Wall clock time and date at job start Mon Mar 30 2020 06:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47451 * 2 1 4 4 C 1.52998 * 109.47186 * 120.00458 * 2 1 3 5 5 C 1.53005 * 109.47274 * 175.00035 * 4 2 1 6 6 H 1.08994 * 115.55845 * 29.30590 * 5 4 2 7 7 C 1.53000 * 117.49538 * 243.61889 * 5 4 2 8 8 C 1.53001 * 117.49928 * 174.99718 * 5 4 2 9 9 H 1.08996 * 117.51672 * 214.96464 * 8 5 4 10 10 C 1.50701 * 117.49938 * 359.97438 * 8 5 4 11 11 O 1.21277 * 120.00045 * 0.02562 * 10 8 5 12 12 N 1.34777 * 120.00154 * 180.02562 * 10 8 5 13 13 C 1.47431 * 125.64686 * 359.96308 * 12 10 8 14 14 C 1.55117 * 104.93963 * 204.03651 * 13 12 10 15 15 C 1.55150 * 101.48775 * 323.22067 * 14 13 12 16 16 H 1.09007 * 110.71925 * 276.83208 * 15 14 13 17 17 C 1.50694 * 110.72149 * 153.73787 * 15 14 13 18 18 H 1.08002 * 120.00179 * 243.83899 * 17 15 14 19 19 C 1.37879 * 120.00472 * 63.84217 * 17 15 14 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.47016 * 125.65042 * 179.97438 * 12 10 8 26 26 H 1.09000 * 109.46626 * 299.99931 * 1 2 3 27 27 H 1.08995 * 109.47196 * 59.99997 * 1 2 3 28 28 H 1.08997 * 109.47254 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47142 * 240.00172 * 2 1 3 30 30 H 1.09002 * 109.47404 * 300.00630 * 3 2 1 31 31 H 1.09010 * 109.47203 * 60.00351 * 3 2 1 32 32 H 1.09001 * 109.47549 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47950 * 54.99526 * 4 2 1 34 34 H 1.09006 * 109.46952 * 294.99363 * 4 2 1 35 35 H 1.09001 * 117.49806 * 145.01858 * 7 5 4 36 36 H 1.09003 * 117.52075 * 359.97438 * 7 5 4 37 37 H 1.09003 * 110.36043 * 322.99670 * 13 12 10 38 38 H 1.08995 * 110.36660 * 85.20622 * 13 12 10 39 39 H 1.08997 * 111.15910 * 205.12478 * 14 13 12 40 40 H 1.09001 * 110.93816 * 81.21602 * 14 13 12 41 41 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.88413 * 59.48871 * 25 12 10 43 43 H 1.09002 * 110.00896 * 298.39617 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 1 4.0721 -0.0357 0.6420 7 6 4.1697 -2.2346 1.1153 8 6 4.2803 -1.4198 2.4055 9 1 5.2583 -1.0119 2.6609 10 6 3.4291 -1.8465 3.5737 11 8 2.2242 -1.7179 3.5250 12 7 4.0070 -2.3711 4.6725 13 6 5.4532 -2.5837 4.8643 14 6 5.5544 -3.7143 5.9215 15 6 4.3627 -3.3727 6.8543 16 1 4.6471 -2.6108 7.5802 17 6 3.8602 -4.6101 7.5524 18 1 2.8588 -4.9678 7.3633 19 6 4.6787 -5.2857 8.4325 20 7 5.8983 -4.8504 8.6624 21 14 4.0557 -6.8191 9.2983 22 1 3.4105 -6.4364 10.5799 23 1 3.0658 -7.5087 8.4323 24 1 5.1953 -7.7313 9.5709 25 6 3.2996 -2.8263 5.8782 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6054 -1.7199 1.2952 34 1 1.7517 -0.1584 2.1370 35 1 5.0749 -2.3625 0.5216 36 1 3.4816 -3.0800 1.1116 37 1 5.9181 -2.8950 3.9289 38 1 5.9242 -1.6741 5.2369 39 1 6.5000 -3.6646 6.4614 40 1 5.4211 -4.6926 5.4596 41 1 6.4741 -5.3254 9.2818 42 1 2.5944 -3.6158 5.6184 43 1 2.7690 -1.9918 6.3367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397584742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:21 Heat of formation + Delta-G solvation = -48.450886 kcal Electronic energy + Delta-G solvation = -20380.441078 eV Core-core repulsion = 17424.780983 eV Total energy + Delta-G solvation = -2955.660095 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27363 -39.16487 -37.69355 -35.89254 -34.96010 -32.16237 -30.10596 -28.48935 -27.95502 -27.16171 -25.03923 -23.35366 -22.26495 -21.43336 -20.75554 -19.77198 -18.66299 -18.07810 -16.81233 -16.57411 -16.34558 -16.14421 -15.58369 -15.03604 -14.61770 -14.43213 -14.27969 -14.11856 -13.64382 -13.60245 -13.16136 -13.08850 -13.05074 -12.91136 -12.87083 -12.70064 -12.49652 -12.31204 -11.91172 -11.69574 -11.61485 -11.48974 -11.37762 -10.99598 -10.98055 -10.90386 -10.52710 -10.43139 -9.54389 -8.17800 -6.27164 1.41139 1.42695 1.52336 1.55136 2.09139 2.42659 2.89340 3.13975 3.51377 3.71664 3.94863 4.04789 4.07152 4.14806 4.23715 4.31387 4.37391 4.44471 4.46639 4.50479 4.70506 4.78438 4.81703 4.85743 4.88698 4.94769 4.97914 5.08633 5.10874 5.12654 5.19757 5.26547 5.31647 5.38449 5.42154 5.56955 5.57924 5.67302 5.75938 5.85533 6.26289 6.69201 6.78532 7.23033 7.40291 8.91357 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038590 B = 0.003733 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.403287 B = 7498.775537 C = 7861.809144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.070 4.070 5 C -0.110 4.110 6 H 0.141 0.859 7 C -0.137 4.137 8 C -0.197 4.197 9 H 0.144 0.856 10 C 0.540 3.460 11 O -0.583 6.583 12 N -0.613 5.613 13 C 0.105 3.895 14 C -0.100 4.100 15 C 0.038 3.962 16 H 0.017 0.983 17 C -0.538 4.538 18 H 0.048 0.952 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.954 3.046 22 H -0.276 1.276 23 H -0.273 1.273 24 H -0.279 1.279 25 C 0.123 3.877 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.264 0.736 42 H 0.039 0.961 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 8.945 -17.687 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.107 4.107 5 C -0.128 4.128 6 H 0.159 0.841 7 C -0.175 4.175 8 C -0.218 4.218 9 H 0.161 0.839 10 C 0.331 3.669 11 O -0.464 6.464 12 N -0.346 5.346 13 C -0.017 4.017 14 C -0.138 4.138 15 C 0.019 3.981 16 H 0.035 0.965 17 C -0.576 4.576 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.780 3.220 22 H -0.202 1.202 23 H -0.198 1.198 24 H -0.204 1.204 25 C 0.000 4.000 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.154 0.846 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.708 9.004 -17.660 19.835 hybrid contribution -0.438 -1.029 1.345 1.749 sum -1.146 7.974 -16.315 18.196 Atomic orbital electron populations 1.21825 0.95637 1.01302 1.01673 1.21157 0.95518 0.96868 0.97768 1.21869 1.01595 0.95162 1.01567 1.21145 0.92582 0.99761 0.97250 1.22615 0.95525 0.97644 0.97048 0.84137 1.23165 1.04116 0.94536 0.95661 1.22285 1.01874 1.09545 0.88106 0.83852 1.20168 0.87682 0.76360 0.82678 1.90639 1.16438 1.57462 1.81879 1.48753 1.09503 1.60668 1.15627 1.22549 0.79857 0.99045 1.00275 1.22541 1.00065 0.95963 0.95249 1.19627 0.91579 0.94963 0.91919 0.96455 1.21314 0.99694 1.10872 1.25718 0.93337 1.25633 0.95070 1.00213 0.96870 1.70028 1.07822 1.40965 1.36049 0.85619 0.78020 0.79570 0.78833 1.20193 1.19771 1.20411 1.21936 0.96016 0.96640 0.85409 0.93838 0.91304 0.93561 0.90276 0.91726 0.93849 0.91577 0.94071 0.93276 0.84613 0.90098 0.88593 0.90656 0.91093 0.93736 0.92682 0.94231 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.19 71.98 0.66 -2.22 16 2 C -0.09 -1.82 2.92 -10.80 -0.03 -1.85 16 3 C -0.14 -2.34 9.01 71.98 0.65 -1.69 16 4 C -0.07 -1.81 3.22 30.60 0.10 -1.71 16 5 C -0.11 -2.34 5.52 -10.79 -0.06 -2.40 16 6 H 0.14 2.16 6.38 -2.39 -0.02 2.14 16 7 C -0.14 -2.82 9.88 30.60 0.30 -2.52 16 8 C -0.20 -4.96 5.26 -11.54 -0.06 -5.03 16 9 H 0.14 2.90 7.78 -2.39 -0.02 2.88 16 10 C 0.54 19.66 7.61 87.66 0.67 20.33 16 11 O -0.58 -24.93 13.43 -3.02 -0.04 -24.97 16 12 N -0.61 -23.74 3.33 -811.38 -2.70 -26.44 16 13 C 0.10 3.52 6.48 86.93 0.56 4.08 16 14 C -0.10 -4.32 5.86 32.06 0.19 -4.13 16 15 C 0.04 1.89 2.82 -10.36 -0.03 1.86 16 16 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 17 C -0.54 -29.52 8.49 25.60 0.22 -29.30 16 18 H 0.05 2.69 7.55 -2.91 -0.02 2.67 16 19 C 0.02 1.21 5.35 84.66 0.45 1.66 16 20 N -0.91 -50.42 12.29 21.45 0.26 -50.16 16 21 Si 0.95 43.01 29.54 68.60 2.03 45.03 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 C 0.12 5.60 6.46 86.73 0.56 6.16 16 26 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.07 0.92 6.41 -2.39 -0.02 0.90 16 33 H 0.04 1.27 7.30 -2.39 -0.02 1.25 16 34 H 0.05 1.57 6.92 -2.38 -0.02 1.55 16 35 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.97 8.03 -2.39 -0.02 1.95 16 37 H 0.10 2.59 7.67 -2.39 -0.02 2.58 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 3.23 7.65 -2.39 -0.02 3.21 16 40 H 0.04 2.03 8.04 -2.39 -0.02 2.01 16 41 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 42 H 0.04 1.93 7.64 -2.39 -0.02 1.91 16 43 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -63.52 339.06 4.69 -58.83 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.96 Total: 14.44 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.18 Total: -16.74 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -2.44 Total: -76.60 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.04 Total: -24.97 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.52 4.69 -58.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397584742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.382 kcal (2) G-P(sol) polarization free energy of solvation -63.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds