Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 C 1.53003 * 109.46722 * 119.99553 * 2 1 3 5 5 C 1.52998 * 109.46891 * 174.99822 * 4 2 1 6 6 H 1.08998 * 115.56456 * 29.31604 * 5 4 2 7 7 C 1.52998 * 117.50272 * 243.62198 * 5 4 2 8 8 C 1.52993 * 60.00123 * 252.51192 * 7 5 4 9 9 H 1.09001 * 117.49964 * 252.48349 * 8 7 5 10 10 C 1.50707 * 117.50105 * 107.48701 * 8 7 5 11 11 O 1.21273 * 120.00073 * 291.39193 * 10 8 7 12 12 N 1.34774 * 119.99620 * 111.38811 * 10 8 7 13 13 C 1.46501 * 119.99566 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47129 * 182.80935 * 13 12 10 15 15 C 1.50693 * 115.56185 * 319.97554 * 14 13 12 16 16 H 1.08007 * 119.99826 * 95.37216 * 15 14 13 17 17 C 1.37876 * 120.00459 * 275.36888 * 15 14 13 18 18 N 1.31519 * 119.99446 * 7.27005 * 17 15 14 19 19 Si 1.86790 * 120.00422 * 187.26796 * 17 15 14 20 20 H 1.48499 * 109.47546 * 89.99977 * 19 17 15 21 21 H 1.48496 * 109.47346 * 210.00130 * 19 17 15 22 22 H 1.48502 * 109.47217 * 330.00003 * 19 17 15 23 23 C 1.53005 * 117.49812 * 174.28745 * 14 13 12 24 24 C 1.53005 * 60.03234 * 252.52702 * 23 14 13 25 25 H 1.08994 * 109.47423 * 300.00520 * 1 2 3 26 26 H 1.09004 * 109.46990 * 60.00284 * 1 2 3 27 27 H 1.08992 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47221 * 239.99579 * 2 1 3 29 29 H 1.08997 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46849 * 299.99802 * 3 2 1 31 31 H 1.08994 * 109.47290 * 59.99398 * 3 2 1 32 32 H 1.09003 * 109.47091 * 55.00070 * 4 2 1 33 33 H 1.08991 * 109.47401 * 295.00132 * 4 2 1 34 34 H 1.09002 * 117.50425 * 145.02005 * 7 5 4 35 35 H 1.09009 * 117.49518 * 0.02562 * 7 5 4 36 36 H 0.96996 * 120.00482 * 0.02562 * 12 10 8 37 37 H 1.08998 * 109.47284 * 62.81481 * 13 12 10 38 38 H 1.08998 * 109.47644 * 302.81115 * 13 12 10 39 39 H 0.96998 * 119.99636 * 174.99335 * 18 17 15 40 40 H 1.08995 * 117.49803 * 145.02300 * 23 14 13 41 41 H 1.08999 * 117.49387 * 0.02562 * 23 14 13 42 42 H 1.08999 * 117.50203 * 107.47739 * 24 23 14 43 43 H 1.09005 * 117.49603 * 252.48282 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1881 6 1 4.0721 -0.0356 0.6423 7 6 4.1696 -2.2345 1.1156 8 6 4.2801 -1.4196 2.4058 9 1 5.2581 -1.0117 2.6612 10 6 3.4288 -1.8467 3.5737 11 8 2.2239 -1.7183 3.5249 12 7 4.0067 -2.3715 4.6724 13 6 3.1791 -2.7872 5.8075 14 6 4.0798 -3.2790 6.9424 15 6 5.2673 -4.1044 6.5188 16 1 6.2296 -3.6343 6.3794 17 6 5.1254 -5.4598 6.3094 18 7 3.9303 -6.0080 6.3388 19 14 6.6304 -6.5172 5.9838 20 1 7.1672 -7.0244 7.2722 21 1 6.2521 -7.6640 5.1196 22 1 7.6684 -5.7040 5.3009 23 6 3.4110 -3.6337 8.2720 24 6 4.2528 -2.3613 8.1554 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 5.0749 -2.3625 0.5220 35 1 3.4812 -3.0796 1.1112 36 1 4.9704 -2.4739 4.7116 37 1 2.5141 -3.5929 5.4966 38 1 2.5867 -1.9407 6.1547 39 1 3.8219 -6.9468 6.1201 40 1 3.8300 -4.4640 8.8404 41 1 2.3293 -3.5170 8.3381 42 1 3.7249 -1.4078 8.1443 43 1 5.2255 -2.3546 8.6473 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404048583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = -14.600851 kcal Electronic energy + Delta-G solvation = -20386.536882 eV Core-core repulsion = 17432.344635 eV Total energy + Delta-G solvation = -2954.192247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61236 -37.36576 -36.38299 -34.80537 -33.13090 -32.03531 -27.59694 -27.12678 -26.39667 -25.40450 -22.97513 -21.26723 -21.11889 -19.76792 -19.58700 -18.84928 -16.58453 -16.23730 -15.21393 -15.05031 -14.70022 -14.50168 -14.24784 -13.94988 -13.40550 -13.23961 -12.78918 -12.54826 -12.44865 -12.22263 -12.00497 -11.79098 -11.62499 -11.54220 -11.06279 -10.94753 -10.87877 -10.74702 -10.56544 -10.53338 -10.24834 -9.86831 -9.74203 -9.62762 -9.03396 -8.85282 -8.54980 -8.28779 -7.89551 -6.12571 -4.22038 3.14460 3.22329 3.30750 3.31296 3.90731 4.19058 4.31385 4.70900 5.00161 5.03916 5.13157 5.15037 5.22098 5.25916 5.33489 5.47974 5.63520 5.64778 5.79756 5.85588 5.88951 5.97519 6.04117 6.09639 6.15129 6.17963 6.25954 6.31192 6.35329 6.49733 6.56555 6.57244 6.71749 6.81302 6.93932 7.08773 7.31484 7.39585 7.52567 7.76362 8.31192 8.50198 8.80225 9.06461 9.45534 10.95144 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.004544 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.824874 B = 6160.288321 C = 6726.483214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.072 4.072 5 C -0.120 4.120 6 H 0.108 0.892 7 C -0.154 4.154 8 C -0.186 4.186 9 H 0.117 0.883 10 C 0.530 3.470 11 O -0.558 6.558 12 N -0.691 5.691 13 C 0.165 3.835 14 C 0.029 3.971 15 C -0.506 4.506 16 H 0.061 0.939 17 C 0.078 3.922 18 N -0.870 5.870 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.152 4.152 24 C -0.211 4.211 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.405 0.595 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 9.771 -10.286 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.109 4.109 5 C -0.138 4.138 6 H 0.125 0.875 7 C -0.191 4.191 8 C -0.208 4.208 9 H 0.135 0.865 10 C 0.316 3.684 11 O -0.439 6.439 12 N -0.340 5.340 13 C 0.042 3.958 14 C 0.028 3.972 15 C -0.543 4.543 16 H 0.079 0.921 17 C -0.127 4.127 18 N -0.505 5.505 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.190 4.190 24 C -0.248 4.248 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.595 9.643 -10.232 14.150 hybrid contribution 1.384 -0.863 0.004 1.631 sum -0.210 8.780 -10.228 13.481 Atomic orbital electron populations 1.21803 0.95541 1.01673 1.01233 1.21194 0.95517 0.96108 0.99007 1.21885 1.00931 0.96339 1.01242 1.21255 0.91311 1.01510 0.96856 1.22437 0.96488 0.96360 0.98556 0.87455 1.23028 1.03149 0.95334 0.97594 1.22298 1.01385 1.07305 0.89780 0.86484 1.19551 0.87848 0.77923 0.83126 1.90622 1.14719 1.56845 1.81699 1.45959 1.11832 1.60580 1.15648 1.20829 0.92358 0.96703 0.85937 1.19048 0.96526 0.96300 0.85330 1.20300 0.93651 0.91762 1.48595 0.92106 1.24984 0.95624 0.97766 0.94360 1.69984 1.21397 1.12903 1.46214 0.86651 0.83205 0.80231 0.78203 1.20590 1.21258 1.19791 1.22496 0.95901 0.96913 1.03739 1.23093 1.00711 0.93409 1.07619 0.92694 0.93284 0.92758 0.91726 0.92688 0.93366 0.92759 0.91262 0.90202 0.88366 0.88368 0.75899 0.91699 0.94522 0.92809 0.89950 0.91710 0.91625 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.19 37.16 0.34 -1.23 16 2 C -0.10 -1.12 2.92 -90.62 -0.26 -1.39 16 3 C -0.15 -1.47 9.01 37.16 0.33 -1.13 16 4 C -0.07 -1.02 3.22 -26.73 -0.09 -1.10 16 5 C -0.12 -1.56 5.52 -90.62 -0.50 -2.06 16 6 H 0.11 1.17 6.38 -51.93 -0.33 0.84 16 7 C -0.15 -2.05 9.88 -26.74 -0.26 -2.31 16 8 C -0.19 -2.78 6.19 -91.77 -0.57 -3.35 16 9 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 10 C 0.53 10.22 7.59 -10.98 -0.08 10.13 16 11 O -0.56 -12.13 13.10 5.56 0.07 -12.05 16 12 N -0.69 -14.15 5.37 -60.29 -0.32 -14.47 16 13 C 0.17 3.78 5.75 -4.04 -0.02 3.76 16 14 C 0.03 0.67 1.71 -155.62 -0.27 0.41 16 15 C -0.51 -12.72 7.40 -34.44 -0.26 -12.97 16 16 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 17 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 18 N -0.87 -23.81 12.97 55.43 0.72 -23.09 16 19 Si 0.89 20.13 29.55 -169.99 -5.02 15.11 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 23 C -0.15 -3.49 9.51 -26.73 -0.25 -3.74 16 24 C -0.21 -4.45 9.89 -26.69 -0.26 -4.71 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.52 6.41 -51.93 -0.33 0.19 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.12 7.30 -51.93 -0.38 0.74 16 33 H 0.08 1.31 6.92 -51.93 -0.36 0.95 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.45 8.03 -51.92 -0.42 1.03 16 36 H 0.40 7.96 7.39 -40.82 -0.30 7.66 16 37 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.04 0.82 7.95 -51.93 -0.41 0.40 16 39 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -27.77 347.79 -9.13 -36.90 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.57 Total: 10.16 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.25 Total: -17.79 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.40 Total: -37.56 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.77 -9.13 -36.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404048583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.303 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds