Wall clock time and date at job start Mon Mar 30 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47291 * 2 1 4 4 C 1.50699 * 109.47040 * 240.00063 * 2 1 3 5 5 O 1.21281 * 120.00001 * 244.59220 * 4 2 1 6 6 N 1.34774 * 120.00039 * 64.58928 * 4 2 1 7 7 C 1.47425 * 125.64949 * 184.57806 * 6 4 2 8 8 C 1.54909 * 104.83291 * 204.09380 * 7 6 4 9 9 C 1.55158 * 101.58263 * 322.99251 * 8 7 6 10 10 H 1.09004 * 110.71868 * 277.13791 * 9 8 7 11 11 C 1.50697 * 110.72139 * 153.86620 * 9 8 7 12 12 H 1.07996 * 119.99803 * 241.45035 * 11 9 8 13 13 C 1.37874 * 119.99892 * 61.45296 * 11 9 8 14 14 N 1.31513 * 120.00189 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 119.99829 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47216 * 90.00011 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99955 * 15 13 11 18 18 H 1.48500 * 109.47308 * 329.99723 * 15 13 11 19 19 C 1.47021 * 125.64796 * 4.27333 * 6 4 2 20 20 C 1.53000 * 109.46924 * 120.00361 * 2 1 3 21 21 C 1.53781 * 113.61249 * 297.23675 * 20 2 1 22 22 C 1.53778 * 87.17296 * 220.06262 * 21 20 2 23 23 C 1.53780 * 87.08073 * 25.39140 * 22 21 20 24 24 H 1.09001 * 109.47115 * 292.99773 * 1 2 3 25 25 H 1.08998 * 109.47334 * 53.00146 * 1 2 3 26 26 H 1.09002 * 109.47321 * 173.00179 * 1 2 3 27 27 H 1.08997 * 109.47434 * 197.15143 * 3 2 1 28 28 H 1.09002 * 109.47561 * 317.15454 * 3 2 1 29 29 H 1.08997 * 109.47139 * 77.14820 * 3 2 1 30 30 H 1.09000 * 110.36740 * 322.93609 * 7 6 4 31 31 H 1.09004 * 110.36619 * 85.14554 * 7 6 4 32 32 H 1.09005 * 111.00484 * 81.06878 * 8 7 6 33 33 H 1.09001 * 111.00250 * 204.91914 * 8 7 6 34 34 H 0.97006 * 119.99649 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.88387 * 298.39313 * 19 6 4 36 36 H 1.09000 * 109.88140 * 59.55867 * 19 6 4 37 37 H 1.08994 * 112.91077 * 68.49420 * 20 2 1 38 38 H 1.09003 * 113.61026 * 105.47555 * 21 20 2 39 39 H 1.08999 * 113.61622 * 334.65541 * 21 20 2 40 40 H 1.09001 * 113.61274 * 139.93839 * 22 21 20 41 41 H 1.08996 * 113.62102 * 270.84010 * 22 21 20 42 42 H 1.09007 * 113.61080 * 89.11752 * 23 22 21 43 43 H 1.08993 * 113.61405 * 219.92954 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6593 -1.7428 -1.1212 6 7 1.7847 -0.1985 -2.4524 7 6 2.1317 -0.8340 -3.7366 8 6 2.2282 0.3376 -4.7455 9 6 1.0828 1.2637 -4.2578 10 1 0.1240 0.9354 -4.6591 11 6 1.3581 2.6964 -4.6357 12 1 1.4670 3.4463 -3.8663 13 6 1.4709 3.0496 -5.9636 14 7 1.3387 2.1362 -6.9005 15 14 1.8128 4.8254 -6.4319 16 1 3.2797 5.0441 -6.5062 17 1 1.2016 5.1151 -7.7540 18 1 1.2288 5.7286 -5.4081 19 6 1.1182 1.0832 -2.7255 20 6 2.0400 -0.7213 1.2492 21 6 1.6373 -0.0343 2.5648 22 6 3.0480 -0.3643 3.0803 23 6 3.4968 -0.3781 1.6095 24 1 -0.3633 0.4015 0.9460 25 1 -0.3634 0.6184 -0.8207 26 1 -0.3634 -1.0200 -0.1252 27 1 3.0869 1.4577 -0.3030 28 1 1.4508 2.0362 -0.6988 29 1 1.9457 1.8612 1.0019 30 1 3.0900 -1.3477 -3.6590 31 1 1.3509 -1.5325 -4.0374 32 1 3.1937 0.8382 -4.6718 33 1 2.0453 -0.0072 -5.7632 34 1 1.4177 2.3849 -7.8349 35 1 0.1031 1.0651 -2.3288 36 1 1.6816 1.8982 -2.2710 37 1 1.8344 -1.7916 1.2348 38 1 0.8435 -0.5526 3.1028 39 1 1.4496 1.0343 2.4597 40 1 3.4973 0.4374 3.6664 41 1 3.1185 -1.3368 3.5675 42 1 3.8182 0.5965 1.2420 43 1 4.2055 -1.1728 1.3767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397663405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:22 Heat of formation + Delta-G solvation = -37.232800 kcal Electronic energy + Delta-G solvation = -21405.980291 eV Core-core repulsion = 18450.806649 eV Total energy + Delta-G solvation = -2955.173642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.80394 -39.71770 -38.18084 -35.32459 -34.66184 -31.83524 -30.11618 -28.48608 -27.04908 -26.48796 -26.11360 -24.79201 -22.33993 -21.67994 -20.32508 -19.38488 -18.46646 -17.59314 -17.20299 -16.57546 -16.44360 -16.03226 -15.73585 -15.32747 -14.65741 -14.45007 -14.18831 -14.00184 -13.77646 -13.41906 -13.22065 -13.06284 -13.03361 -12.79476 -12.68828 -12.56370 -12.50035 -12.26823 -12.14972 -12.02046 -11.57909 -11.31808 -11.20593 -11.15902 -10.92356 -10.85373 -10.52317 -10.45787 -9.49520 -8.12421 -6.22319 1.45485 1.47626 1.56221 1.67831 2.13434 2.45945 3.20244 3.42833 3.71261 3.72982 3.93917 4.02549 4.11956 4.15809 4.16602 4.33510 4.36487 4.42708 4.46568 4.63917 4.68337 4.75847 4.84403 4.91249 4.93186 4.94465 4.99513 5.08079 5.11641 5.14705 5.21099 5.24940 5.32596 5.36779 5.40438 5.46505 5.60464 5.69831 5.75566 5.89874 6.28512 6.68494 6.86364 7.20863 7.46073 8.96702 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.004996 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.958795 B = 5603.392220 C = 6025.792626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.152 4.152 4 C 0.526 3.474 5 O -0.592 6.592 6 N -0.612 5.612 7 C 0.104 3.896 8 C -0.096 4.096 9 C 0.035 3.965 10 H 0.015 0.985 11 C -0.528 4.528 12 H 0.065 0.935 13 C 0.017 3.983 14 N -0.917 5.917 15 Si 0.953 3.047 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.263 1.263 19 C 0.107 3.893 20 C -0.089 4.089 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.146 4.146 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 -0.988 16.766 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.208 4.208 4 C 0.317 3.683 5 O -0.473 6.473 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.135 4.135 9 C 0.016 3.984 10 H 0.034 0.966 11 C -0.566 4.566 12 H 0.083 0.917 13 C -0.182 4.182 14 N -0.556 5.556 15 Si 0.779 3.221 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.015 4.015 20 C -0.108 4.108 21 C -0.160 4.160 22 C -0.169 4.169 23 C -0.184 4.184 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.748 -1.572 16.704 16.794 hybrid contribution 0.413 0.384 -1.263 1.383 sum -0.335 -1.188 15.441 15.490 Atomic orbital electron populations 1.21936 0.91319 1.02221 1.04316 1.20665 0.98044 0.96628 0.91050 1.22238 1.00776 0.93318 1.04494 1.21072 0.78545 0.84473 0.84244 1.90596 1.43046 1.26769 1.86929 1.48737 1.58204 1.22191 1.05201 1.22269 0.99482 0.96257 0.83832 1.22479 0.99368 0.94496 0.97112 1.19682 0.94101 0.94981 0.89648 0.96648 1.21359 1.49148 0.93806 0.92285 0.91732 1.25694 0.94889 1.00936 0.96691 1.70069 1.50418 1.34722 1.00382 0.85623 0.78095 0.80755 0.77597 1.20619 1.21361 1.18680 1.22648 0.96651 0.84036 0.98156 1.22389 0.96877 0.98957 0.92577 1.23020 0.97310 1.01578 0.94131 1.22754 0.96770 1.02333 0.95089 1.23082 0.96101 1.01425 0.97751 0.88610 0.91592 0.93313 0.93636 0.90771 0.88602 0.92325 0.92112 0.94011 0.91861 0.93031 0.90724 0.90393 0.90764 0.90306 0.88286 0.90086 0.90139 0.89777 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.20 71.98 0.59 -2.65 16 2 C -0.06 -1.64 0.41 -52.93 -0.02 -1.66 16 3 C -0.15 -3.66 6.31 71.98 0.45 -3.20 16 4 C 0.53 19.32 6.46 87.66 0.57 19.89 16 5 O -0.59 -25.52 16.09 -3.03 -0.05 -25.57 16 6 N -0.61 -23.46 3.32 -811.77 -2.70 -26.16 16 7 C 0.10 4.25 6.93 86.85 0.60 4.86 16 8 C -0.10 -4.40 5.75 31.99 0.18 -4.22 16 9 C 0.03 1.62 2.86 -10.35 -0.03 1.59 16 10 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 11 C -0.53 -26.74 8.50 25.60 0.22 -26.52 16 12 H 0.06 3.13 7.57 -2.91 -0.02 3.11 16 13 C 0.02 0.91 5.33 84.65 0.45 1.36 16 14 N -0.92 -50.66 12.11 21.45 0.26 -50.40 16 15 Si 0.95 41.29 29.54 68.60 2.03 43.32 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 19 C 0.11 4.01 4.72 86.73 0.41 4.42 16 20 C -0.09 -2.18 2.46 -10.21 -0.03 -2.21 16 21 C -0.12 -2.07 6.43 31.12 0.20 -1.87 16 22 C -0.13 -2.30 8.08 31.12 0.25 -2.05 16 23 C -0.15 -3.51 7.31 31.18 0.23 -3.28 16 24 H 0.10 1.63 7.32 -2.39 -0.02 1.62 16 25 H 0.07 1.59 5.12 -2.39 -0.01 1.57 16 26 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 27 H 0.04 1.23 7.04 -2.39 -0.02 1.21 16 28 H 0.07 1.85 5.01 -2.39 -0.01 1.84 16 29 H 0.10 1.73 5.80 -2.39 -0.01 1.72 16 30 H 0.06 2.40 7.99 -2.39 -0.02 2.38 16 31 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.04 2.01 8.04 -2.38 -0.02 1.99 16 33 H 0.06 3.12 7.54 -2.39 -0.02 3.10 16 34 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 35 H 0.07 2.51 5.63 -2.38 -0.01 2.49 16 36 H 0.08 2.85 5.17 -2.39 -0.01 2.83 16 37 H 0.07 2.11 7.88 -2.39 -0.02 2.09 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.41 6.12 -2.39 -0.01 1.40 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.99 5.94 -2.38 -0.01 1.97 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -60.69 319.62 4.61 -56.08 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.99 Total: 18.29 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.08 Total: -15.56 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -2.44 Total: -76.56 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -60.69 4.61 -56.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397663405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.846 kcal (2) G-P(sol) polarization free energy of solvation -60.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds