Wall clock time and date at job start Mon Mar 30 2020 07:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47162 * 2 1 4 4 C 1.53006 * 109.47181 * 119.99205 * 2 1 3 5 5 H 1.09006 * 109.46609 * 60.00494 * 4 2 1 6 6 O 1.42894 * 109.47505 * 300.00483 * 4 2 1 7 7 C 1.50697 * 109.47318 * 180.02562 * 4 2 1 8 8 C 1.40890 * 126.28987 * 85.02339 * 7 4 2 9 9 C 1.34856 * 107.41764 * 179.69982 * 8 7 4 10 10 N 1.36337 * 108.21648 * 0.27154 * 9 8 7 11 11 C 1.46501 * 125.63397 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47491 * 89.97368 * 11 10 9 13 13 C 1.52997 * 109.47452 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47247 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47018 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00339 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00251 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00328 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99650 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47225 * 90.00112 * 19 17 15 21 21 H 1.48504 * 109.47052 * 210.00290 * 19 17 15 22 22 H 1.48501 * 109.46913 * 330.00028 * 19 17 15 23 23 C 1.34854 * 126.29275 * 265.18915 * 7 4 2 24 24 H 1.09001 * 109.47622 * 300.00320 * 1 2 3 25 25 H 1.09002 * 109.47071 * 60.00615 * 1 2 3 26 26 H 1.09006 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47622 * 239.99680 * 2 1 3 28 28 H 1.09001 * 109.47113 * 59.99368 * 3 2 1 29 29 H 1.09002 * 109.47353 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46626 * 299.99657 * 3 2 1 31 31 H 0.96700 * 114.00406 * 300.00252 * 6 4 2 32 32 H 1.08002 * 126.29400 * 359.97404 * 8 7 4 33 33 H 1.07995 * 125.89299 * 180.24113 * 9 8 7 34 34 H 1.09005 * 109.47040 * 209.97474 * 11 10 9 35 35 H 1.08996 * 109.47091 * 329.96636 * 11 10 9 36 36 H 1.09005 * 109.47065 * 300.00091 * 12 11 10 37 37 H 1.09004 * 109.47287 * 59.99510 * 12 11 10 38 38 H 1.09001 * 109.47285 * 299.99697 * 13 12 11 39 39 H 1.09004 * 109.47140 * 59.99585 * 13 12 11 40 40 H 1.08993 * 109.47478 * 300.00107 * 14 13 12 41 41 H 1.09002 * 109.46609 * 60.00712 * 14 13 12 42 42 H 0.96998 * 119.99899 * 179.97438 * 18 17 15 43 43 H 1.07991 * 125.89267 * 0.02562 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -1.7488 1.2494 6 8 1.5636 -0.0475 2.4161 7 6 3.5469 -0.7206 1.2497 8 6 4.3803 0.3087 1.7303 9 6 5.6566 -0.0889 1.5522 10 7 5.6416 -1.3234 0.9737 11 6 6.8228 -2.1112 0.6128 12 6 7.2254 -2.9970 1.7935 13 6 8.4586 -3.8203 1.4163 14 6 8.8616 -4.7056 2.5973 15 6 10.0758 -5.5169 2.2255 16 1 10.5164 -5.4114 1.2451 17 6 10.6245 -6.3940 3.1370 18 7 11.6845 -7.1017 2.8127 19 14 9.8621 -6.5772 4.8325 20 1 8.8314 -7.6457 4.7990 21 1 10.9172 -6.9376 5.8134 22 1 9.2316 -5.2936 5.2329 23 6 4.3456 -1.7039 0.7873 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6765 1.9564 0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.8488 0.8742 2.4822 32 1 4.0567 1.2426 2.1658 33 1 6.5384 0.4737 1.8209 34 1 6.5923 -2.7374 -0.2492 35 1 7.6452 -1.4403 0.3648 36 1 7.4558 -2.3708 2.6555 37 1 6.4029 -3.6680 2.0414 38 1 8.2277 -4.4465 0.5545 39 1 9.2812 -3.1496 1.1681 40 1 9.0925 -4.0792 3.4588 41 1 8.0391 -5.3764 2.8458 42 1 12.0706 -7.7185 3.4541 43 1 4.0156 -2.6342 0.3493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395431045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:32 Heat of formation + Delta-G solvation = -34.769110 kcal Electronic energy + Delta-G solvation = -19608.564838 eV Core-core repulsion = 16653.498029 eV Total energy + Delta-G solvation = -2955.066808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33194 -38.25756 -35.54580 -33.88001 -33.08765 -31.57441 -29.48266 -28.68150 -27.34704 -26.02831 -24.56916 -22.02103 -20.61069 -20.25892 -20.05292 -19.57263 -17.50313 -16.73582 -16.32541 -15.44284 -15.19453 -14.73752 -14.56498 -14.19608 -13.80083 -13.76622 -13.12640 -12.97418 -12.73360 -12.65444 -12.32553 -12.24756 -12.05621 -11.94554 -11.89372 -11.42611 -11.25852 -11.05915 -10.99095 -10.82955 -10.70972 -10.09652 -9.99602 -9.81382 -9.69229 -9.24007 -8.57719 -8.40953 -8.07368 -6.08342 -4.06842 2.30105 2.91577 3.02072 3.28328 3.35997 3.39838 4.42011 4.42637 4.64055 4.72661 4.77682 4.86240 5.02168 5.12661 5.13936 5.25627 5.28664 5.36787 5.39900 5.45312 5.50725 5.59058 5.69088 5.72920 5.79774 5.86301 5.88516 6.08117 6.10655 6.14997 6.18967 6.39914 6.47348 6.56249 6.81139 6.96952 7.22813 7.24966 7.36056 7.42231 7.57631 7.74926 8.48957 8.95901 9.54257 11.05051 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.002953 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.920885 B = 9480.409660 C = 9728.581497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.152 4.152 4 C 0.186 3.814 5 H 0.096 0.904 6 O -0.556 6.556 7 C -0.203 4.203 8 C -0.195 4.195 9 C -0.011 4.011 10 N -0.439 5.439 11 C 0.102 3.898 12 C -0.135 4.135 13 C -0.100 4.100 14 C -0.013 4.013 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.002 4.002 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.370 0.630 32 H 0.129 0.871 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.263 0.737 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.488 16.936 -5.801 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.209 4.209 4 C 0.127 3.873 5 H 0.114 0.886 6 O -0.362 6.362 7 C -0.210 4.210 8 C -0.219 4.219 9 C -0.142 4.142 10 N -0.113 5.113 11 C -0.019 4.019 12 C -0.173 4.173 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.133 4.133 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.218 0.782 32 H 0.147 0.853 33 H 0.175 0.825 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.312 16.017 -5.723 25.734 hybrid contribution 0.148 0.234 0.755 0.804 sum -19.164 16.251 -4.967 25.613 Atomic orbital electron populations 1.21780 0.94930 1.01745 1.01679 1.21746 0.95943 0.97333 0.98984 1.21884 1.02235 0.95533 1.01215 1.20103 0.87455 0.95794 0.83969 0.88625 1.86545 1.76372 1.29017 1.44228 1.20001 0.95415 0.96651 1.08955 1.20515 0.91957 1.00301 1.09163 1.21796 0.99006 0.87968 1.05383 1.44288 1.06137 1.14751 1.46075 1.22099 0.85815 0.94717 0.99273 1.22094 1.00047 0.98324 0.96879 1.21414 0.94422 0.97667 1.00309 1.19558 0.96732 0.94830 0.93954 1.21144 1.11110 1.22025 1.01781 0.91061 1.25043 0.94690 0.95244 0.98557 1.69913 1.22179 1.26366 1.35783 0.86770 0.79089 0.78946 0.84430 1.20268 1.21333 1.19044 1.21537 0.82672 1.00750 1.08350 0.92125 0.93077 0.92859 0.90663 0.93008 0.91350 0.93003 0.78227 0.85299 0.82452 0.89366 0.89340 0.91740 0.91746 0.92546 0.92530 0.96652 0.97089 0.92701 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.05 37.15 0.34 -0.78 16 2 C -0.12 -1.02 2.80 -90.62 -0.25 -1.27 16 3 C -0.15 -1.17 8.43 37.16 0.31 -0.86 16 4 C 0.19 1.88 3.24 -27.88 -0.09 1.79 16 5 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 6 O -0.56 -5.99 12.51 -35.23 -0.44 -6.43 16 7 C -0.20 -2.32 4.61 -104.82 -0.48 -2.80 16 8 C -0.19 -2.18 8.45 -39.78 -0.34 -2.52 16 9 C -0.01 -0.13 11.43 -16.75 -0.19 -0.32 16 10 N -0.44 -5.38 2.75 -117.13 -0.32 -5.70 16 11 C 0.10 1.22 6.09 -4.04 -0.02 1.19 16 12 C -0.14 -2.02 5.54 -26.74 -0.15 -2.17 16 13 C -0.10 -1.84 5.15 -26.73 -0.14 -1.98 16 14 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 15 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 16 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 19 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 C 0.00 -0.02 11.35 -16.75 -0.19 -0.21 16 24 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.35 6.78 -51.93 -0.35 0.00 16 29 H 0.07 0.60 6.05 -51.93 -0.31 0.28 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.37 3.04 6.58 45.56 0.30 3.34 16 32 H 0.13 1.20 7.70 -52.49 -0.40 0.80 16 33 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -31.59 344.29 -8.24 -39.83 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.02 Total: 0.72 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -1.75 Total: -23.68 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.45 Total: -32.81 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.44 Total: -6.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.59 -8.24 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395431045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.062 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds