Wall clock time and date at job start Mon Mar 30 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46962 * 2 1 4 4 C 1.53002 * 109.47426 * 120.00030 * 2 1 3 5 5 C 1.52991 * 109.47505 * 175.00103 * 4 2 1 6 6 H 1.09007 * 115.56191 * 330.69243 * 5 4 2 7 7 C 1.53077 * 117.51630 * 116.39173 * 5 4 2 8 8 C 1.52998 * 117.50221 * 185.00117 * 5 4 2 9 9 H 1.08996 * 117.50084 * 145.00078 * 8 5 4 10 10 C 1.50705 * 117.49667 * 359.97438 * 8 5 4 11 11 O 1.21285 * 119.99559 * 9.98493 * 10 8 5 12 12 N 1.34773 * 119.99864 * 189.98447 * 10 8 5 13 13 C 1.46495 * 119.99744 * 184.57901 * 12 10 8 14 14 C 1.53002 * 109.47376 * 186.18853 * 13 12 10 15 15 C 1.50700 * 115.54870 * 36.66685 * 14 13 12 16 16 H 1.07994 * 119.99885 * 269.29439 * 15 14 13 17 17 C 1.37883 * 119.99987 * 89.29180 * 15 14 13 18 18 N 1.31509 * 119.99927 * 171.01921 * 17 15 14 19 19 Si 1.86796 * 119.99857 * 351.01628 * 17 15 14 20 20 H 1.48500 * 109.47392 * 93.03275 * 19 17 15 21 21 H 1.48503 * 109.46999 * 213.03153 * 19 17 15 22 22 H 1.48502 * 109.47168 * 333.03017 * 19 17 15 23 23 C 1.52997 * 117.50003 * 250.96112 * 14 13 12 24 24 C 1.53003 * 117.50250 * 182.33568 * 14 13 12 25 25 H 1.08997 * 109.47242 * 300.00245 * 1 2 3 26 26 H 1.09007 * 109.47271 * 60.00210 * 1 2 3 27 27 H 1.08997 * 109.46803 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46993 * 240.00178 * 2 1 3 29 29 H 1.08996 * 109.46670 * 60.00154 * 3 2 1 30 30 H 1.09005 * 109.46909 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47035 * 299.99479 * 3 2 1 32 32 H 1.09001 * 109.47067 * 54.99744 * 4 2 1 33 33 H 1.09007 * 109.46642 * 295.00249 * 4 2 1 34 34 H 1.09009 * 117.51104 * 359.97438 * 7 5 4 35 35 H 1.09000 * 117.51285 * 214.95942 * 7 5 4 36 36 H 0.97001 * 120.00276 * 4.57777 * 12 10 8 37 37 H 1.09004 * 109.47410 * 66.19150 * 13 12 10 38 38 H 1.08999 * 109.47346 * 306.19081 * 13 12 10 39 39 H 0.97002 * 120.00091 * 179.97438 * 18 17 15 40 40 H 1.08995 * 117.50040 * 359.97438 * 23 14 13 41 41 H 1.09005 * 117.49986 * 145.01638 * 23 14 13 42 42 H 1.08996 * 117.49868 * 214.98006 * 24 14 13 43 43 H 1.09001 * 117.49664 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9930 -0.8800 0.1867 7 6 4.3702 -0.1013 2.2660 8 6 4.2608 -1.6272 2.2937 9 1 5.1466 -2.2002 2.0199 10 6 3.3919 -2.2428 3.3602 11 8 2.1864 -2.2551 3.2277 12 7 3.9546 -2.7794 4.4610 13 6 3.1197 -3.4665 5.4494 14 6 3.9716 -3.8427 6.6634 15 6 5.0298 -2.8418 7.0501 16 1 6.0238 -2.9195 6.6351 17 6 4.7290 -1.8270 7.9337 18 7 5.6880 -1.0623 8.4080 19 14 2.9592 -1.5383 8.4569 20 1 2.6849 -2.2869 9.7097 21 1 2.7421 -0.0878 8.6894 22 1 2.0435 -2.0106 7.3874 23 6 4.2907 -5.3246 6.8706 24 6 3.2904 -4.6216 7.7905 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.8137 0.4573 3.0187 35 1 5.3280 0.3293 1.9739 36 1 4.9123 -2.7108 4.5988 37 1 2.7003 -4.3696 5.0060 38 1 2.3110 -2.8066 5.7635 39 1 5.4763 -0.3481 9.0293 40 1 3.8935 -6.0316 6.1424 41 1 5.2664 -5.5759 7.2866 42 1 3.6080 -4.4104 8.8116 43 1 2.2353 -4.8656 7.6673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404049542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:35 Heat of formation + Delta-G solvation = -9.620590 kcal Electronic energy + Delta-G solvation = -20542.653362 eV Core-core repulsion = 17588.677075 eV Total energy + Delta-G solvation = -2953.976287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.70587 -37.59298 -36.61666 -34.81201 -33.31479 -32.18360 -27.71867 -27.10895 -26.65872 -25.43903 -23.08665 -21.68179 -21.07364 -20.03542 -19.59070 -18.83507 -16.56871 -16.42145 -15.47491 -15.02234 -14.95596 -14.70881 -14.19831 -13.83494 -13.57553 -13.36681 -12.86389 -12.75269 -12.46578 -12.32958 -12.26715 -12.13836 -11.95661 -11.40400 -11.19016 -11.02020 -10.80209 -10.64572 -10.60409 -10.53222 -10.16725 -9.90720 -9.79160 -9.73351 -9.22984 -8.95471 -8.65443 -8.60342 -8.10623 -6.21600 -4.25109 3.07520 3.26305 3.36625 3.42815 3.76658 4.09363 4.37164 4.66845 4.85039 4.99644 5.01441 5.06414 5.10408 5.21206 5.24344 5.54033 5.59702 5.65037 5.72803 5.77769 5.84208 5.86121 5.90811 5.99677 6.04904 6.08437 6.15753 6.17913 6.24307 6.28092 6.35772 6.44602 6.51421 6.54731 6.71414 6.76061 6.93168 7.08110 7.27915 7.66451 8.34319 8.36427 8.78705 8.92640 9.43250 10.89173 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.004889 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.942533 B = 5725.369441 C = 5925.537931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.077 4.077 5 C -0.116 4.116 6 H 0.106 0.894 7 C -0.153 4.153 8 C -0.187 4.187 9 H 0.121 0.879 10 C 0.533 3.467 11 O -0.557 6.557 12 N -0.693 5.693 13 C 0.150 3.850 14 C -0.016 4.016 15 C -0.494 4.494 16 H 0.078 0.922 17 C 0.086 3.914 18 N -0.891 5.891 19 Si 0.873 3.127 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.254 1.254 23 C -0.179 4.179 24 C -0.194 4.194 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.410 0.590 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.266 0.734 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 0.811 -13.966 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.114 4.114 5 C -0.135 4.135 6 H 0.124 0.876 7 C -0.191 4.191 8 C -0.208 4.208 9 H 0.139 0.861 10 C 0.319 3.681 11 O -0.437 6.437 12 N -0.343 5.343 13 C 0.026 3.974 14 C -0.017 4.017 15 C -0.531 4.531 16 H 0.096 0.904 17 C -0.118 4.118 18 N -0.527 5.527 19 Si 0.701 3.299 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.178 1.178 23 C -0.216 4.216 24 C -0.232 4.232 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.247 0.753 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.306 0.936 -13.904 14.911 hybrid contribution -0.265 0.231 0.671 0.757 sum -5.571 1.166 -13.233 14.405 Atomic orbital electron populations 1.21809 0.95607 1.01643 1.01235 1.21209 0.95461 0.96262 0.98746 1.21852 1.01185 0.96159 1.01084 1.21315 0.91626 1.01870 0.96574 1.22373 0.95592 1.01837 0.93689 0.87606 1.23073 1.02205 0.91907 1.01874 1.22277 1.02409 0.95822 1.00268 0.86146 1.19619 0.87931 0.78200 0.82359 1.90617 1.14799 1.59250 1.79053 1.45904 1.12724 1.55458 1.20170 1.21112 0.93034 0.94944 0.88348 1.19609 0.97720 0.91519 0.92821 1.20102 0.96096 1.09812 1.27093 0.90375 1.24920 0.96902 0.95258 0.94704 1.69907 1.32187 1.19875 1.30718 0.86962 0.86294 0.76917 0.79732 1.20405 1.22023 1.17814 1.22898 0.99656 0.96309 1.02746 1.22926 0.96203 1.07155 0.96927 0.92780 0.93249 0.92744 0.91749 0.92880 0.92491 0.93498 0.89701 0.91652 0.88382 0.88201 0.75333 0.93888 0.91725 0.92459 0.90914 0.89455 0.89233 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 37.15 0.34 -1.22 16 2 C -0.10 -1.09 2.88 -90.62 -0.26 -1.36 16 3 C -0.15 -1.49 9.01 37.16 0.33 -1.15 16 4 C -0.08 -1.06 3.27 -26.73 -0.09 -1.15 16 5 C -0.12 -1.48 4.73 -90.59 -0.43 -1.91 16 6 H 0.11 1.13 8.08 -51.92 -0.42 0.71 16 7 C -0.15 -2.03 9.88 -26.69 -0.26 -2.29 16 8 C -0.19 -2.71 6.19 -91.77 -0.57 -3.27 16 9 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 10 C 0.53 9.91 7.55 -10.98 -0.08 9.82 16 11 O -0.56 -11.66 13.19 5.55 0.07 -11.59 16 12 N -0.69 -13.56 5.27 -60.29 -0.32 -13.88 16 13 C 0.15 3.15 5.58 -4.04 -0.02 3.13 16 14 C -0.02 -0.34 1.21 -155.66 -0.19 -0.53 16 15 C -0.49 -12.69 7.94 -34.44 -0.27 -12.96 16 16 H 0.08 2.15 8.05 -52.49 -0.42 1.73 16 17 C 0.09 2.34 5.46 -17.82 -0.10 2.25 16 18 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 19 Si 0.87 21.35 25.43 -169.99 -4.32 17.02 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.25 -6.05 5.09 56.52 0.29 -5.77 16 23 C -0.18 -3.47 9.88 -26.73 -0.26 -3.74 16 24 C -0.19 -4.01 7.78 -26.73 -0.21 -4.22 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 1.36 6.66 -51.93 -0.35 1.01 16 33 H 0.06 1.04 7.55 -51.93 -0.39 0.65 16 34 H 0.10 1.45 8.04 -51.92 -0.42 1.03 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.41 7.86 7.46 -40.82 -0.30 7.55 16 37 H 0.04 0.85 7.92 -51.93 -0.41 0.44 16 38 H 0.06 1.50 5.99 -51.93 -0.31 1.19 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.07 1.25 8.06 -51.93 -0.42 0.84 16 41 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 42 H 0.09 1.95 7.48 -51.93 -0.39 1.56 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -28.85 340.09 -8.43 -37.28 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.69 Total: 9.71 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -2.07 Total: -18.61 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.46 Total: -38.94 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.07 Total: -11.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.32 Total: 17.02 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.85 -8.43 -37.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404049542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.658 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds