -0.58 -25.80 2.79 -802.15 -2.24 -28.04 16 13 C 0.27 14.86 4.46 85.63 0.38 15.24 16 14 C -0.53 -31.46 9.19 25.60 0.24 -31.22 16 15 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -57.60 13.29 21.44 0.28 -57.31 16 18 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 C 0.06 2.01 5.79 44.99 0.26 2.27 16 23 C -0.18 -6.00 9.72 30.60 0.30 -5.70 16 24 C -0.18 -5.04 10.13 30.59 0.31 -4.73 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.16 7.38 -2.39 -0.02 1.14 16 27 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.03 1.27 7.30 -2.39 -0.02 1.26 16 33 H 0.04 1.64 6.92 -2.39 -0.02 1.63 16 34 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 36 H 0.02 1.26 6.33 -2.39 -0.02 1.25 16 37 H -0.01 -0.61 7.42 -2.39 -0.02 -0.63 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.16 3.83 6.86 -2.39 -0.02 3.81 16 40 H 0.07 3.03 6.29 -2.39 -0.02 3.02 16 41 H 0.13 3.17 8.14 -2.39 -0.02 3.16 16 42 H 0.14 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 Total: -1.00 -75.45 344.99 5.16 -70.28 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.96 Total: 18.56 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.17 Total: -20.59 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.96 Total: -85.35 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.04 Total: -30.98 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -75.45 5.16 -70.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387724662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.378 kcal (2) G-P(sol) polarization free energy of solvation -75.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds