Wall clock time and date at job start Mon Mar 30 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.50707 * 110.01326 * 63.43874 * 3 2 1 5 5 O 1.21279 * 119.99622 * 244.65660 * 4 3 2 6 6 N 1.34774 * 120.00206 * 64.66430 * 4 3 2 7 7 C 1.47431 * 125.64668 * 354.36293 * 6 4 3 8 8 C 1.55126 * 104.72171 * 155.82242 * 7 6 4 9 9 C 1.55157 * 101.48921 * 37.28811 * 8 7 6 10 10 H 1.09007 * 110.86735 * 82.76948 * 9 8 7 11 11 C 1.50698 * 110.72024 * 205.97263 * 9 8 7 12 12 H 1.07995 * 120.00464 * 113.52470 * 11 9 8 13 13 C 1.37885 * 119.99917 * 293.52356 * 11 9 8 14 14 N 1.31513 * 120.00091 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00050 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46935 * 59.99783 * 15 13 11 17 17 H 1.48498 * 109.47348 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46905 * 300.00173 * 15 13 11 19 19 C 1.47015 * 125.65099 * 174.66956 * 6 4 3 20 20 C 1.54264 * 110.03257 * 301.99911 * 3 2 1 21 21 C 1.54893 * 104.19559 * 217.10529 * 20 3 2 22 22 C 1.54897 * 102.74920 * 37.93815 * 21 20 3 23 23 C 1.53875 * 110.03122 * 184.82895 * 3 2 1 24 24 H 1.08999 * 109.46795 * 55.02447 * 1 2 3 25 25 H 1.09006 * 109.47198 * 295.02573 * 1 2 3 26 26 H 1.08999 * 109.47366 * 175.03011 * 1 2 3 27 27 H 1.09005 * 109.46844 * 120.00137 * 2 1 3 28 28 H 1.08996 * 109.46978 * 239.99951 * 2 1 3 29 29 H 1.09008 * 110.36135 * 274.74748 * 7 6 4 30 30 H 1.08995 * 110.36805 * 37.06360 * 7 6 4 31 31 H 1.09004 * 111.18970 * 279.18605 * 8 7 6 32 32 H 1.08998 * 110.94082 * 155.28798 * 8 7 6 33 33 H 0.96996 * 120.00451 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.88580 * 300.43982 * 19 6 4 35 35 H 1.08999 * 109.88311 * 61.44836 * 19 6 4 36 36 H 1.09001 * 110.48385 * 335.78348 * 20 3 2 37 37 H 1.09004 * 110.48773 * 98.42721 * 20 3 2 38 38 H 1.08998 * 110.75385 * 279.63129 * 21 20 3 39 39 H 1.08992 * 110.91749 * 156.32873 * 21 20 3 40 40 H 1.08992 * 110.48647 * 203.38238 * 22 21 20 41 41 H 1.09003 * 110.48086 * 80.73656 * 22 21 20 42 42 H 1.09002 * 110.03010 * 238.56808 * 23 3 2 43 43 H 1.08992 * 110.03564 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6150 2.1398 1.2666 5 8 0.8492 3.0788 1.2141 6 7 2.0860 1.7202 2.4576 7 6 2.9240 0.5274 2.6782 8 6 3.6842 0.8185 3.9987 9 6 2.5977 1.5569 4.8244 10 1 1.9287 0.8460 5.3094 11 6 3.2307 2.4704 5.8422 12 1 3.1177 3.5406 5.7515 13 6 3.9541 1.9398 6.8893 14 7 4.0921 0.6366 6.9995 15 14 4.7381 3.0721 8.1513 16 1 3.6829 3.8781 8.8162 17 1 5.4553 2.2601 9.1669 18 1 5.6998 3.9782 7.4735 19 6 1.8440 2.3723 3.7528 20 6 1.4921 2.1967 -1.2291 21 6 2.6615 3.1147 -1.6639 22 6 3.9046 2.2231 -1.4205 23 6 3.5739 1.4592 -0.1217 24 1 -0.3633 0.5891 -0.8421 25 1 -0.3634 0.4347 0.9312 26 1 -0.3634 -1.0238 -0.0890 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 2.3001 -0.3601 2.7845 30 1 3.6279 0.4009 1.8556 31 1 4.5463 1.4620 3.8235 32 1 3.9841 -0.1083 4.4879 33 1 4.6007 0.2633 7.7362 34 1 2.2230 3.3941 3.7299 35 1 0.7761 2.3781 3.9711 36 1 1.2405 1.4963 -2.0255 37 1 0.6215 2.7923 -0.9544 38 1 2.7010 4.0100 -1.0435 39 1 2.5768 3.3801 -2.7176 40 1 4.7944 2.8378 -1.2855 41 1 4.0425 1.5270 -2.2479 42 1 4.0108 1.9725 0.7349 43 1 3.9549 0.4398 -0.1812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397657308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:47 Heat of formation + Delta-G solvation = -59.878015 kcal Electronic energy + Delta-G solvation = -21532.321952 eV Core-core repulsion = 18576.166340 eV Total energy + Delta-G solvation = -2956.155612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46444 -37.59119 -36.38767 -33.37305 -32.84136 -30.41223 -28.94438 -28.17200 -27.72918 -24.94264 -22.97134 -22.69988 -20.82623 -20.43998 -19.55818 -18.19843 -16.62473 -16.26753 -15.57512 -15.16843 -15.02169 -14.58613 -14.50692 -13.64429 -13.47229 -13.23147 -12.78314 -12.58913 -12.54842 -12.12666 -11.91355 -11.48735 -11.40394 -11.24949 -11.08716 -11.01243 -10.95726 -10.88843 -10.78027 -10.58511 -10.50968 -10.46411 -10.33465 -9.78039 -9.48043 -9.08592 -8.98630 -8.48341 -7.93149 -6.11237 -4.14290 3.12931 3.28782 3.33248 3.36289 3.61420 4.38344 4.48714 4.64737 4.71051 5.11138 5.15268 5.21161 5.24906 5.34174 5.49428 5.57491 5.62514 5.70622 5.72025 5.78984 5.90392 5.92537 5.94152 5.98045 6.01039 6.05724 6.18556 6.25469 6.29163 6.30591 6.33999 6.37330 6.47995 6.66657 6.87847 7.00367 7.13230 7.44645 7.69961 7.87649 8.21137 8.28664 8.71272 8.87487 9.50461 10.98741 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029404 B = 0.005070 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.023198 B = 5520.983815 C = 5684.213067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.077 4.077 4 C 0.535 3.465 5 O -0.556 6.556 6 N -0.608 5.608 7 C 0.085 3.915 8 C -0.110 4.110 9 C 0.044 3.956 10 H 0.042 0.958 11 C -0.515 4.515 12 H 0.058 0.942 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.111 3.889 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.117 4.117 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.262 0.738 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -2.794 -15.386 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.080 4.080 4 C 0.323 3.677 5 O -0.435 6.435 6 N -0.340 5.340 7 C -0.037 4.037 8 C -0.149 4.149 9 C 0.025 3.975 10 H 0.060 0.940 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.011 4.011 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.155 4.155 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.478 -2.417 -15.341 15.600 hybrid contribution 0.529 0.454 0.867 1.113 sum -0.949 -1.963 -14.474 14.637 Atomic orbital electron populations 1.21810 0.95510 1.01375 1.02428 1.21740 0.96493 0.94068 1.02885 1.21391 0.96484 0.96239 0.93875 1.20006 0.80197 0.83629 0.83842 1.90613 1.36056 1.30135 1.86669 1.48628 1.50660 1.27807 1.06858 1.22797 0.93420 0.87306 1.00201 1.22806 0.98523 1.01728 0.91826 1.19704 0.92654 0.94184 0.90911 0.94033 1.20999 1.32745 0.92786 1.08815 0.92388 1.24944 0.96103 0.95051 0.97550 1.69927 1.40785 1.10381 1.31609 0.86631 0.79526 0.80658 0.81062 1.20173 1.21262 1.20230 1.22316 0.99273 0.97522 0.81940 1.22366 0.99147 0.97894 0.94966 1.22491 0.94602 0.98467 1.00683 1.22364 0.98151 0.98344 0.97169 1.22343 0.93250 1.01139 0.98736 0.92337 0.92675 0.92721 0.90797 0.91184 0.92383 0.91463 0.92230 0.90138 0.92832 0.92319 0.93457 0.91308 0.89732 0.91393 0.91715 0.91685 0.91675 0.90798 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.45 37.16 0.35 -1.54 16 2 C -0.11 -1.39 4.47 -26.73 -0.12 -1.51 16 3 C -0.08 -1.07 0.37 -154.54 -0.06 -1.13 16 4 C 0.54 9.88 5.45 -10.98 -0.06 9.82 16 5 O -0.56 -12.04 15.71 5.56 0.09 -11.95 16 6 N -0.61 -11.70 3.18 -170.38 -0.54 -12.24 16 7 C 0.09 1.48 4.90 -2.41 -0.01 1.47 16 8 C -0.11 -2.35 5.96 -24.46 -0.15 -2.49 16 9 C 0.04 1.06 2.78 -89.94 -0.25 0.81 16 10 H 0.04 1.07 8.14 -51.92 -0.42 0.65 16 11 C -0.52 -13.68 8.47 -34.44 -0.29 -13.97 16 12 H 0.06 1.54 7.53 -52.49 -0.40 1.15 16 13 C 0.07 1.76 5.36 -17.82 -0.10 1.66 16 14 N -0.89 -24.37 12.50 55.43 0.69 -23.67 16 15 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.11 2.45 6.46 -3.07 -0.02 2.43 16 20 C -0.11 -1.36 4.53 -25.07 -0.11 -1.48 16 21 C -0.12 -1.48 6.91 -24.73 -0.17 -1.66 16 22 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 23 C -0.12 -1.48 4.24 -25.61 -0.11 -1.59 16 24 H 0.06 0.68 6.80 -51.93 -0.35 0.33 16 25 H 0.05 0.81 7.53 -51.93 -0.39 0.42 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.93 5.28 -51.93 -0.27 0.66 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.96 7.31 -51.92 -0.38 0.58 16 30 H 0.07 1.00 4.91 -51.93 -0.25 0.75 16 31 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 32 H 0.08 1.80 7.77 -51.93 -0.40 1.40 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 34 H 0.06 1.36 7.63 -51.93 -0.40 0.97 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 37 H 0.08 1.27 6.77 -51.93 -0.35 0.92 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.09 6.75 -51.93 -0.35 0.74 16 43 H 0.07 0.80 7.32 -51.93 -0.38 0.42 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -28.70 323.02 -8.43 -37.13 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.26 Total: 0.81 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.26 Total: -10.69 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.15 Total: -35.92 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.70 -8.43 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397657308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.748 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds