Wall clock time and date at job start Mon Mar 30 2020 06:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47451 * 2 1 4 4 C 1.52998 * 109.47186 * 120.00458 * 2 1 3 5 5 C 1.53005 * 109.47274 * 175.00035 * 4 2 1 6 6 H 1.08994 * 115.55845 * 29.30590 * 5 4 2 7 7 C 1.53000 * 117.49538 * 243.61889 * 5 4 2 8 8 C 1.53001 * 117.49928 * 174.99718 * 5 4 2 9 9 H 1.08996 * 117.51672 * 214.96464 * 8 5 4 10 10 C 1.50701 * 117.49938 * 359.97438 * 8 5 4 11 11 O 1.21277 * 120.00045 * 0.02562 * 10 8 5 12 12 N 1.34777 * 120.00154 * 180.02562 * 10 8 5 13 13 C 1.47431 * 125.64686 * 359.96308 * 12 10 8 14 14 C 1.55117 * 104.93963 * 204.03651 * 13 12 10 15 15 C 1.55150 * 101.48775 * 323.22067 * 14 13 12 16 16 H 1.09007 * 110.71925 * 276.83208 * 15 14 13 17 17 C 1.50694 * 110.72149 * 153.73787 * 15 14 13 18 18 H 1.08002 * 120.00179 * 243.83899 * 17 15 14 19 19 C 1.37879 * 120.00472 * 63.84217 * 17 15 14 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.47016 * 125.65042 * 179.97438 * 12 10 8 26 26 H 1.09000 * 109.46626 * 299.99931 * 1 2 3 27 27 H 1.08995 * 109.47196 * 59.99997 * 1 2 3 28 28 H 1.08997 * 109.47254 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47142 * 240.00172 * 2 1 3 30 30 H 1.09002 * 109.47404 * 300.00630 * 3 2 1 31 31 H 1.09010 * 109.47203 * 60.00351 * 3 2 1 32 32 H 1.09001 * 109.47549 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47950 * 54.99526 * 4 2 1 34 34 H 1.09006 * 109.46952 * 294.99363 * 4 2 1 35 35 H 1.09001 * 117.49806 * 145.01858 * 7 5 4 36 36 H 1.09003 * 117.52075 * 359.97438 * 7 5 4 37 37 H 1.09003 * 110.36043 * 322.99670 * 13 12 10 38 38 H 1.08995 * 110.36660 * 85.20622 * 13 12 10 39 39 H 1.08997 * 111.15910 * 205.12478 * 14 13 12 40 40 H 1.09001 * 110.93816 * 81.21602 * 14 13 12 41 41 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.88413 * 59.48871 * 25 12 10 43 43 H 1.09002 * 110.00896 * 298.39617 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 1 4.0721 -0.0357 0.6420 7 6 4.1697 -2.2346 1.1153 8 6 4.2803 -1.4198 2.4055 9 1 5.2583 -1.0119 2.6609 10 6 3.4291 -1.8465 3.5737 11 8 2.2242 -1.7179 3.5250 12 7 4.0070 -2.3711 4.6725 13 6 5.4532 -2.5837 4.8643 14 6 5.5544 -3.7143 5.9215 15 6 4.3627 -3.3727 6.8543 16 1 4.6471 -2.6108 7.5802 17 6 3.8602 -4.6101 7.5524 18 1 2.8588 -4.9678 7.3633 19 6 4.6787 -5.2857 8.4325 20 7 5.8983 -4.8504 8.6624 21 14 4.0557 -6.8191 9.2983 22 1 3.4105 -6.4364 10.5799 23 1 3.0658 -7.5087 8.4323 24 1 5.1953 -7.7313 9.5709 25 6 3.2996 -2.8263 5.8782 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6054 -1.7199 1.2952 34 1 1.7517 -0.1584 2.1370 35 1 5.0749 -2.3625 0.5216 36 1 3.4816 -3.0800 1.1116 37 1 5.9181 -2.8950 3.9289 38 1 5.9242 -1.6741 5.2369 39 1 6.5000 -3.6646 6.4614 40 1 5.4211 -4.6926 5.4596 41 1 6.4741 -5.3254 9.2818 42 1 2.5944 -3.6158 5.6184 43 1 2.7690 -1.9918 6.3367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397584742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:21 Heat of formation + Delta-G solvation = -34.393414 kcal Electronic energy + Delta-G solvation = -20379.831500 eV Core-core repulsion = 17424.780983 eV Total energy + Delta-G solvation = -2955.050517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.90099 -37.79147 -36.30574 -34.92099 -33.01561 -30.36949 -28.41743 -27.46195 -27.15263 -25.41992 -23.50875 -21.95876 -21.21537 -19.88731 -19.57613 -18.33577 -16.98300 -16.49321 -15.31200 -15.19512 -14.90987 -14.55352 -14.52101 -13.72377 -13.53020 -13.00502 -12.71900 -12.60711 -12.47880 -12.37389 -12.20532 -11.80980 -11.65395 -11.30069 -11.27798 -11.03339 -10.94850 -10.85652 -10.80556 -10.62515 -10.48296 -10.02012 -9.89027 -9.76535 -9.48447 -9.06533 -8.95756 -8.49203 -7.93963 -6.11580 -4.14658 2.90963 3.27066 3.33920 3.37437 3.54684 3.97083 4.38188 4.56921 4.83871 4.91112 4.99809 5.02916 5.13925 5.22045 5.31090 5.39002 5.58195 5.64480 5.70720 5.71909 5.78338 5.86011 5.92449 5.93116 6.02129 6.05660 6.07424 6.15474 6.25422 6.28270 6.33046 6.46159 6.65217 6.70429 6.86892 7.01914 7.13262 7.46442 7.69755 7.87633 8.19098 8.28079 8.70484 8.87066 9.50175 10.98283 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038590 B = 0.003733 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.403287 B = 7498.775537 C = 7861.809144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.073 4.073 5 C -0.118 4.118 6 H 0.110 0.890 7 C -0.153 4.153 8 C -0.184 4.184 9 H 0.118 0.882 10 C 0.548 3.452 11 O -0.550 6.550 12 N -0.607 5.607 13 C 0.092 3.908 14 C -0.108 4.108 15 C 0.043 3.957 16 H 0.040 0.960 17 C -0.515 4.515 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.274 1.274 24 H -0.286 1.286 25 C 0.112 3.888 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 8.409 -15.484 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.111 4.111 5 C -0.137 4.137 6 H 0.127 0.873 7 C -0.190 4.190 8 C -0.206 4.206 9 H 0.136 0.864 10 C 0.337 3.663 11 O -0.430 6.430 12 N -0.339 5.339 13 C -0.031 4.031 14 C -0.146 4.146 15 C 0.024 3.976 16 H 0.058 0.942 17 C -0.553 4.553 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.198 1.198 24 H -0.212 1.212 25 C -0.010 4.010 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.030 8.460 -15.443 17.725 hybrid contribution 0.050 -0.874 0.643 1.086 sum -1.980 7.586 -14.801 16.749 Atomic orbital electron populations 1.21805 0.95470 1.01675 1.01324 1.21184 0.95576 0.96147 0.98879 1.21888 1.00923 0.96290 1.01335 1.21274 0.91235 1.01510 0.97044 1.22468 0.96551 0.96351 0.98288 0.87254 1.23040 1.03223 0.95402 0.97370 1.22260 1.01400 1.07476 0.89419 0.86425 1.19245 0.87467 0.77451 0.82168 1.90644 1.14615 1.56428 1.81311 1.48671 1.08976 1.60161 1.16048 1.22578 0.80702 0.99892 0.99914 1.22775 1.02015 0.95072 0.94787 1.19718 0.89873 0.96382 0.91615 0.94181 1.21039 0.99873 1.09650 1.24753 0.92293 1.24953 0.94871 0.97603 0.96325 1.69943 1.07118 1.39952 1.35676 0.86557 0.78428 0.82851 0.79988 1.20599 1.19838 1.21204 1.22313 0.96744 0.97580 0.84335 0.92661 0.93203 0.92770 0.91671 0.93280 0.92724 0.92688 0.91292 0.90193 0.88213 0.88399 0.92146 0.92486 0.89889 0.92259 0.92893 0.92186 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.10 -1.04 2.92 -90.63 -0.26 -1.31 16 3 C -0.15 -1.38 9.01 37.15 0.33 -1.04 16 4 C -0.07 -0.97 3.22 -26.73 -0.09 -1.05 16 5 C -0.12 -1.42 5.52 -90.62 -0.50 -1.92 16 6 H 0.11 1.10 6.38 -51.93 -0.33 0.77 16 7 C -0.15 -1.82 9.88 -26.73 -0.26 -2.09 16 8 C -0.18 -2.57 5.26 -91.77 -0.48 -3.06 16 9 H 0.12 1.46 7.78 -51.93 -0.40 1.05 16 10 C 0.55 10.10 7.61 -10.98 -0.08 10.02 16 11 O -0.55 -11.45 13.43 5.56 0.07 -11.37 16 12 N -0.61 -11.82 3.33 -170.39 -0.57 -12.39 16 13 C 0.09 1.63 6.48 -2.41 -0.02 1.61 16 14 C -0.11 -2.33 5.86 -24.47 -0.14 -2.47 16 15 C 0.04 1.04 2.82 -89.94 -0.25 0.78 16 16 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 17 C -0.51 -13.72 8.49 -34.44 -0.29 -14.01 16 18 H 0.06 1.57 7.55 -52.49 -0.40 1.18 16 19 C 0.06 1.73 5.35 -17.82 -0.10 1.64 16 20 N -0.89 -24.38 12.29 55.43 0.68 -23.70 16 21 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.11 2.46 6.46 -3.07 -0.02 2.44 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.05 0.48 6.41 -51.93 -0.33 0.15 16 33 H 0.07 1.04 7.30 -51.93 -0.38 0.66 16 34 H 0.08 1.25 6.92 -51.93 -0.36 0.89 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.28 8.03 -51.93 -0.42 0.86 16 37 H 0.06 0.92 7.67 -51.93 -0.40 0.53 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.88 7.65 -51.93 -0.40 1.48 16 40 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.06 1.39 7.64 -51.93 -0.40 1.00 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -28.34 339.06 -9.14 -37.48 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.59 Total: 0.69 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.82 Total: -11.59 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.11 Total: -36.09 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.34 -9.14 -37.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397584742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.088 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds