Wall clock time and date at job start Mon Mar 30 2020 07:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47162 * 2 1 4 4 C 1.53006 * 109.47181 * 119.99205 * 2 1 3 5 5 H 1.09006 * 109.46609 * 60.00494 * 4 2 1 6 6 O 1.42894 * 109.47505 * 300.00483 * 4 2 1 7 7 C 1.50697 * 109.47318 * 180.02562 * 4 2 1 8 8 C 1.40890 * 126.28987 * 85.02339 * 7 4 2 9 9 C 1.34856 * 107.41764 * 179.69982 * 8 7 4 10 10 N 1.36337 * 108.21648 * 0.27154 * 9 8 7 11 11 C 1.46501 * 125.63397 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47491 * 89.97368 * 11 10 9 13 13 C 1.52997 * 109.47452 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47247 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47018 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00339 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00251 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00328 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99650 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47225 * 90.00112 * 19 17 15 21 21 H 1.48504 * 109.47052 * 210.00290 * 19 17 15 22 22 H 1.48501 * 109.46913 * 330.00028 * 19 17 15 23 23 C 1.34854 * 126.29275 * 265.18915 * 7 4 2 24 24 H 1.09001 * 109.47622 * 300.00320 * 1 2 3 25 25 H 1.09002 * 109.47071 * 60.00615 * 1 2 3 26 26 H 1.09006 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47622 * 239.99680 * 2 1 3 28 28 H 1.09001 * 109.47113 * 59.99368 * 3 2 1 29 29 H 1.09002 * 109.47353 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46626 * 299.99657 * 3 2 1 31 31 H 0.96700 * 114.00406 * 300.00252 * 6 4 2 32 32 H 1.08002 * 126.29400 * 359.97404 * 8 7 4 33 33 H 1.07995 * 125.89299 * 180.24113 * 9 8 7 34 34 H 1.09005 * 109.47040 * 209.97474 * 11 10 9 35 35 H 1.08996 * 109.47091 * 329.96636 * 11 10 9 36 36 H 1.09005 * 109.47065 * 300.00091 * 12 11 10 37 37 H 1.09004 * 109.47287 * 59.99510 * 12 11 10 38 38 H 1.09001 * 109.47285 * 299.99697 * 13 12 11 39 39 H 1.09004 * 109.47140 * 59.99585 * 13 12 11 40 40 H 1.08993 * 109.47478 * 300.00107 * 14 13 12 41 41 H 1.09002 * 109.46609 * 60.00712 * 14 13 12 42 42 H 0.96998 * 119.99899 * 179.97438 * 18 17 15 43 43 H 1.07991 * 125.89267 * 0.02562 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -1.7488 1.2494 6 8 1.5636 -0.0475 2.4161 7 6 3.5469 -0.7206 1.2497 8 6 4.3803 0.3087 1.7303 9 6 5.6566 -0.0889 1.5522 10 7 5.6416 -1.3234 0.9737 11 6 6.8228 -2.1112 0.6128 12 6 7.2254 -2.9970 1.7935 13 6 8.4586 -3.8203 1.4163 14 6 8.8616 -4.7056 2.5973 15 6 10.0758 -5.5169 2.2255 16 1 10.5164 -5.4114 1.2451 17 6 10.6245 -6.3940 3.1370 18 7 11.6845 -7.1017 2.8127 19 14 9.8621 -6.5772 4.8325 20 1 8.8314 -7.6457 4.7990 21 1 10.9172 -6.9376 5.8134 22 1 9.2316 -5.2936 5.2329 23 6 4.3456 -1.7039 0.7873 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6765 1.9564 0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.8488 0.8742 2.4822 32 1 4.0567 1.2426 2.1658 33 1 6.5384 0.4737 1.8209 34 1 6.5923 -2.7374 -0.2492 35 1 7.6452 -1.4403 0.3648 36 1 7.4558 -2.3708 2.6555 37 1 6.4029 -3.6680 2.0414 38 1 8.2277 -4.4465 0.5545 39 1 9.2812 -3.1496 1.1681 40 1 9.0925 -4.0792 3.4588 41 1 8.0391 -5.3764 2.8458 42 1 12.0706 -7.7185 3.4541 43 1 4.0156 -2.6342 0.3493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395431045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:31 Heat of formation + Delta-G solvation = -52.770552 kcal Electronic energy + Delta-G solvation = -19609.345439 eV Core-core repulsion = 16653.498029 eV Total energy + Delta-G solvation = -2955.847409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.18458 -39.02900 -36.95158 -34.89631 -34.57687 -33.09156 -30.48603 -29.95358 -27.98241 -27.16443 -25.79723 -23.44766 -21.86106 -21.32986 -20.97540 -20.38060 -18.90392 -18.36409 -17.09421 -16.45713 -16.38420 -16.11868 -15.57337 -15.45022 -14.91213 -14.65890 -14.55177 -14.05243 -13.89685 -13.80785 -13.51990 -13.29849 -13.02269 -12.91625 -12.85936 -12.68487 -12.49599 -12.15449 -12.10288 -11.80330 -11.69965 -11.61178 -11.48688 -11.44174 -11.32476 -10.82040 -10.79212 -9.29863 -8.93699 -8.32356 -6.36299 1.33284 1.34824 1.41418 1.46681 2.07742 2.13177 2.33193 3.03140 3.70314 3.79775 3.94873 3.99228 4.06538 4.16605 4.18106 4.34422 4.35002 4.38786 4.57448 4.62675 4.66346 4.73913 4.82725 4.84832 4.91038 4.97999 5.07534 5.09830 5.12957 5.13897 5.26214 5.32251 5.44509 5.50965 5.51587 5.57205 5.64303 5.64567 6.12736 6.25609 6.38964 6.55612 6.72246 6.89204 7.28798 8.84347 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.002953 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.920885 B = 9480.409660 C = 9728.581497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.148 4.148 4 C 0.187 3.813 5 H 0.090 0.910 6 O -0.569 6.569 7 C -0.207 4.207 8 C -0.200 4.200 9 C -0.025 4.025 10 N -0.445 5.445 11 C 0.109 3.891 12 C -0.121 4.121 13 C -0.092 4.092 14 C -0.014 4.014 15 C -0.533 4.533 16 H 0.035 0.965 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.950 3.050 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.249 1.249 23 C -0.021 4.021 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.380 0.620 32 H 0.145 0.855 33 H 0.173 0.827 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.266 0.734 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.269 18.267 -5.189 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.205 4.205 4 C 0.128 3.872 5 H 0.108 0.892 6 O -0.376 6.376 7 C -0.214 4.214 8 C -0.224 4.224 9 C -0.155 4.155 10 N -0.120 5.120 11 C -0.012 4.012 12 C -0.160 4.160 13 C -0.130 4.130 14 C -0.051 4.051 15 C -0.571 4.571 16 H 0.053 0.947 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.773 3.227 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.173 1.173 23 C -0.152 4.152 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.162 0.838 33 H 0.190 0.810 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.075 0.925 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.110 17.373 -5.121 27.815 hybrid contribution 0.725 -0.163 0.500 0.896 sum -20.386 17.210 -4.621 27.076 Atomic orbital electron populations 1.21755 0.94354 1.01807 1.01951 1.21677 0.96329 0.97528 0.97924 1.21849 1.01521 0.95172 1.01987 1.20114 0.86772 0.95829 0.84519 0.89166 1.86519 1.76544 1.29949 1.44612 1.20226 0.96068 0.96592 1.08475 1.20785 0.91868 1.00865 1.08876 1.22191 0.99908 0.88041 1.05386 1.44301 1.06108 1.14981 1.46563 1.21972 0.86393 0.94763 0.98073 1.21871 0.97964 0.98093 0.98029 1.21250 0.96159 0.97374 0.98246 1.19543 0.94596 0.95027 0.95968 1.21542 1.12611 1.22609 1.00367 0.94692 1.26028 0.95179 0.94956 1.03236 1.70063 1.24020 1.27546 1.37555 0.85663 0.78392 0.79758 0.78853 1.19229 1.20890 1.17299 1.21871 0.82826 1.01521 1.08938 0.92476 0.92133 0.92951 0.90943 0.92102 0.92344 0.92398 0.77067 0.83751 0.80971 0.88187 0.88008 0.92134 0.92231 0.92506 0.92455 0.96562 0.96737 0.92484 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.05 71.98 0.65 -1.30 16 2 C -0.12 -1.76 2.80 -10.79 -0.03 -1.79 16 3 C -0.15 -2.01 8.43 71.98 0.61 -1.41 16 4 C 0.19 3.52 3.24 29.85 0.10 3.62 16 5 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 6 O -0.57 -11.38 12.51 -148.98 -1.86 -13.24 16 7 C -0.21 -4.39 4.61 -19.99 -0.09 -4.49 16 8 C -0.20 -4.09 8.45 22.14 0.19 -3.90 16 9 C -0.03 -0.54 11.43 83.22 0.95 0.41 16 10 N -0.45 -10.05 2.75 -524.49 -1.44 -11.49 16 11 C 0.11 2.37 6.09 86.38 0.53 2.89 16 12 C -0.12 -3.39 5.54 30.59 0.17 -3.22 16 13 C -0.09 -3.29 5.15 30.59 0.16 -3.13 16 14 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 15 C -0.53 -30.68 9.66 25.60 0.25 -30.44 16 16 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 17 C 0.00 0.16 5.47 84.66 0.46 0.62 16 18 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 19 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 22 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 23 C -0.02 -0.47 11.35 83.21 0.94 0.48 16 24 H 0.06 0.83 7.68 -2.39 -0.02 0.81 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 0.70 6.78 -2.39 -0.02 0.69 16 29 H 0.06 0.92 6.05 -2.39 -0.01 0.91 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.38 5.55 6.58 -74.06 -0.49 5.07 16 32 H 0.14 2.38 7.70 -2.91 -0.02 2.36 16 33 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 41 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 42 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 43 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -67.65 344.29 4.29 -63.35 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.42 Total: 16.58 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 5.00 Total: -42.17 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -1.14 Total: -71.09 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.86 Total: -13.24 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -67.65 4.29 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395431045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.582 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds