Wall clock time and date at job start Mon Mar 30 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47291 * 2 1 4 4 C 1.50699 * 109.47040 * 240.00063 * 2 1 3 5 5 O 1.21281 * 120.00001 * 244.59220 * 4 2 1 6 6 N 1.34774 * 120.00039 * 64.58928 * 4 2 1 7 7 C 1.47425 * 125.64949 * 184.57806 * 6 4 2 8 8 C 1.54909 * 104.83291 * 204.09380 * 7 6 4 9 9 C 1.55158 * 101.58263 * 322.99251 * 8 7 6 10 10 H 1.09004 * 110.71868 * 277.13791 * 9 8 7 11 11 C 1.50697 * 110.72139 * 153.86620 * 9 8 7 12 12 H 1.07996 * 119.99803 * 241.45035 * 11 9 8 13 13 C 1.37874 * 119.99892 * 61.45296 * 11 9 8 14 14 N 1.31513 * 120.00189 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 119.99829 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47216 * 90.00011 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99955 * 15 13 11 18 18 H 1.48500 * 109.47308 * 329.99723 * 15 13 11 19 19 C 1.47021 * 125.64796 * 4.27333 * 6 4 2 20 20 C 1.53000 * 109.46924 * 120.00361 * 2 1 3 21 21 C 1.53781 * 113.61249 * 297.23675 * 20 2 1 22 22 C 1.53778 * 87.17296 * 220.06262 * 21 20 2 23 23 C 1.53780 * 87.08073 * 25.39140 * 22 21 20 24 24 H 1.09001 * 109.47115 * 292.99773 * 1 2 3 25 25 H 1.08998 * 109.47334 * 53.00146 * 1 2 3 26 26 H 1.09002 * 109.47321 * 173.00179 * 1 2 3 27 27 H 1.08997 * 109.47434 * 197.15143 * 3 2 1 28 28 H 1.09002 * 109.47561 * 317.15454 * 3 2 1 29 29 H 1.08997 * 109.47139 * 77.14820 * 3 2 1 30 30 H 1.09000 * 110.36740 * 322.93609 * 7 6 4 31 31 H 1.09004 * 110.36619 * 85.14554 * 7 6 4 32 32 H 1.09005 * 111.00484 * 81.06878 * 8 7 6 33 33 H 1.09001 * 111.00250 * 204.91914 * 8 7 6 34 34 H 0.97006 * 119.99649 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.88387 * 298.39313 * 19 6 4 36 36 H 1.09000 * 109.88140 * 59.55867 * 19 6 4 37 37 H 1.08994 * 112.91077 * 68.49420 * 20 2 1 38 38 H 1.09003 * 113.61026 * 105.47555 * 21 20 2 39 39 H 1.08999 * 113.61622 * 334.65541 * 21 20 2 40 40 H 1.09001 * 113.61274 * 139.93839 * 22 21 20 41 41 H 1.08996 * 113.62102 * 270.84010 * 22 21 20 42 42 H 1.09007 * 113.61080 * 89.11752 * 23 22 21 43 43 H 1.08993 * 113.61405 * 219.92954 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6593 -1.7428 -1.1212 6 7 1.7847 -0.1985 -2.4524 7 6 2.1317 -0.8340 -3.7366 8 6 2.2282 0.3376 -4.7455 9 6 1.0828 1.2637 -4.2578 10 1 0.1240 0.9354 -4.6591 11 6 1.3581 2.6964 -4.6357 12 1 1.4670 3.4463 -3.8663 13 6 1.4709 3.0496 -5.9636 14 7 1.3387 2.1362 -6.9005 15 14 1.8128 4.8254 -6.4319 16 1 3.2797 5.0441 -6.5062 17 1 1.2016 5.1151 -7.7540 18 1 1.2288 5.7286 -5.4081 19 6 1.1182 1.0832 -2.7255 20 6 2.0400 -0.7213 1.2492 21 6 1.6373 -0.0343 2.5648 22 6 3.0480 -0.3643 3.0803 23 6 3.4968 -0.3781 1.6095 24 1 -0.3633 0.4015 0.9460 25 1 -0.3634 0.6184 -0.8207 26 1 -0.3634 -1.0200 -0.1252 27 1 3.0869 1.4577 -0.3030 28 1 1.4508 2.0362 -0.6988 29 1 1.9457 1.8612 1.0019 30 1 3.0900 -1.3477 -3.6590 31 1 1.3509 -1.5325 -4.0374 32 1 3.1937 0.8382 -4.6718 33 1 2.0453 -0.0072 -5.7632 34 1 1.4177 2.3849 -7.8349 35 1 0.1031 1.0651 -2.3288 36 1 1.6816 1.8982 -2.2710 37 1 1.8344 -1.7916 1.2348 38 1 0.8435 -0.5526 3.1028 39 1 1.4496 1.0343 2.4597 40 1 3.4973 0.4374 3.6664 41 1 3.1185 -1.3368 3.5675 42 1 3.8182 0.5965 1.2420 43 1 4.2055 -1.1728 1.3767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397663405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:22 Heat of formation + Delta-G solvation = -22.791915 kcal Electronic energy + Delta-G solvation = -21405.354087 eV Core-core repulsion = 18450.806649 eV Total energy + Delta-G solvation = -2954.547438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52421 -38.43411 -36.55830 -34.05229 -32.87112 -30.08219 -28.43636 -27.44006 -25.76402 -25.23437 -24.90991 -23.27710 -21.02340 -19.85877 -19.03280 -18.21511 -16.63119 -16.09202 -15.94558 -15.07997 -14.95744 -14.64339 -14.43453 -13.92318 -13.25283 -13.09312 -12.79791 -12.62562 -12.37742 -12.18934 -11.90393 -11.72371 -11.57228 -11.44434 -11.19904 -11.07059 -10.98960 -10.87545 -10.78677 -10.44311 -10.27296 -10.20868 -9.97964 -9.75809 -9.46655 -9.04669 -8.96307 -8.50722 -7.89807 -6.13149 -4.17506 3.14797 3.24735 3.32276 3.34012 3.62096 4.34575 4.58503 4.67647 4.74221 4.89857 5.02668 5.15528 5.20487 5.36081 5.41646 5.61473 5.70878 5.76722 5.77609 5.84623 5.85253 5.88211 5.94111 6.03400 6.07939 6.10168 6.15538 6.17451 6.26081 6.33362 6.36671 6.39878 6.61434 6.68104 6.86981 7.06019 7.14617 7.50045 7.67326 7.85644 8.20410 8.25689 8.71813 8.83492 9.47706 10.96362 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.004996 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.958795 B = 5603.392220 C = 6025.792626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 C -0.155 4.155 4 C 0.533 3.467 5 O -0.560 6.560 6 N -0.607 5.607 7 C 0.098 3.902 8 C -0.107 4.107 9 C 0.043 3.957 10 H 0.038 0.962 11 C -0.517 4.517 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.092 3.908 20 C -0.081 4.081 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.137 4.137 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.262 0.738 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 -2.466 14.360 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.212 4.212 4 C 0.321 3.679 5 O -0.439 6.439 6 N -0.339 5.339 7 C -0.024 4.024 8 C -0.145 4.145 9 C 0.024 3.976 10 H 0.056 0.944 11 C -0.555 4.555 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.030 4.030 20 C -0.100 4.100 21 C -0.175 4.175 22 C -0.180 4.180 23 C -0.174 4.174 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.089 -3.059 14.278 14.602 hybrid contribution 0.182 0.913 -0.488 1.051 sum 0.093 -2.146 13.790 13.956 Atomic orbital electron populations 1.21933 0.92847 1.02492 1.02873 1.20590 0.96949 0.96403 0.92978 1.22256 1.01914 0.94255 1.02783 1.20158 0.79447 0.84747 0.83563 1.90614 1.41644 1.25173 1.86501 1.48664 1.57982 1.22164 1.05128 1.22437 0.99259 0.97080 0.83656 1.22729 1.00489 0.93825 0.97481 1.19718 0.95224 0.95785 0.86868 0.94411 1.20993 1.49859 0.92651 0.92026 0.92314 1.24946 0.94849 0.97326 0.96531 1.69946 1.49264 1.32973 1.00241 0.86581 0.78461 0.84978 0.77919 1.20653 1.21204 1.19833 1.22820 0.95265 0.83913 1.00964 1.22356 0.96210 0.99758 0.91633 1.23050 0.96869 1.01031 0.96576 1.22784 0.97030 1.01390 0.96769 1.23022 0.96787 1.02224 0.95367 0.91657 0.91068 0.92611 0.92186 0.90399 0.91628 0.92124 0.92763 0.92381 0.89897 0.92848 0.92849 0.91124 0.88847 0.91796 0.89708 0.91780 0.90555 0.89855 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.20 37.16 0.30 -1.55 16 2 C -0.07 -0.95 0.41 -155.66 -0.06 -1.02 16 3 C -0.16 -2.08 6.31 37.15 0.23 -1.84 16 4 C 0.53 9.89 6.46 -10.99 -0.07 9.82 16 5 O -0.56 -11.94 16.09 5.56 0.09 -11.85 16 6 N -0.61 -11.73 3.32 -170.51 -0.57 -12.30 16 7 C 0.10 1.96 6.93 -2.53 -0.02 1.94 16 8 C -0.11 -2.38 5.75 -24.58 -0.14 -2.52 16 9 C 0.04 0.99 2.86 -89.93 -0.26 0.74 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.52 -13.14 8.50 -34.44 -0.29 -13.43 16 12 H 0.06 1.46 7.57 -52.49 -0.40 1.06 16 13 C 0.07 1.72 5.33 -17.82 -0.10 1.63 16 14 N -0.89 -24.07 12.11 55.43 0.67 -23.40 16 15 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.09 1.77 4.72 -3.06 -0.01 1.76 16 20 C -0.08 -1.06 2.46 -89.72 -0.22 -1.28 16 21 C -0.14 -1.42 6.43 -25.92 -0.17 -1.59 16 22 C -0.14 -1.45 8.08 -25.92 -0.21 -1.66 16 23 C -0.14 -1.73 7.31 -25.83 -0.19 -1.92 16 24 H 0.06 0.70 7.32 -51.93 -0.38 0.32 16 25 H 0.07 0.95 5.12 -51.93 -0.27 0.69 16 26 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 27 H 0.06 0.86 7.04 -51.93 -0.37 0.50 16 28 H 0.08 1.08 5.01 -51.93 -0.26 0.82 16 29 H 0.06 0.73 5.80 -51.93 -0.30 0.43 16 30 H 0.06 1.21 7.99 -51.93 -0.42 0.80 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 33 H 0.08 1.96 7.54 -51.93 -0.39 1.57 16 34 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.05 0.94 5.63 -51.93 -0.29 0.65 16 36 H 0.07 1.34 5.17 -51.93 -0.27 1.07 16 37 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.82 6.12 -51.93 -0.32 0.51 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.05 5.94 -51.93 -0.31 0.74 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -27.98 319.62 -8.10 -36.08 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.88 Total: 2.38 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -1.20 Total: -10.94 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.11 Total: -35.70 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.98 -8.10 -36.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397663405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.283 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds