Wall clock time and date at job start Mon Mar 30 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 H 1.09005 * 115.54764 * 29.32853 * 5 4 2 7 7 C 1.52994 * 117.49834 * 243.62325 * 5 4 2 8 8 C 1.52992 * 117.50015 * 174.99742 * 5 4 2 9 9 H 1.09003 * 117.50175 * 0.02562 * 8 5 4 10 10 C 1.50705 * 117.50104 * 214.97900 * 8 5 4 11 11 O 1.21281 * 119.99264 * 0.02562 * 10 8 5 12 12 N 1.34770 * 120.00166 * 179.97438 * 10 8 5 13 13 C 1.47424 * 125.65165 * 0.02763 * 12 10 8 14 14 C 1.54908 * 104.83635 * 204.09231 * 13 12 10 15 15 C 1.55156 * 101.57852 * 322.98912 * 14 13 12 16 16 H 1.09002 * 110.71933 * 277.13763 * 15 14 13 17 17 C 1.50695 * 110.72108 * 154.04182 * 15 14 13 18 18 H 1.07999 * 120.00508 * 241.45272 * 17 15 14 19 19 C 1.37877 * 119.99744 * 61.45545 * 17 15 14 20 20 N 1.31514 * 120.00463 * 359.97438 * 19 17 15 21 21 Si 1.86811 * 119.99957 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47041 * 59.99449 * 21 19 17 23 23 H 1.48501 * 109.47173 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46654 * 299.99553 * 21 19 17 25 25 C 1.47025 * 125.64723 * 179.71698 * 12 10 8 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 34 34 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 35 35 H 1.08999 * 117.50291 * 359.97438 * 7 5 4 36 36 H 1.09002 * 117.49901 * 145.02404 * 7 5 4 37 37 H 1.09002 * 110.36626 * 322.92955 * 13 12 10 38 38 H 1.08994 * 110.36694 * 85.24825 * 13 12 10 39 39 H 1.08997 * 111.00534 * 81.05975 * 14 13 12 40 40 H 1.08991 * 111.00597 * 204.87820 * 14 13 12 41 41 H 0.96991 * 120.00269 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.88267 * 298.39715 * 25 12 10 43 43 H 1.09006 * 109.88041 * 59.56027 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8309 -1.1881 6 1 3.9928 -0.8803 -0.1868 7 6 4.3694 -0.1011 -2.2655 8 6 4.2607 -1.6270 -2.2938 9 1 3.6323 -2.0723 -3.0652 10 6 5.4858 -2.4190 -1.9155 11 8 5.8842 -2.4092 -0.7700 12 7 6.1379 -3.1390 -2.8497 13 6 5.7642 -3.2400 -4.2722 14 6 6.3742 -4.5820 -4.7482 15 6 7.7130 -4.6109 -3.9645 16 1 8.4750 -4.0274 -4.4813 17 6 8.1793 -6.0289 -3.7577 18 1 8.2912 -6.4202 -2.7573 19 6 8.4631 -6.8269 -4.8457 20 7 8.3264 -6.3507 -6.0640 21 14 9.0404 -8.5849 -4.5894 22 1 8.0011 -9.3442 -3.8489 23 1 9.2758 -9.2259 -5.9081 24 1 10.3029 -8.5822 -3.8074 25 6 7.3435 -3.9485 -2.6204 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6054 -1.7198 -1.2952 34 1 1.7516 -0.1583 -2.1370 35 1 3.8125 0.4568 -3.0182 36 1 5.3270 0.3298 -1.9732 37 1 4.6796 -3.2572 -4.3792 38 1 6.1886 -2.4093 -4.8359 39 1 5.7387 -5.4217 -4.4669 40 1 6.5506 -4.5714 -5.8237 41 1 8.5264 -6.9120 -6.8293 42 1 8.1600 -3.3102 -2.2826 43 1 7.1380 -4.7167 -1.8748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397584743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:23 Heat of formation + Delta-G solvation = -53.956280 kcal Electronic energy + Delta-G solvation = -20071.856907 eV Core-core repulsion = 17115.958080 eV Total energy + Delta-G solvation = -2955.898827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21238 -39.14638 -37.99309 -35.80280 -34.97478 -32.15869 -30.14306 -28.59178 -27.92433 -27.16008 -25.01907 -23.33163 -22.06984 -21.43622 -20.87991 -19.91026 -18.75620 -18.01863 -16.93761 -16.64317 -16.52408 -15.99740 -15.34333 -15.16700 -14.77471 -14.46930 -14.29469 -14.17542 -13.84837 -13.34523 -13.12701 -13.08827 -12.96797 -12.91244 -12.77228 -12.67537 -12.36424 -12.31188 -12.08412 -11.79116 -11.61837 -11.46853 -11.39719 -11.09252 -10.98154 -10.94113 -10.71737 -10.51848 -9.60031 -8.17334 -6.27052 1.42932 1.43073 1.49029 1.51036 2.04030 2.42691 2.88019 3.14131 3.47598 3.73661 3.84481 4.03968 4.08562 4.14057 4.19863 4.25749 4.34155 4.43954 4.47249 4.60545 4.70449 4.77120 4.77785 4.86339 4.88376 4.90113 4.98643 5.03711 5.10317 5.12619 5.23253 5.25606 5.34061 5.36026 5.43208 5.52097 5.57503 5.58248 5.76382 5.85551 6.26009 6.64141 6.77873 7.15544 7.40356 8.91370 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042804 B = 0.003335 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.982466 B = 8393.712678 C = 8413.274674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.111 4.111 6 H 0.090 0.910 7 C -0.129 4.129 8 C -0.195 4.195 9 H 0.143 0.857 10 C 0.542 3.458 11 O -0.599 6.599 12 N -0.611 5.611 13 C 0.105 3.895 14 C -0.099 4.099 15 C 0.039 3.961 16 H 0.017 0.983 17 C -0.539 4.539 18 H 0.048 0.952 19 C 0.023 3.977 20 N -0.909 5.909 21 Si 0.954 3.046 22 H -0.274 1.274 23 H -0.279 1.279 24 H -0.274 1.274 25 C 0.120 3.880 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.265 0.735 42 H 0.042 0.958 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 13.856 4.257 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.116 4.116 5 C -0.130 4.130 6 H 0.108 0.892 7 C -0.166 4.166 8 C -0.215 4.215 9 H 0.161 0.839 10 C 0.333 3.667 11 O -0.482 6.482 12 N -0.342 5.342 13 C -0.017 4.017 14 C -0.138 4.138 15 C 0.020 3.980 16 H 0.036 0.964 17 C -0.578 4.578 18 H 0.067 0.933 19 C -0.177 4.177 20 N -0.548 5.548 21 Si 0.779 3.221 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.200 1.200 25 C -0.003 4.003 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.154 0.846 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.016 13.849 4.697 20.960 hybrid contribution 1.010 -1.383 0.147 1.718 sum -14.006 12.466 4.844 19.366 Atomic orbital electron populations 1.21817 0.94216 1.01874 1.02300 1.21104 0.96286 0.96647 0.97441 1.21830 1.00861 0.95452 1.02062 1.21285 0.90067 1.01051 0.99182 1.22401 0.95684 1.00742 0.94143 0.89168 1.23189 1.02124 0.89581 1.01741 1.22296 0.97443 0.95575 1.06231 0.83911 1.20164 0.84417 0.78688 0.83455 1.90615 1.69806 1.66473 1.21297 1.48725 1.28200 1.46526 1.10761 1.22561 1.00952 0.98647 0.79510 1.22509 0.96611 0.94132 1.00551 1.19622 0.94052 0.94490 0.89829 0.96446 1.21274 1.46143 0.97681 0.92669 0.93325 1.25621 0.95155 1.02026 0.94902 1.70010 1.48819 1.37791 0.98145 0.85682 0.78851 0.80150 0.77397 1.19896 1.20456 1.19966 1.21995 0.85939 0.92585 0.99756 0.92806 0.92355 0.91841 0.92490 0.92670 0.93278 0.91780 0.91524 0.89652 0.84646 0.89690 0.88531 0.90424 0.93782 0.90853 0.92644 0.93932 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.10 -1.49 2.88 -10.79 -0.03 -1.52 16 3 C -0.14 -2.05 9.01 71.98 0.65 -1.40 16 4 C -0.08 -1.29 4.96 30.59 0.15 -1.14 16 5 C -0.11 -2.49 4.24 -10.80 -0.05 -2.53 16 6 H 0.09 2.52 7.60 -2.38 -0.02 2.50 16 7 C -0.13 -2.62 9.88 30.59 0.30 -2.32 16 8 C -0.19 -5.03 5.25 -11.54 -0.06 -5.10 16 9 H 0.14 3.04 7.07 -2.39 -0.02 3.02 16 10 C 0.54 20.32 7.63 87.66 0.67 20.99 16 11 O -0.60 -27.15 16.58 -3.03 -0.05 -27.20 16 12 N -0.61 -23.92 3.33 -811.77 -2.70 -26.62 16 13 C 0.10 3.53 6.69 86.85 0.58 4.12 16 14 C -0.10 -4.31 5.75 31.99 0.18 -4.13 16 15 C 0.04 1.94 2.85 -10.35 -0.03 1.91 16 16 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 17 C -0.54 -29.57 8.51 25.60 0.22 -29.36 16 18 H 0.05 2.69 7.58 -2.91 -0.02 2.66 16 19 C 0.02 1.25 5.33 84.65 0.45 1.71 16 20 N -0.91 -50.14 12.11 21.45 0.26 -49.88 16 21 Si 0.95 42.91 29.54 68.60 2.03 44.93 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.12 5.51 6.47 86.73 0.56 6.07 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.80 7.38 -2.39 -0.02 0.78 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 1.09 7.87 -2.39 -0.02 1.08 16 35 H 0.14 1.86 8.03 -2.39 -0.02 1.84 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.10 2.58 7.01 -2.39 -0.02 2.56 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 40 H 0.07 3.34 7.53 -2.39 -0.02 3.32 16 41 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 2.00 7.67 -2.38 -0.02 1.98 16 Total: -1.00 -64.18 345.19 4.75 -59.43 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.95 Total: 13.19 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 4.26 Total: -13.86 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -2.44 Total: -76.50 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.05 Total: -27.20 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -64.18 4.75 -59.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397584743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.473 kcal (2) G-P(sol) polarization free energy of solvation -64.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds