Wall clock time and date at job start Mon Mar 30 2020 07:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47343 * 2 1 4 4 C 1.50700 * 109.47230 * 239.99545 * 2 1 3 5 5 H 1.08000 * 120.00138 * 240.00028 * 4 2 1 6 6 C 1.37879 * 119.99894 * 60.00066 * 4 2 1 7 7 N 1.31510 * 120.00058 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47143 * 59.99934 * 8 6 4 10 10 H 1.48497 * 109.47292 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47421 * 300.00476 * 8 6 4 12 12 C 1.53000 * 109.47044 * 119.99647 * 2 1 3 13 13 N 1.46507 * 109.47429 * 300.00047 * 12 2 1 14 14 C 1.34773 * 120.00256 * 179.97438 * 13 12 2 15 15 O 1.21276 * 119.99833 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99851 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.61785 * 59.63997 * 16 14 13 18 18 C 1.53302 * 109.61547 * 299.10164 * 16 14 13 19 19 C 1.53785 * 107.93312 * 165.19737 * 18 16 14 20 20 C 1.52716 * 109.66882 * 55.96550 * 19 18 16 21 21 H 1.09002 * 115.39045 * 126.98281 * 20 19 18 22 22 C 1.53651 * 115.14643 * 268.38811 * 20 19 18 23 23 C 1.52065 * 120.52438 * 336.72203 * 20 19 18 24 24 H 1.08997 * 115.93196 * 151.10954 * 23 20 19 25 25 C 1.52081 * 120.01925 * 6.39225 * 23 20 19 26 26 H 1.08999 * 109.46934 * 300.00500 * 1 2 3 27 27 H 1.09001 * 109.47134 * 59.99965 * 1 2 3 28 28 H 1.08996 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46918 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46630 * 299.99245 * 3 2 1 31 31 H 1.08991 * 109.47296 * 59.99608 * 3 2 1 32 32 H 0.97000 * 120.00194 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47496 * 180.02562 * 12 2 1 34 34 H 1.08996 * 109.47262 * 59.99718 * 12 2 1 35 35 H 0.97005 * 119.99264 * 359.97438 * 13 12 2 36 36 H 1.09004 * 109.61813 * 285.55287 * 18 16 14 37 37 H 1.08998 * 109.62059 * 46.09858 * 18 16 14 38 38 H 1.08994 * 109.75484 * 295.80652 * 19 18 16 39 39 H 1.09002 * 109.44299 * 175.92774 * 19 18 16 40 40 H 1.09004 * 117.53370 * 219.45268 * 22 20 19 41 41 H 1.08999 * 117.53649 * 4.68707 * 22 20 19 42 42 H 1.09004 * 109.26506 * 98.56360 * 25 23 20 43 43 H 1.09000 * 109.26346 * 218.03127 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3225 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2204 11 1 3.8075 -1.1193 -4.0076 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8767 -0.4912 3.6696 15 8 2.5732 -1.4778 3.7809 16 6 1.3748 0.2196 4.9000 17 1 0.2849 0.2275 4.8991 18 6 1.9035 1.6585 4.9147 19 6 1.0905 2.4511 5.9519 20 6 1.1761 1.7586 7.3103 21 1 1.4963 2.3913 8.1382 22 6 0.0614 0.7402 7.5953 23 6 1.4988 0.2754 7.4021 24 1 2.0103 -0.0458 8.3095 25 6 1.8819 -0.4988 6.1505 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 0.7095 1.1616 -3.4845 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 0.9942 0.7584 2.3564 36 1 2.9609 1.6572 5.1796 37 1 1.7707 2.1073 3.9304 38 1 0.0479 2.5056 5.6392 39 1 1.4940 3.4603 6.0349 40 1 -0.3468 0.7094 8.6056 41 1 -0.6477 0.5318 6.7941 42 1 2.9673 -0.5863 6.0998 43 1 1.4429 -1.4955 6.1956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403372829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:31 Heat of formation + Delta-G solvation = -55.349860 kcal Electronic energy + Delta-G solvation = -20801.897081 eV Core-core repulsion = 17845.937825 eV Total energy + Delta-G solvation = -2955.959257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41298 -39.69412 -38.07501 -35.07194 -34.12692 -32.55063 -31.68270 -27.69726 -27.56658 -27.14827 -25.44058 -24.08294 -22.24084 -21.26154 -20.60944 -19.40197 -18.58341 -17.74802 -16.87274 -16.66296 -16.35683 -15.96255 -15.30939 -14.95520 -14.94635 -14.64505 -14.41947 -14.25716 -13.96662 -13.39877 -13.19663 -13.09617 -13.00113 -12.67658 -12.63722 -12.45327 -12.25360 -12.15729 -12.06196 -11.92019 -11.50331 -11.48229 -11.26349 -10.77343 -10.65788 -10.60278 -10.47267 -10.39534 -9.92306 -8.02375 -6.18218 1.43786 1.44996 1.51589 1.69718 2.32123 2.50145 2.89132 3.21063 3.60753 3.77652 3.80697 4.03087 4.09930 4.17271 4.32766 4.45603 4.48487 4.50849 4.59274 4.68482 4.70779 4.85242 4.97923 4.99668 5.02650 5.05599 5.11973 5.14898 5.19106 5.22632 5.30379 5.32625 5.37686 5.38061 5.46930 5.60442 5.66725 5.67051 6.15013 6.21388 6.43377 6.68840 6.85476 7.33956 7.49400 8.96255 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041657 B = 0.004031 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.002415 B = 6944.773210 C = 7259.002382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.709 5.709 14 C 0.505 3.495 15 O -0.594 6.594 16 C -0.098 4.098 17 H 0.112 0.888 18 C -0.108 4.108 19 C -0.085 4.085 20 C -0.146 4.146 21 H 0.115 0.885 22 C -0.181 4.181 23 C -0.147 4.147 24 H 0.107 0.893 25 C -0.065 4.065 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.261 0.739 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.408 0.592 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 5.547 17.945 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.360 5.360 14 C 0.293 3.707 15 O -0.476 6.476 16 C -0.119 4.119 17 H 0.130 0.870 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.164 4.164 21 H 0.133 0.867 22 C -0.218 4.218 23 C -0.165 4.165 24 H 0.126 0.874 25 C -0.103 4.103 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.246 0.754 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.524 4.976 17.853 18.705 hybrid contribution 0.285 -0.555 -1.276 1.420 sum -2.239 4.422 16.577 17.303 Atomic orbital electron populations 1.21662 0.97065 0.98596 1.00433 1.18358 0.93287 0.93108 0.90228 1.21654 0.97844 0.97739 1.00445 1.21249 1.31863 1.12224 0.91683 0.93914 1.25431 0.95107 0.95585 1.00883 1.69891 1.36880 1.23176 1.23678 0.85837 0.78617 0.78821 0.79645 1.20326 1.20697 1.20317 1.21257 0.96872 0.95027 0.84535 1.46155 1.52703 1.31851 1.05313 1.21351 0.79560 0.84065 0.85699 1.90636 1.40515 1.28808 1.87610 1.21391 1.02584 0.96773 0.91198 0.87012 1.21757 1.00308 0.91981 1.00574 1.21256 1.00583 0.98723 0.91659 1.22368 1.03427 0.91185 0.99459 0.86663 1.23250 0.91142 1.04145 1.03276 1.21785 0.99774 0.96282 0.98634 0.87449 1.20544 1.00736 0.97861 0.91122 0.94388 0.91833 0.96446 0.96420 0.91858 0.94329 0.92986 0.94590 0.94629 0.75424 0.91641 0.90984 0.90337 0.89815 0.87821 0.88802 0.92361 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.53 -28.33 8.01 25.60 0.21 -28.12 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.58 5.15 84.66 0.44 2.01 16 7 N -0.90 -47.71 9.35 21.45 0.20 -47.51 16 8 Si 0.94 42.69 29.54 68.60 2.03 44.71 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.15 6.36 4.50 86.38 0.39 6.75 16 13 N -0.71 -24.55 4.75 -463.05 -2.20 -26.75 16 14 C 0.51 17.20 7.15 87.66 0.63 17.83 16 15 O -0.59 -25.37 15.92 -3.02 -0.05 -25.42 16 16 C -0.10 -2.36 2.27 -11.48 -0.03 -2.38 16 17 H 0.11 2.31 7.10 -2.39 -0.02 2.29 16 18 C -0.11 -2.17 5.30 30.96 0.16 -2.01 16 19 C -0.08 -1.26 5.84 30.76 0.18 -1.08 16 20 C -0.15 -2.16 6.22 -10.98 -0.07 -2.23 16 21 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 22 C -0.18 -2.67 9.60 30.58 0.29 -2.38 16 23 C -0.15 -2.59 6.00 -11.64 -0.07 -2.66 16 24 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 25 C -0.06 -1.54 4.59 30.25 0.14 -1.40 16 26 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 27 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 31 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 32 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 33 H 0.04 1.66 8.14 -2.38 -0.02 1.65 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.41 12.20 5.58 -92.70 -0.52 11.69 16 36 H 0.06 1.42 8.04 -2.39 -0.02 1.40 16 37 H 0.07 1.44 7.33 -2.39 -0.02 1.43 16 38 H 0.08 1.06 8.02 -2.39 -0.02 1.04 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.42 7.27 -2.39 -0.02 1.40 16 42 H 0.06 1.58 7.93 -2.39 -0.02 1.56 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -60.51 328.62 3.85 -56.66 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.47 Total: 21.06 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 3.40 Total: -22.75 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.00 Total: -74.26 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -60.51 3.85 -56.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403372829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.309 kcal (2) G-P(sol) polarization free energy of solvation -60.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds