Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 C 1.53003 * 109.46722 * 119.99553 * 2 1 3 5 5 C 1.52998 * 109.46891 * 174.99822 * 4 2 1 6 6 H 1.08998 * 115.56456 * 29.31604 * 5 4 2 7 7 C 1.52998 * 117.50272 * 243.62198 * 5 4 2 8 8 C 1.52993 * 60.00123 * 252.51192 * 7 5 4 9 9 H 1.09001 * 117.49964 * 252.48349 * 8 7 5 10 10 C 1.50707 * 117.50105 * 107.48701 * 8 7 5 11 11 O 1.21273 * 120.00073 * 291.39193 * 10 8 7 12 12 N 1.34774 * 119.99620 * 111.38811 * 10 8 7 13 13 C 1.46501 * 119.99566 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47129 * 182.80935 * 13 12 10 15 15 C 1.50693 * 115.56185 * 319.97554 * 14 13 12 16 16 H 1.08007 * 119.99826 * 95.37216 * 15 14 13 17 17 C 1.37876 * 120.00459 * 275.36888 * 15 14 13 18 18 N 1.31519 * 119.99446 * 7.27005 * 17 15 14 19 19 Si 1.86790 * 120.00422 * 187.26796 * 17 15 14 20 20 H 1.48499 * 109.47546 * 89.99977 * 19 17 15 21 21 H 1.48496 * 109.47346 * 210.00130 * 19 17 15 22 22 H 1.48502 * 109.47217 * 330.00003 * 19 17 15 23 23 C 1.53005 * 117.49812 * 174.28745 * 14 13 12 24 24 C 1.53005 * 60.03234 * 252.52702 * 23 14 13 25 25 H 1.08994 * 109.47423 * 300.00520 * 1 2 3 26 26 H 1.09004 * 109.46990 * 60.00284 * 1 2 3 27 27 H 1.08992 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47221 * 239.99579 * 2 1 3 29 29 H 1.08997 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46849 * 299.99802 * 3 2 1 31 31 H 1.08994 * 109.47290 * 59.99398 * 3 2 1 32 32 H 1.09003 * 109.47091 * 55.00070 * 4 2 1 33 33 H 1.08991 * 109.47401 * 295.00132 * 4 2 1 34 34 H 1.09002 * 117.50425 * 145.02005 * 7 5 4 35 35 H 1.09009 * 117.49518 * 0.02562 * 7 5 4 36 36 H 0.96996 * 120.00482 * 0.02562 * 12 10 8 37 37 H 1.08998 * 109.47284 * 62.81481 * 13 12 10 38 38 H 1.08998 * 109.47644 * 302.81115 * 13 12 10 39 39 H 0.96998 * 119.99636 * 174.99335 * 18 17 15 40 40 H 1.08995 * 117.49803 * 145.02300 * 23 14 13 41 41 H 1.08999 * 117.49387 * 0.02562 * 23 14 13 42 42 H 1.08999 * 117.50203 * 107.47739 * 24 23 14 43 43 H 1.09005 * 117.49603 * 252.48282 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1881 6 1 4.0721 -0.0356 0.6423 7 6 4.1696 -2.2345 1.1156 8 6 4.2801 -1.4196 2.4058 9 1 5.2581 -1.0117 2.6612 10 6 3.4288 -1.8467 3.5737 11 8 2.2239 -1.7183 3.5249 12 7 4.0067 -2.3715 4.6724 13 6 3.1791 -2.7872 5.8075 14 6 4.0798 -3.2790 6.9424 15 6 5.2673 -4.1044 6.5188 16 1 6.2296 -3.6343 6.3794 17 6 5.1254 -5.4598 6.3094 18 7 3.9303 -6.0080 6.3388 19 14 6.6304 -6.5172 5.9838 20 1 7.1672 -7.0244 7.2722 21 1 6.2521 -7.6640 5.1196 22 1 7.6684 -5.7040 5.3009 23 6 3.4110 -3.6337 8.2720 24 6 4.2528 -2.3613 8.1554 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 5.0749 -2.3625 0.5220 35 1 3.4812 -3.0796 1.1112 36 1 4.9704 -2.4739 4.7116 37 1 2.5141 -3.5929 5.4966 38 1 2.5867 -1.9407 6.1547 39 1 3.8219 -6.9468 6.1201 40 1 3.8300 -4.4640 8.8404 41 1 2.3293 -3.5170 8.3381 42 1 3.7249 -1.4078 8.1443 43 1 5.2255 -2.3546 8.6473 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404048583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = -28.684811 kcal Electronic energy + Delta-G solvation = -20387.147608 eV Core-core repulsion = 17432.344635 eV Total energy + Delta-G solvation = -2954.802973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03694 -38.88680 -37.88371 -35.85090 -34.82247 -34.00977 -28.90450 -28.03994 -27.84347 -27.29512 -24.35309 -22.95390 -22.28165 -21.38570 -20.76813 -20.41501 -18.13346 -17.86870 -16.82002 -16.46155 -16.35425 -15.83273 -15.68205 -15.38535 -14.70194 -14.55231 -14.38755 -13.81142 -13.74950 -13.61685 -13.46770 -13.16253 -12.95701 -12.87479 -12.79587 -12.49054 -12.34683 -12.03821 -11.90411 -11.67267 -11.49823 -11.42923 -10.96910 -10.92199 -10.84524 -10.51647 -10.39836 -10.04795 -9.67008 -8.10611 -6.24789 1.43006 1.46223 1.53924 1.69624 2.40328 2.47788 2.95673 3.18233 3.45365 3.65108 3.93972 3.99917 4.15029 4.18915 4.25905 4.26557 4.40817 4.51335 4.52522 4.66762 4.73146 4.82945 4.86922 4.89450 4.97583 4.98458 5.00250 5.07054 5.10500 5.14166 5.21451 5.24372 5.33092 5.43788 5.47834 5.59530 5.60006 5.68235 5.75098 5.80800 6.36853 6.82060 6.92196 7.45666 7.49999 8.96940 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.004544 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.824874 B = 6160.288321 C = 6726.483214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.068 4.068 5 C -0.108 4.108 6 H 0.141 0.859 7 C -0.145 4.145 8 C -0.199 4.199 9 H 0.146 0.854 10 C 0.522 3.478 11 O -0.590 6.590 12 N -0.693 5.693 13 C 0.180 3.820 14 C 0.006 3.994 15 C -0.506 4.506 16 H 0.067 0.933 17 C 0.031 3.969 18 N -0.906 5.906 19 Si 0.949 3.051 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.258 1.258 23 C -0.163 4.163 24 C -0.181 4.181 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.024 0.976 38 H 0.038 0.962 39 H 0.258 0.742 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 11.348 -11.869 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.106 4.106 5 C -0.126 4.126 6 H 0.159 0.841 7 C -0.183 4.183 8 C -0.220 4.220 9 H 0.163 0.837 10 C 0.310 3.690 11 O -0.472 6.472 12 N -0.343 5.343 13 C 0.055 3.945 14 C 0.005 3.995 15 C -0.544 4.544 16 H 0.085 0.915 17 C -0.171 4.171 18 N -0.542 5.542 19 Si 0.775 3.225 20 H -0.207 1.207 21 H -0.219 1.219 22 H -0.182 1.182 23 C -0.201 4.201 24 C -0.218 4.218 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.488 11.239 -11.819 16.317 hybrid contribution 0.663 -1.336 0.518 1.579 sum 1.152 9.903 -11.302 15.071 Atomic orbital electron populations 1.21822 0.95601 1.01230 1.01739 1.21165 0.95556 0.96953 0.97694 1.21862 1.01576 0.95032 1.01635 1.21124 0.92511 0.99622 0.97313 1.22590 0.95568 0.97258 0.97191 0.84110 1.23128 1.04008 0.94668 0.96466 1.22333 1.02067 1.09141 0.88471 0.83668 1.20395 0.88015 0.76822 0.83726 1.90616 1.16460 1.57841 1.82280 1.45920 1.11759 1.60966 1.15609 1.20472 0.92098 0.95251 0.86683 1.19135 0.96611 0.97817 0.85920 1.20578 0.94234 0.91984 1.47563 0.91529 1.25686 0.97807 0.99065 0.94498 1.70123 1.23385 1.12855 1.47883 0.85697 0.80418 0.78519 0.77820 1.20696 1.21861 1.18236 1.22427 0.96390 0.97718 1.03546 1.23091 1.00703 0.93275 1.04753 0.93698 0.91232 0.93741 0.90507 0.91613 0.91686 0.93687 0.94430 0.93015 0.84947 0.90590 0.75336 0.95810 0.94416 0.93270 0.91807 0.91309 0.89512 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.19 71.98 0.66 -2.43 16 2 C -0.10 -2.00 2.92 -10.79 -0.03 -2.03 16 3 C -0.14 -2.50 9.01 71.98 0.65 -1.85 16 4 C -0.07 -1.92 3.22 30.59 0.10 -1.82 16 5 C -0.11 -2.57 5.52 -10.80 -0.06 -2.63 16 6 H 0.14 2.47 6.38 -2.39 -0.02 2.45 16 7 C -0.15 -3.56 9.88 30.59 0.30 -3.26 16 8 C -0.20 -5.58 6.19 -11.54 -0.07 -5.65 16 9 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 10 C 0.52 20.29 7.59 87.66 0.67 20.96 16 11 O -0.59 -26.60 13.10 -3.01 -0.04 -26.64 16 12 N -0.69 -28.52 5.37 -463.06 -2.48 -31.01 16 13 C 0.18 8.42 5.75 86.38 0.50 8.91 16 14 C 0.01 0.27 1.71 -52.90 -0.09 0.18 16 15 C -0.51 -25.26 7.40 25.60 0.19 -25.07 16 16 H 0.07 3.19 7.82 -2.91 -0.02 3.16 16 17 C 0.03 1.60 5.39 84.65 0.46 2.06 16 18 N -0.91 -50.77 12.97 21.45 0.28 -50.49 16 19 Si 0.95 41.13 29.55 68.60 2.03 43.16 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 C -0.16 -7.51 9.51 30.60 0.29 -7.22 16 24 C -0.18 -7.38 9.89 30.62 0.30 -7.08 16 25 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.00 6.41 -2.39 -0.02 0.98 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 1.27 7.30 -2.39 -0.02 1.25 16 33 H 0.05 1.74 6.92 -2.39 -0.02 1.72 16 34 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.22 8.03 -2.38 -0.02 2.20 16 36 H 0.41 15.85 7.39 -92.71 -0.69 15.16 16 37 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.72 7.95 -2.39 -0.02 1.70 16 39 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 40 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.09 3.17 8.09 -2.39 -0.02 3.15 16 43 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 Total: -1.00 -61.44 347.79 3.93 -57.51 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 0.29 Total: 34.38 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 3.86 Total: -26.92 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.21 Total: -81.50 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.04 Total: -26.64 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -61.44 3.93 -57.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404048583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.829 kcal (2) G-P(sol) polarization free energy of solvation -61.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds