Wall clock time and date at job start Mon Mar 30 2020 07:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47343 * 2 1 4 4 C 1.50700 * 109.47230 * 239.99545 * 2 1 3 5 5 H 1.08000 * 120.00138 * 240.00028 * 4 2 1 6 6 C 1.37879 * 119.99894 * 60.00066 * 4 2 1 7 7 N 1.31510 * 120.00058 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47143 * 59.99934 * 8 6 4 10 10 H 1.48497 * 109.47292 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47421 * 300.00476 * 8 6 4 12 12 C 1.53000 * 109.47044 * 119.99647 * 2 1 3 13 13 N 1.46507 * 109.47429 * 300.00047 * 12 2 1 14 14 C 1.34773 * 120.00256 * 179.97438 * 13 12 2 15 15 O 1.21276 * 119.99833 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99851 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.61785 * 59.63997 * 16 14 13 18 18 C 1.53302 * 109.61547 * 299.10164 * 16 14 13 19 19 C 1.53785 * 107.93312 * 165.19737 * 18 16 14 20 20 C 1.52716 * 109.66882 * 55.96550 * 19 18 16 21 21 H 1.09002 * 115.39045 * 126.98281 * 20 19 18 22 22 C 1.53651 * 115.14643 * 268.38811 * 20 19 18 23 23 C 1.52065 * 120.52438 * 336.72203 * 20 19 18 24 24 H 1.08997 * 115.93196 * 151.10954 * 23 20 19 25 25 C 1.52081 * 120.01925 * 6.39225 * 23 20 19 26 26 H 1.08999 * 109.46934 * 300.00500 * 1 2 3 27 27 H 1.09001 * 109.47134 * 59.99965 * 1 2 3 28 28 H 1.08996 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46918 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46630 * 299.99245 * 3 2 1 31 31 H 1.08991 * 109.47296 * 59.99608 * 3 2 1 32 32 H 0.97000 * 120.00194 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47496 * 180.02562 * 12 2 1 34 34 H 1.08996 * 109.47262 * 59.99718 * 12 2 1 35 35 H 0.97005 * 119.99264 * 359.97438 * 13 12 2 36 36 H 1.09004 * 109.61813 * 285.55287 * 18 16 14 37 37 H 1.08998 * 109.62059 * 46.09858 * 18 16 14 38 38 H 1.08994 * 109.75484 * 295.80652 * 19 18 16 39 39 H 1.09002 * 109.44299 * 175.92774 * 19 18 16 40 40 H 1.09004 * 117.53370 * 219.45268 * 22 20 19 41 41 H 1.08999 * 117.53649 * 4.68707 * 22 20 19 42 42 H 1.09004 * 109.26506 * 98.56360 * 25 23 20 43 43 H 1.09000 * 109.26346 * 218.03127 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3225 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2204 11 1 3.8075 -1.1193 -4.0076 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8767 -0.4912 3.6696 15 8 2.5732 -1.4778 3.7809 16 6 1.3748 0.2196 4.9000 17 1 0.2849 0.2275 4.8991 18 6 1.9035 1.6585 4.9147 19 6 1.0905 2.4511 5.9519 20 6 1.1761 1.7586 7.3103 21 1 1.4963 2.3913 8.1382 22 6 0.0614 0.7402 7.5953 23 6 1.4988 0.2754 7.4021 24 1 2.0103 -0.0458 8.3095 25 6 1.8819 -0.4988 6.1505 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 0.7095 1.1616 -3.4845 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 0.9942 0.7584 2.3564 36 1 2.9609 1.6572 5.1796 37 1 1.7707 2.1073 3.9304 38 1 0.0479 2.5056 5.6392 39 1 1.4940 3.4603 6.0349 40 1 -0.3468 0.7094 8.6056 41 1 -0.6477 0.5318 6.7941 42 1 2.9673 -0.5863 6.0998 43 1 1.4429 -1.4955 6.1956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403372829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:31 Heat of formation + Delta-G solvation = -41.023668 kcal Electronic energy + Delta-G solvation = -20801.275851 eV Core-core repulsion = 17845.937825 eV Total energy + Delta-G solvation = -2955.338026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26684 -38.51181 -36.32770 -33.52686 -32.91548 -30.83240 -30.73586 -26.17214 -25.72821 -25.30392 -24.21220 -23.09732 -21.42395 -19.96503 -18.82540 -18.48408 -17.28692 -15.98517 -15.52063 -15.05430 -14.91844 -14.53451 -14.29872 -13.82175 -13.76490 -13.21735 -12.90681 -12.77554 -12.43143 -12.20776 -12.12165 -11.59421 -11.38740 -11.25928 -11.13582 -11.05614 -10.83326 -10.73201 -10.62784 -10.38093 -10.19929 -9.88831 -9.78199 -9.63074 -9.46196 -9.13784 -8.78682 -8.43421 -8.28292 -6.01782 -4.11884 3.09284 3.30293 3.34537 3.38049 3.58241 3.79045 4.40330 4.46802 4.60701 4.73126 4.87185 4.99282 5.04698 5.24172 5.24893 5.37104 5.39191 5.53084 5.63141 5.75523 5.84075 5.94489 5.98862 6.10720 6.12206 6.24711 6.25917 6.29975 6.34491 6.51594 6.79580 6.82434 6.94406 7.02139 7.06584 7.35884 7.55729 7.69475 8.01039 8.08351 8.17387 8.39065 8.75186 8.88869 9.53864 10.99554 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041657 B = 0.004031 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.002415 B = 6944.773210 C = 7259.002382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.508 3.492 15 O -0.554 6.554 16 C -0.109 4.109 17 H 0.093 0.907 18 C -0.110 4.110 19 C -0.088 4.088 20 C -0.150 4.150 21 H 0.100 0.900 22 C -0.188 4.188 23 C -0.135 4.135 24 H 0.099 0.901 25 C -0.068 4.068 26 H 0.006 0.994 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.006 0.994 32 H 0.260 0.740 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.397 0.603 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 4.192 16.526 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.293 3.707 15 O -0.433 6.433 16 C -0.131 4.131 17 H 0.111 0.889 18 C -0.148 4.148 19 C -0.126 4.126 20 C -0.168 4.168 21 H 0.119 0.881 22 C -0.225 4.225 23 C -0.154 4.154 24 H 0.117 0.883 25 C -0.105 4.105 26 H 0.025 0.975 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.232 0.768 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.597 3.597 16.422 16.887 hybrid contribution -0.019 -0.102 -0.849 0.856 sum -1.616 3.495 15.573 16.042 Atomic orbital electron populations 1.21823 0.97786 0.99138 1.00039 1.18352 0.92775 0.92768 0.90605 1.21820 0.98551 0.98340 1.00034 1.20955 1.31522 1.12113 0.89933 0.92525 1.24873 0.94849 0.94920 0.98820 1.69791 1.36661 1.22711 1.23307 0.86635 0.79247 0.79800 0.82188 1.20286 1.21327 1.20287 1.21705 0.98084 0.95767 0.83565 1.46326 1.52572 1.31702 1.06058 1.20507 0.80650 0.84643 0.84875 1.90652 1.38716 1.26845 1.87047 1.21386 1.01710 0.96260 0.93712 0.88895 1.21750 1.00356 0.93105 0.99611 1.21240 1.00403 0.98447 0.92471 1.22266 1.03825 0.91703 0.99006 0.88143 1.23176 0.91860 1.04994 1.02454 1.21862 0.98326 0.95501 0.99668 0.88302 1.20620 1.01992 0.97924 0.90002 0.97538 0.89612 0.95485 0.95476 0.89620 0.97532 0.92965 0.92814 0.92837 0.76764 0.90870 0.91046 0.91297 0.91288 0.89220 0.88681 0.90512 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.31 8.01 -34.44 -0.28 -13.59 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.56 9.35 55.43 0.52 -23.04 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.81 4.50 -4.04 -0.02 2.80 16 13 N -0.72 -12.73 4.75 -60.29 -0.29 -13.02 16 14 C 0.51 8.77 7.15 -10.99 -0.08 8.69 16 15 O -0.55 -11.62 15.92 5.56 0.09 -11.53 16 16 C -0.11 -1.40 2.27 -91.68 -0.21 -1.61 16 17 H 0.09 1.09 7.10 -51.93 -0.37 0.72 16 18 C -0.11 -1.23 5.30 -26.17 -0.14 -1.37 16 19 C -0.09 -0.81 5.84 -26.47 -0.15 -0.97 16 20 C -0.15 -1.36 6.22 -90.90 -0.57 -1.92 16 21 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.19 -1.68 9.60 -26.75 -0.26 -1.94 16 23 C -0.14 -1.34 6.00 -91.92 -0.55 -1.89 16 24 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 25 C -0.07 -0.83 4.59 -27.27 -0.13 -0.96 16 26 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 27 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 31 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.40 6.38 5.58 -40.82 -0.23 6.16 16 36 H 0.07 0.85 8.04 -51.93 -0.42 0.44 16 37 H 0.07 0.81 7.33 -51.93 -0.38 0.43 16 38 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.87 7.27 -51.93 -0.38 0.50 16 42 H 0.08 1.03 7.93 -51.93 -0.41 0.62 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -28.01 328.62 -8.98 -36.99 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.29 Total: 5.06 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.94 Total: -15.13 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.23 Total: -36.06 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.01 -8.98 -36.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403372829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.038 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds