Wall clock time and date at job start Mon Mar 30 2020 07:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.50697 * 109.46690 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99965 * 239.99971 * 4 2 1 6 6 C 1.37877 * 120.00490 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47173 * 59.99901 * 8 6 4 10 10 H 1.48497 * 109.47169 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47241 * 299.99984 * 8 6 4 12 12 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 13 13 N 1.46498 * 109.47059 * 299.99645 * 12 2 1 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 2 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12 17 17 H 1.09000 * 109.61286 * 59.63964 * 16 14 13 18 18 C 1.53301 * 109.61832 * 299.09559 * 16 14 13 19 19 C 1.52865 * 108.59071 * 165.82581 * 18 16 14 20 20 C 1.52073 * 110.51728 * 54.89026 * 19 18 16 21 21 H 1.09001 * 114.26741 * 193.76855 * 20 19 18 22 22 C 1.52309 * 119.84015 * 49.54684 * 20 19 18 23 23 C 1.52068 * 120.01547 * 338.29848 * 20 19 18 24 24 H 1.09009 * 117.25517 * 215.56482 * 23 20 19 25 25 C 1.52713 * 120.52664 * 5.28958 * 23 20 19 26 26 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 31 31 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 32 32 H 0.97004 * 119.99855 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47066 * 179.97438 * 12 2 1 34 34 H 1.08994 * 109.46974 * 60.00060 * 12 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 13 12 2 36 36 H 1.09003 * 109.61427 * 285.56012 * 18 16 14 37 37 H 1.09005 * 109.61616 * 46.09272 * 18 16 14 38 38 H 1.08998 * 109.26766 * 294.61891 * 19 18 16 39 39 H 1.08999 * 109.26653 * 175.15397 * 19 18 16 40 40 H 1.08993 * 117.53773 * 142.80786 * 22 20 19 41 41 H 1.09008 * 117.53314 * 357.56199 * 22 20 19 42 42 H 1.09000 * 109.35419 * 218.32291 * 25 23 20 43 43 H 1.08997 * 109.24312 * 98.66681 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8728 -0.4943 3.6694 15 8 2.5702 -1.4804 3.7807 16 6 1.3655 0.2124 4.9000 17 1 0.2755 0.2189 4.8949 18 6 1.8925 1.6518 4.9209 19 6 1.0994 2.4461 5.9587 20 6 1.1577 1.7591 7.3141 21 1 0.4320 2.1320 8.0369 22 6 2.5001 1.3205 7.8844 23 6 1.4818 0.2760 7.4020 24 1 0.9772 -0.3002 8.1776 25 6 1.8687 -0.5089 6.1504 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 0.7081 1.1609 -3.4844 33 1 3.1301 -0.7216 1.2490 34 1 1.6768 -1.7489 1.2492 35 1 0.9939 0.7579 2.3564 36 1 2.9488 1.6508 5.1898 37 1 1.7630 2.1033 3.9373 38 1 0.0605 2.5206 5.6375 39 1 1.5214 3.4474 6.0446 40 1 2.6480 1.4211 8.9596 41 1 3.3858 1.4823 7.2698 42 1 1.4256 -1.5037 6.1966 43 1 2.9540 -0.5985 6.1037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403372824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:29 Heat of formation + Delta-G solvation = -55.858670 kcal Electronic energy + Delta-G solvation = -20782.422061 eV Core-core repulsion = 17826.440740 eV Total energy + Delta-G solvation = -2955.981320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39987 -39.70606 -38.07534 -35.07360 -34.15062 -32.54640 -31.72226 -27.66723 -27.56421 -27.12023 -25.47145 -24.27833 -22.00187 -21.35513 -20.60513 -19.37813 -18.42595 -17.71648 -17.02295 -16.68963 -16.42982 -16.20985 -15.09994 -15.01862 -14.79638 -14.74030 -14.36169 -14.10837 -13.93551 -13.55235 -13.18801 -13.12194 -13.01059 -12.67585 -12.63303 -12.37544 -12.25699 -12.18485 -12.12212 -11.91448 -11.50449 -11.48466 -11.26456 -10.76246 -10.64544 -10.57334 -10.51518 -10.39570 -9.92181 -8.02419 -6.18245 1.43714 1.44897 1.51506 1.70443 2.32262 2.50095 2.88431 3.20991 3.63343 3.78475 3.82530 4.03261 4.05915 4.21344 4.30184 4.44903 4.46332 4.50729 4.60636 4.70110 4.74000 4.80031 4.94932 4.99734 5.05637 5.06300 5.11568 5.16802 5.19396 5.22025 5.29668 5.36906 5.37786 5.38824 5.43015 5.60928 5.66754 5.67216 6.15235 6.21531 6.43469 6.69543 6.85466 7.34688 7.49357 8.96192 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.042757 B = 0.003994 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.712989 B = 7009.556639 C = 7333.893137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.709 5.709 14 C 0.505 3.495 15 O -0.595 6.595 16 C -0.096 4.096 17 H 0.117 0.883 18 C -0.112 4.112 19 C -0.085 4.085 20 C -0.132 4.132 21 H 0.116 0.884 22 C -0.186 4.186 23 C -0.155 4.155 24 H 0.113 0.887 25 C -0.066 4.066 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.261 0.739 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.409 0.591 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 5.742 18.049 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.360 5.360 14 C 0.293 3.707 15 O -0.477 6.477 16 C -0.117 4.117 17 H 0.135 0.865 18 C -0.150 4.150 19 C -0.122 4.122 20 C -0.150 4.150 21 H 0.134 0.866 22 C -0.223 4.223 23 C -0.173 4.173 24 H 0.131 0.869 25 C -0.104 4.104 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.126 5.174 17.957 18.808 hybrid contribution 0.368 -0.552 -1.289 1.449 sum -1.758 4.622 16.669 17.387 Atomic orbital electron populations 1.21664 0.97032 0.98600 1.00454 1.18357 0.93309 0.93089 0.90209 1.21653 0.97821 0.97754 1.00456 1.21251 1.31867 1.12218 0.91703 0.93936 1.25433 0.95115 0.95588 1.00884 1.69895 1.36831 1.23211 1.23679 0.85835 0.78613 0.78822 0.79645 1.20331 1.20689 1.20318 1.21248 0.96842 0.95035 0.84572 1.46152 1.52753 1.31800 1.05297 1.21401 0.79566 0.84039 0.85737 1.90637 1.40531 1.28880 1.87626 1.21359 1.02835 0.96528 0.90947 0.86548 1.21630 1.00226 0.92299 1.00801 1.20890 1.01209 0.98546 0.91570 1.21937 0.99084 0.94935 0.99044 0.86609 1.23192 0.93439 1.04300 1.01394 1.22219 1.04589 0.91598 0.98854 0.86863 1.20748 1.00363 0.97960 0.91292 0.94341 0.91831 0.96453 0.96458 0.91865 0.94298 0.92986 0.94656 0.94645 0.75390 0.92168 0.90753 0.89746 0.89918 0.87739 0.89680 0.92038 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.99 0.58 -4.72 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.26 8.08 71.98 0.58 -4.67 16 4 C -0.53 -28.37 8.01 25.60 0.21 -28.16 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.57 5.15 84.65 0.44 2.01 16 7 N -0.90 -47.72 9.35 21.45 0.20 -47.51 16 8 Si 0.94 42.72 29.54 68.60 2.03 44.74 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.36 4.50 86.38 0.39 6.75 16 13 N -0.71 -24.53 4.75 -463.07 -2.20 -26.72 16 14 C 0.50 17.18 7.15 87.66 0.63 17.81 16 15 O -0.60 -25.49 15.91 -3.04 -0.05 -25.54 16 16 C -0.10 -2.29 2.50 -11.48 -0.03 -2.32 16 17 H 0.12 2.37 8.05 -2.39 -0.02 2.35 16 18 C -0.11 -2.23 5.02 30.65 0.15 -2.08 16 19 C -0.09 -1.24 5.93 30.24 0.18 -1.06 16 20 C -0.13 -1.92 6.00 -11.64 -0.07 -1.99 16 21 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 22 C -0.19 -2.98 9.66 30.58 0.30 -2.69 16 23 C -0.15 -2.72 6.19 -10.98 -0.07 -2.79 16 24 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 25 C -0.07 -1.56 4.49 30.46 0.14 -1.43 16 26 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 27 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 31 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 32 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 33 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 12.17 5.58 -92.71 -0.52 11.65 16 36 H 0.06 1.32 7.11 -2.39 -0.02 1.30 16 37 H 0.07 1.48 7.33 -2.38 -0.02 1.46 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.54 7.26 -2.38 -0.02 1.52 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.48 7.84 -2.39 -0.02 1.46 16 Total: -1.00 -60.83 328.64 3.84 -57.00 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.46 Total: 21.05 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 3.39 Total: -23.01 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.00 Total: -74.24 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -60.83 3.84 -57.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403372824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.137 kcal (2) G-P(sol) polarization free energy of solvation -60.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds