Wall clock time and date at job start Mon Mar 30 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.50707 * 110.01326 * 63.43874 * 3 2 1 5 5 O 1.21279 * 119.99622 * 244.65660 * 4 3 2 6 6 N 1.34774 * 120.00206 * 64.66430 * 4 3 2 7 7 C 1.47431 * 125.64668 * 354.36293 * 6 4 3 8 8 C 1.55126 * 104.72171 * 155.82242 * 7 6 4 9 9 C 1.55157 * 101.48921 * 37.28811 * 8 7 6 10 10 H 1.09007 * 110.86735 * 82.76948 * 9 8 7 11 11 C 1.50698 * 110.72024 * 205.97263 * 9 8 7 12 12 H 1.07995 * 120.00464 * 113.52470 * 11 9 8 13 13 C 1.37885 * 119.99917 * 293.52356 * 11 9 8 14 14 N 1.31513 * 120.00091 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00050 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46935 * 59.99783 * 15 13 11 17 17 H 1.48498 * 109.47348 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46905 * 300.00173 * 15 13 11 19 19 C 1.47015 * 125.65099 * 174.66956 * 6 4 3 20 20 C 1.54264 * 110.03257 * 301.99911 * 3 2 1 21 21 C 1.54893 * 104.19559 * 217.10529 * 20 3 2 22 22 C 1.54897 * 102.74920 * 37.93815 * 21 20 3 23 23 C 1.53875 * 110.03122 * 184.82895 * 3 2 1 24 24 H 1.08999 * 109.46795 * 55.02447 * 1 2 3 25 25 H 1.09006 * 109.47198 * 295.02573 * 1 2 3 26 26 H 1.08999 * 109.47366 * 175.03011 * 1 2 3 27 27 H 1.09005 * 109.46844 * 120.00137 * 2 1 3 28 28 H 1.08996 * 109.46978 * 239.99951 * 2 1 3 29 29 H 1.09008 * 110.36135 * 274.74748 * 7 6 4 30 30 H 1.08995 * 110.36805 * 37.06360 * 7 6 4 31 31 H 1.09004 * 111.18970 * 279.18605 * 8 7 6 32 32 H 1.08998 * 110.94082 * 155.28798 * 8 7 6 33 33 H 0.96996 * 120.00451 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.88580 * 300.43982 * 19 6 4 35 35 H 1.08999 * 109.88311 * 61.44836 * 19 6 4 36 36 H 1.09001 * 110.48385 * 335.78348 * 20 3 2 37 37 H 1.09004 * 110.48773 * 98.42721 * 20 3 2 38 38 H 1.08998 * 110.75385 * 279.63129 * 21 20 3 39 39 H 1.08992 * 110.91749 * 156.32873 * 21 20 3 40 40 H 1.08992 * 110.48647 * 203.38238 * 22 21 20 41 41 H 1.09003 * 110.48086 * 80.73656 * 22 21 20 42 42 H 1.09002 * 110.03010 * 238.56808 * 23 3 2 43 43 H 1.08992 * 110.03564 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6150 2.1398 1.2666 5 8 0.8492 3.0788 1.2141 6 7 2.0860 1.7202 2.4576 7 6 2.9240 0.5274 2.6782 8 6 3.6842 0.8185 3.9987 9 6 2.5977 1.5569 4.8244 10 1 1.9287 0.8460 5.3094 11 6 3.2307 2.4704 5.8422 12 1 3.1177 3.5406 5.7515 13 6 3.9541 1.9398 6.8893 14 7 4.0921 0.6366 6.9995 15 14 4.7381 3.0721 8.1513 16 1 3.6829 3.8781 8.8162 17 1 5.4553 2.2601 9.1669 18 1 5.6998 3.9782 7.4735 19 6 1.8440 2.3723 3.7528 20 6 1.4921 2.1967 -1.2291 21 6 2.6615 3.1147 -1.6639 22 6 3.9046 2.2231 -1.4205 23 6 3.5739 1.4592 -0.1217 24 1 -0.3633 0.5891 -0.8421 25 1 -0.3634 0.4347 0.9312 26 1 -0.3634 -1.0238 -0.0890 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 2.3001 -0.3601 2.7845 30 1 3.6279 0.4009 1.8556 31 1 4.5463 1.4620 3.8235 32 1 3.9841 -0.1083 4.4879 33 1 4.6007 0.2633 7.7362 34 1 2.2230 3.3941 3.7299 35 1 0.7761 2.3781 3.9711 36 1 1.2405 1.4963 -2.0255 37 1 0.6215 2.7923 -0.9544 38 1 2.7010 4.0100 -1.0435 39 1 2.5768 3.3801 -2.7176 40 1 4.7944 2.8378 -1.2855 41 1 4.0425 1.5270 -2.2479 42 1 4.0108 1.9725 0.7349 43 1 3.9549 0.4398 -0.1812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397657308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:46 Heat of formation + Delta-G solvation = -75.339912 kcal Electronic energy + Delta-G solvation = -21532.992431 eV Core-core repulsion = 18576.166340 eV Total energy + Delta-G solvation = -2956.826090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79890 -39.03022 -37.90744 -35.03927 -34.10822 -32.14485 -30.33281 -29.52720 -28.82501 -26.81641 -24.48666 -23.74219 -22.16987 -21.49072 -21.32855 -19.62128 -18.56321 -17.58258 -16.95371 -16.64554 -16.54058 -16.17285 -15.54055 -15.08660 -14.84012 -14.48261 -14.23799 -14.11833 -13.81160 -13.56142 -13.14348 -13.10484 -12.94643 -12.93733 -12.69249 -12.35977 -12.30726 -12.14990 -11.99528 -11.89393 -11.56701 -11.52024 -11.45753 -11.36801 -11.35173 -10.96791 -10.55684 -10.51459 -9.56613 -8.17662 -6.26974 1.42512 1.42847 1.50739 1.67426 2.10931 2.42885 3.14158 3.43480 3.55224 3.69602 3.97569 4.06801 4.22611 4.24666 4.33834 4.38662 4.43567 4.45347 4.55319 4.60333 4.67782 4.72205 4.77230 4.82939 4.87580 4.99773 5.06720 5.07900 5.08914 5.19341 5.21179 5.25168 5.28832 5.32680 5.35931 5.46200 5.51211 5.55688 5.74843 5.84734 6.26286 6.69181 6.78399 7.20629 7.40386 8.91604 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029404 B = 0.005070 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.023198 B = 5520.983815 C = 5684.213067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.072 4.072 4 C 0.529 3.471 5 O -0.595 6.595 6 N -0.612 5.612 7 C 0.099 3.901 8 C -0.101 4.101 9 C 0.040 3.960 10 H 0.017 0.983 11 C -0.538 4.538 12 H 0.048 0.952 13 C 0.024 3.976 14 N -0.911 5.911 15 Si 0.953 3.047 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.273 1.273 19 C 0.121 3.879 20 C -0.104 4.104 21 C -0.127 4.127 22 C -0.115 4.115 23 C -0.119 4.119 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.264 0.736 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -4.190 -17.636 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.075 4.075 4 C 0.320 3.680 5 O -0.477 6.477 6 N -0.343 5.343 7 C -0.022 4.022 8 C -0.140 4.140 9 C 0.021 3.979 10 H 0.036 0.964 11 C -0.576 4.576 12 H 0.066 0.934 13 C -0.176 4.176 14 N -0.549 5.549 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.205 1.205 18 H -0.198 1.198 19 C -0.002 4.002 20 C -0.142 4.142 21 C -0.164 4.164 22 C -0.153 4.153 23 C -0.157 4.157 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.337 -3.824 -17.603 18.017 hybrid contribution 0.107 0.930 1.579 1.835 sum -0.231 -2.893 -16.025 16.285 Atomic orbital electron populations 1.21810 0.95995 1.02476 1.00763 1.21806 0.96052 0.92574 1.04515 1.21498 0.97725 0.97108 0.91202 1.21033 0.79066 0.83146 0.84769 1.90590 1.37799 1.32030 1.87278 1.48690 1.51192 1.28243 1.06217 1.22786 0.93506 0.86847 0.99104 1.22577 0.97571 1.00386 0.93423 1.19605 0.93187 0.93851 0.91236 0.96446 1.21270 1.33422 0.92770 1.10136 0.93381 1.25613 0.96446 0.96413 0.99128 1.70013 1.41173 1.11548 1.32167 0.85697 0.78652 0.78967 0.78857 1.20040 1.20456 1.19812 1.21954 0.98233 0.96523 0.83455 1.22389 0.98315 0.98257 0.95238 1.22502 0.94964 0.97423 1.01514 1.22364 0.97417 0.98422 0.97063 1.22398 0.91710 1.02778 0.98813 0.91817 0.96199 0.90586 0.91106 0.87448 0.90799 0.88054 0.93446 0.91216 0.92650 0.94268 0.94446 0.88150 0.92638 0.94396 0.89324 0.91504 0.88679 0.93399 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.45 71.98 0.68 -2.76 16 2 C -0.11 -2.32 4.47 30.59 0.14 -2.18 16 3 C -0.07 -1.86 0.37 -52.20 -0.02 -1.88 16 4 C 0.53 19.66 5.45 87.66 0.48 20.14 16 5 O -0.60 -26.78 15.71 -3.02 -0.05 -26.83 16 6 N -0.61 -23.85 3.18 -811.35 -2.58 -26.43 16 7 C 0.10 3.34 4.90 86.93 0.43 3.77 16 8 C -0.10 -4.35 5.96 32.06 0.19 -4.15 16 9 C 0.04 2.00 2.78 -10.35 -0.03 1.97 16 10 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 11 C -0.54 -29.49 8.47 25.60 0.22 -29.28 16 12 H 0.05 2.66 7.53 -2.91 -0.02 2.64 16 13 C 0.02 1.31 5.36 84.66 0.45 1.76 16 14 N -0.91 -50.46 12.50 21.45 0.27 -50.19 16 15 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 C 0.12 5.60 6.46 86.73 0.56 6.16 16 20 C -0.10 -2.46 4.53 31.67 0.14 -2.31 16 21 C -0.13 -2.73 6.91 31.89 0.22 -2.51 16 22 C -0.12 -2.10 6.83 31.67 0.22 -1.89 16 23 C -0.12 -2.65 4.24 31.32 0.13 -2.51 16 24 H 0.06 1.34 6.80 -2.39 -0.02 1.33 16 25 H 0.02 0.56 7.53 -2.38 -0.02 0.55 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.53 5.28 -2.38 -0.01 1.51 16 28 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 2.30 7.31 -2.38 -0.02 2.28 16 30 H 0.10 2.76 4.91 -2.39 -0.01 2.74 16 31 H 0.05 2.13 8.04 -2.38 -0.02 2.11 16 32 H 0.07 3.14 7.77 -2.39 -0.02 3.12 16 33 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.04 1.93 7.63 -2.38 -0.02 1.91 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.74 7.53 -2.39 -0.02 1.72 16 37 H 0.05 1.65 6.77 -2.38 -0.02 1.63 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.32 6.75 -2.39 -0.02 1.31 16 43 H 0.10 1.70 7.32 -2.39 -0.02 1.68 16 Total: -1.00 -64.92 323.02 4.45 -60.47 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.97 Total: 13.70 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.81 Total: -15.68 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -2.31 Total: -76.62 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -64.92 4.45 -60.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397657308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.871 kcal (2) G-P(sol) polarization free energy of solvation -64.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds