Wall clock time and date at job start Mon Mar 30 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 H 1.09005 * 115.54764 * 29.32853 * 5 4 2 7 7 C 1.52994 * 117.49834 * 243.62325 * 5 4 2 8 8 C 1.52992 * 117.50015 * 174.99742 * 5 4 2 9 9 H 1.09003 * 117.50175 * 0.02562 * 8 5 4 10 10 C 1.50705 * 117.50104 * 214.97900 * 8 5 4 11 11 O 1.21281 * 119.99264 * 0.02562 * 10 8 5 12 12 N 1.34770 * 120.00166 * 179.97438 * 10 8 5 13 13 C 1.47424 * 125.65165 * 0.02763 * 12 10 8 14 14 C 1.54908 * 104.83635 * 204.09231 * 13 12 10 15 15 C 1.55156 * 101.57852 * 322.98912 * 14 13 12 16 16 H 1.09002 * 110.71933 * 277.13763 * 15 14 13 17 17 C 1.50695 * 110.72108 * 154.04182 * 15 14 13 18 18 H 1.07999 * 120.00508 * 241.45272 * 17 15 14 19 19 C 1.37877 * 119.99744 * 61.45545 * 17 15 14 20 20 N 1.31514 * 120.00463 * 359.97438 * 19 17 15 21 21 Si 1.86811 * 119.99957 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47041 * 59.99449 * 21 19 17 23 23 H 1.48501 * 109.47173 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46654 * 299.99553 * 21 19 17 25 25 C 1.47025 * 125.64723 * 179.71698 * 12 10 8 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 34 34 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 35 35 H 1.08999 * 117.50291 * 359.97438 * 7 5 4 36 36 H 1.09002 * 117.49901 * 145.02404 * 7 5 4 37 37 H 1.09002 * 110.36626 * 322.92955 * 13 12 10 38 38 H 1.08994 * 110.36694 * 85.24825 * 13 12 10 39 39 H 1.08997 * 111.00534 * 81.05975 * 14 13 12 40 40 H 1.08991 * 111.00597 * 204.87820 * 14 13 12 41 41 H 0.96991 * 120.00269 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.88267 * 298.39715 * 25 12 10 43 43 H 1.09006 * 109.88041 * 59.56027 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8309 -1.1881 6 1 3.9928 -0.8803 -0.1868 7 6 4.3694 -0.1011 -2.2655 8 6 4.2607 -1.6270 -2.2938 9 1 3.6323 -2.0723 -3.0652 10 6 5.4858 -2.4190 -1.9155 11 8 5.8842 -2.4092 -0.7700 12 7 6.1379 -3.1390 -2.8497 13 6 5.7642 -3.2400 -4.2722 14 6 6.3742 -4.5820 -4.7482 15 6 7.7130 -4.6109 -3.9645 16 1 8.4750 -4.0274 -4.4813 17 6 8.1793 -6.0289 -3.7577 18 1 8.2912 -6.4202 -2.7573 19 6 8.4631 -6.8269 -4.8457 20 7 8.3264 -6.3507 -6.0640 21 14 9.0404 -8.5849 -4.5894 22 1 8.0011 -9.3442 -3.8489 23 1 9.2758 -9.2259 -5.9081 24 1 10.3029 -8.5822 -3.8074 25 6 7.3435 -3.9485 -2.6204 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6054 -1.7198 -1.2952 34 1 1.7516 -0.1583 -2.1370 35 1 3.8125 0.4568 -3.0182 36 1 5.3270 0.3298 -1.9732 37 1 4.6796 -3.2572 -4.3792 38 1 6.1886 -2.4093 -4.8359 39 1 5.7387 -5.4217 -4.4669 40 1 6.5506 -4.5714 -5.8237 41 1 8.5264 -6.9120 -6.8293 42 1 8.1600 -3.3102 -2.2826 43 1 7.1380 -4.7167 -1.8748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397584743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:23 Heat of formation + Delta-G solvation = -39.380276 kcal Electronic energy + Delta-G solvation = -20071.224844 eV Core-core repulsion = 17115.958080 eV Total energy + Delta-G solvation = -2955.266764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78886 -37.90417 -36.55911 -34.90793 -33.01870 -30.34437 -28.45957 -27.70611 -27.32259 -25.41755 -23.49045 -21.89657 -21.09606 -20.15455 -19.62457 -18.48048 -17.04653 -16.35215 -15.49493 -15.21186 -15.12132 -14.57330 -14.28299 -14.05333 -13.68842 -13.10694 -12.90633 -12.58364 -12.55324 -12.41755 -12.12915 -11.86634 -11.61293 -11.28774 -11.26229 -11.23060 -11.05139 -11.00817 -10.80881 -10.79382 -10.50643 -10.16611 -9.97782 -9.76509 -9.50878 -9.26840 -8.98005 -8.48917 -7.95941 -6.11238 -4.14605 2.89227 3.29009 3.33284 3.36205 3.51310 3.95004 4.37978 4.50323 4.69442 4.75552 4.93009 4.93725 5.05661 5.22207 5.25985 5.38537 5.47058 5.53188 5.54774 5.63200 5.65525 5.69245 5.74292 5.88161 5.89197 5.97552 6.02516 6.08307 6.13720 6.18828 6.26061 6.32706 6.35105 6.65600 6.86111 7.02590 7.13123 7.47946 7.69900 7.87838 8.17413 8.27979 8.68181 8.86627 9.50204 10.98410 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042804 B = 0.003335 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.982466 B = 8393.712678 C = 8413.274674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.085 4.085 5 C -0.117 4.117 6 H 0.116 0.884 7 C -0.149 4.149 8 C -0.182 4.182 9 H 0.120 0.880 10 C 0.548 3.452 11 O -0.558 6.558 12 N -0.606 5.606 13 C 0.093 3.907 14 C -0.108 4.108 15 C 0.044 3.956 16 H 0.039 0.961 17 C -0.516 4.516 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.111 3.889 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.262 0.738 42 H 0.048 0.952 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 12.800 5.059 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.122 4.122 5 C -0.136 4.136 6 H 0.134 0.866 7 C -0.187 4.187 8 C -0.203 4.203 9 H 0.138 0.862 10 C 0.337 3.663 11 O -0.438 6.438 12 N -0.337 5.337 13 C -0.030 4.030 14 C -0.146 4.146 15 C 0.025 3.975 16 H 0.057 0.943 17 C -0.554 4.554 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.011 4.011 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.030 12.781 5.509 19.065 hybrid contribution 0.351 -1.074 -0.157 1.141 sum -12.679 11.707 5.352 18.068 Atomic orbital electron populations 1.21846 0.95397 1.01677 1.01578 1.21108 0.95333 0.96551 0.98363 1.21845 1.01598 0.95692 1.01234 1.21281 0.92334 1.00614 0.97989 1.22386 0.94008 1.01608 0.95588 0.86618 1.23047 1.02392 0.91545 1.01671 1.22296 0.99181 0.94586 1.04268 0.86242 1.19236 0.83581 0.79206 0.84323 1.90639 1.68423 1.65193 1.19574 1.48645 1.28920 1.46567 1.09582 1.22568 0.98868 1.00631 0.80915 1.22740 0.98049 0.92172 1.01677 1.19708 0.93286 0.95821 0.88682 0.94333 1.20992 1.45369 0.96148 0.92880 0.92327 1.24945 0.95128 0.98499 0.95137 1.69925 1.48497 1.36605 0.97690 0.86612 0.79375 0.84504 0.77272 1.20212 1.21261 1.20169 1.22341 0.84593 0.92823 1.01339 0.92717 0.92820 0.92790 0.91034 0.93143 0.92168 0.92901 0.91413 0.91659 0.88131 0.88551 0.92254 0.92298 0.92248 0.89715 0.92824 0.93372 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.76 16 2 C -0.10 -0.83 2.88 -90.62 -0.26 -1.09 16 3 C -0.15 -1.20 9.01 37.16 0.33 -0.86 16 4 C -0.08 -0.81 4.96 -26.73 -0.13 -0.95 16 5 C -0.12 -1.42 4.24 -90.63 -0.38 -1.81 16 6 H 0.12 1.62 7.60 -51.93 -0.39 1.22 16 7 C -0.15 -1.74 9.88 -26.73 -0.26 -2.00 16 8 C -0.18 -2.58 5.25 -91.77 -0.48 -3.06 16 9 H 0.12 1.52 7.07 -51.93 -0.37 1.15 16 10 C 0.55 10.43 7.63 -10.99 -0.08 10.35 16 11 O -0.56 -12.40 16.58 5.56 0.09 -12.31 16 12 N -0.61 -12.00 3.33 -170.51 -0.57 -12.57 16 13 C 0.09 1.65 6.69 -2.53 -0.02 1.64 16 14 C -0.11 -2.34 5.75 -24.58 -0.14 -2.48 16 15 C 0.04 1.06 2.85 -89.93 -0.26 0.81 16 16 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.52 -13.78 8.51 -34.44 -0.29 -14.07 16 18 H 0.06 1.57 7.58 -52.49 -0.40 1.17 16 19 C 0.07 1.74 5.33 -17.82 -0.10 1.65 16 20 N -0.89 -24.36 12.11 55.43 0.67 -23.69 16 21 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.11 2.46 6.47 -3.06 -0.02 2.44 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.54 7.38 -51.93 -0.38 0.15 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.56 7.87 -51.93 -0.41 0.16 16 35 H 0.10 0.94 8.03 -51.93 -0.42 0.53 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.90 7.01 -51.93 -0.36 0.54 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.35 8.04 -51.93 -0.42 0.94 16 40 H 0.08 1.93 7.53 -51.93 -0.39 1.54 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.43 7.67 -51.93 -0.40 1.03 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -29.05 345.19 -9.10 -38.15 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.72 Total: -0.40 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.75 Total: -10.20 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.10 Total: -36.25 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.05 -9.10 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397584743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.227 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds