Wall clock time and date at job start Mon Mar 30 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46962 * 2 1 4 4 C 1.53002 * 109.47426 * 120.00030 * 2 1 3 5 5 C 1.52991 * 109.47505 * 175.00103 * 4 2 1 6 6 H 1.09007 * 115.56191 * 330.69243 * 5 4 2 7 7 C 1.53077 * 117.51630 * 116.39173 * 5 4 2 8 8 C 1.52998 * 117.50221 * 185.00117 * 5 4 2 9 9 H 1.08996 * 117.50084 * 145.00078 * 8 5 4 10 10 C 1.50705 * 117.49667 * 359.97438 * 8 5 4 11 11 O 1.21285 * 119.99559 * 9.98493 * 10 8 5 12 12 N 1.34773 * 119.99864 * 189.98447 * 10 8 5 13 13 C 1.46495 * 119.99744 * 184.57901 * 12 10 8 14 14 C 1.53002 * 109.47376 * 186.18853 * 13 12 10 15 15 C 1.50700 * 115.54870 * 36.66685 * 14 13 12 16 16 H 1.07994 * 119.99885 * 269.29439 * 15 14 13 17 17 C 1.37883 * 119.99987 * 89.29180 * 15 14 13 18 18 N 1.31509 * 119.99927 * 171.01921 * 17 15 14 19 19 Si 1.86796 * 119.99857 * 351.01628 * 17 15 14 20 20 H 1.48500 * 109.47392 * 93.03275 * 19 17 15 21 21 H 1.48503 * 109.46999 * 213.03153 * 19 17 15 22 22 H 1.48502 * 109.47168 * 333.03017 * 19 17 15 23 23 C 1.52997 * 117.50003 * 250.96112 * 14 13 12 24 24 C 1.53003 * 117.50250 * 182.33568 * 14 13 12 25 25 H 1.08997 * 109.47242 * 300.00245 * 1 2 3 26 26 H 1.09007 * 109.47271 * 60.00210 * 1 2 3 27 27 H 1.08997 * 109.46803 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46993 * 240.00178 * 2 1 3 29 29 H 1.08996 * 109.46670 * 60.00154 * 3 2 1 30 30 H 1.09005 * 109.46909 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47035 * 299.99479 * 3 2 1 32 32 H 1.09001 * 109.47067 * 54.99744 * 4 2 1 33 33 H 1.09007 * 109.46642 * 295.00249 * 4 2 1 34 34 H 1.09009 * 117.51104 * 359.97438 * 7 5 4 35 35 H 1.09000 * 117.51285 * 214.95942 * 7 5 4 36 36 H 0.97001 * 120.00276 * 4.57777 * 12 10 8 37 37 H 1.09004 * 109.47410 * 66.19150 * 13 12 10 38 38 H 1.08999 * 109.47346 * 306.19081 * 13 12 10 39 39 H 0.97002 * 120.00091 * 179.97438 * 18 17 15 40 40 H 1.08995 * 117.50040 * 359.97438 * 23 14 13 41 41 H 1.09005 * 117.49986 * 145.01638 * 23 14 13 42 42 H 1.08996 * 117.49868 * 214.98006 * 24 14 13 43 43 H 1.09001 * 117.49664 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9930 -0.8800 0.1867 7 6 4.3702 -0.1013 2.2660 8 6 4.2608 -1.6272 2.2937 9 1 5.1466 -2.2002 2.0199 10 6 3.3919 -2.2428 3.3602 11 8 2.1864 -2.2551 3.2277 12 7 3.9546 -2.7794 4.4610 13 6 3.1197 -3.4665 5.4494 14 6 3.9716 -3.8427 6.6634 15 6 5.0298 -2.8418 7.0501 16 1 6.0238 -2.9195 6.6351 17 6 4.7290 -1.8270 7.9337 18 7 5.6880 -1.0623 8.4080 19 14 2.9592 -1.5383 8.4569 20 1 2.6849 -2.2869 9.7097 21 1 2.7421 -0.0878 8.6894 22 1 2.0435 -2.0106 7.3874 23 6 4.2907 -5.3246 6.8706 24 6 3.2904 -4.6216 7.7905 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.8137 0.4573 3.0187 35 1 5.3280 0.3293 1.9739 36 1 4.9123 -2.7108 4.5988 37 1 2.7003 -4.3696 5.0060 38 1 2.3110 -2.8066 5.7635 39 1 5.4763 -0.3481 9.0293 40 1 3.8935 -6.0316 6.1424 41 1 5.2664 -5.5759 7.2866 42 1 3.6080 -4.4104 8.8116 43 1 2.2353 -4.8656 7.6673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404049542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:35 Heat of formation + Delta-G solvation = -25.883940 kcal Electronic energy + Delta-G solvation = -20543.358593 eV Core-core repulsion = 17588.677075 eV Total energy + Delta-G solvation = -2954.681518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08044 -39.09043 -37.98941 -35.82955 -34.89989 -34.25249 -29.03906 -28.09240 -27.94016 -27.31617 -24.41179 -23.30756 -22.12648 -21.28097 -21.00657 -20.39444 -18.36172 -17.82889 -17.08238 -16.53980 -16.39777 -15.92759 -15.61645 -15.29635 -14.82577 -14.64386 -14.48610 -14.16825 -14.04956 -14.02784 -13.40587 -13.18452 -13.12280 -12.88977 -12.56677 -12.36518 -12.16783 -12.02384 -11.97061 -11.71868 -11.64121 -11.54612 -11.02841 -10.95000 -10.90848 -10.71103 -10.46238 -10.25141 -9.73705 -8.33344 -6.36907 1.28877 1.35986 1.45325 1.67146 2.33152 2.37247 2.90720 3.02149 3.21433 3.63189 3.91062 3.98528 4.05804 4.14302 4.16626 4.25090 4.34334 4.39711 4.41167 4.60374 4.61889 4.80901 4.83168 4.85817 4.88386 4.89380 4.92093 5.00695 5.06862 5.08359 5.12953 5.22879 5.26038 5.33146 5.46269 5.48369 5.54090 5.62498 5.68022 5.76042 6.27658 6.69829 6.82922 7.33347 7.42575 8.80774 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.004889 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.942533 B = 5725.369441 C = 5925.537931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.073 4.073 5 C -0.103 4.103 6 H 0.139 0.861 7 C -0.149 4.149 8 C -0.199 4.199 9 H 0.147 0.853 10 C 0.527 3.473 11 O -0.585 6.585 12 N -0.698 5.698 13 C 0.158 3.842 14 C -0.040 4.040 15 C -0.477 4.477 16 H 0.051 0.949 17 C 0.040 3.960 18 N -0.936 5.936 19 Si 0.917 3.083 20 H -0.268 1.268 21 H -0.303 1.303 22 H -0.246 1.246 23 C -0.154 4.154 24 C -0.195 4.195 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.411 0.589 37 H 0.059 0.941 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 0.088 -15.987 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.110 4.110 5 C -0.121 4.121 6 H 0.157 0.843 7 C -0.187 4.187 8 C -0.220 4.220 9 H 0.164 0.836 10 C 0.314 3.686 11 O -0.467 6.467 12 N -0.348 5.348 13 C 0.034 3.966 14 C -0.041 4.041 15 C -0.515 4.515 16 H 0.069 0.931 17 C -0.160 4.160 18 N -0.575 5.575 19 Si 0.744 3.256 20 H -0.194 1.194 21 H -0.231 1.231 22 H -0.170 1.170 23 C -0.191 4.191 24 C -0.232 4.232 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.247 0.753 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.597 0.193 -15.932 16.888 hybrid contribution -0.161 0.413 1.273 1.348 sum -5.758 0.606 -14.659 15.761 Atomic orbital electron populations 1.21822 0.95565 1.01412 1.01586 1.21185 0.95564 0.96740 0.97727 1.21830 1.01584 0.95342 1.01285 1.21196 0.92707 1.00285 0.96835 1.22517 0.94682 1.00164 0.94733 0.84314 1.23135 1.03353 0.90695 1.01474 1.22348 1.03088 0.96654 0.99914 0.83554 1.20351 0.88102 0.77463 0.82638 1.90610 1.16267 1.60126 1.79648 1.45957 1.12586 1.55846 1.20401 1.20926 0.92340 0.95086 0.88296 1.19517 0.98002 0.92410 0.94168 1.20240 0.95904 1.09906 1.25417 0.93089 1.25519 0.99483 0.95533 0.95420 1.70011 1.33847 1.21166 1.32470 0.86247 0.83170 0.76235 0.79949 1.19380 1.23067 1.16957 1.22939 0.99354 0.94629 1.02203 1.22973 0.97809 1.06642 0.95814 0.94003 0.91313 0.93304 0.90071 0.94149 0.91828 0.91841 0.92170 0.94715 0.90714 0.85323 0.75252 0.92306 0.94208 0.92651 0.87833 0.89730 0.90614 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.19 71.98 0.66 -2.33 16 2 C -0.09 -1.93 2.88 -10.79 -0.03 -1.96 16 3 C -0.14 -2.62 9.01 71.99 0.65 -1.97 16 4 C -0.07 -1.98 3.27 30.59 0.10 -1.88 16 5 C -0.10 -2.40 4.73 -10.77 -0.05 -2.45 16 6 H 0.14 2.39 8.08 -2.38 -0.02 2.37 16 7 C -0.15 -3.71 9.88 30.62 0.30 -3.41 16 8 C -0.20 -5.46 6.19 -11.54 -0.07 -5.53 16 9 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 10 C 0.53 19.42 7.55 87.66 0.66 20.08 16 11 O -0.58 -24.73 13.19 -3.05 -0.04 -24.77 16 12 N -0.70 -27.07 5.27 -463.06 -2.44 -29.51 16 13 C 0.16 6.50 5.58 86.38 0.48 6.98 16 14 C -0.04 -1.71 1.21 -52.93 -0.06 -1.77 16 15 C -0.48 -24.68 7.94 25.60 0.20 -24.48 16 16 H 0.05 2.87 8.05 -2.91 -0.02 2.84 16 17 C 0.04 2.19 5.46 84.66 0.46 2.65 16 18 N -0.94 -55.63 13.96 21.45 0.30 -55.33 16 19 Si 0.92 44.30 25.43 68.60 1.74 46.05 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 22 H -0.25 -11.46 5.09 99.48 0.51 -10.96 16 23 C -0.15 -5.59 9.88 30.59 0.30 -5.29 16 24 C -0.19 -7.63 7.78 30.60 0.24 -7.39 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.08 7.38 -2.38 -0.02 1.06 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.94 6.66 -2.39 -0.02 1.93 16 33 H 0.03 1.13 7.55 -2.38 -0.02 1.12 16 34 H 0.07 2.22 8.04 -2.38 -0.02 2.20 16 35 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.41 15.68 7.46 -92.71 -0.69 14.99 16 37 H 0.06 2.22 7.92 -2.38 -0.02 2.20 16 38 H 0.04 1.83 5.99 -2.39 -0.01 1.81 16 39 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.10 3.15 8.06 -2.39 -0.02 3.13 16 41 H 0.08 3.12 8.14 -2.38 -0.02 3.11 16 42 H 0.08 3.18 7.48 -2.39 -0.02 3.17 16 43 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -63.46 340.09 3.49 -59.97 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.08 Total: 32.33 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.84 Total: -28.74 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.14 Total: -84.83 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.04 Total: -24.77 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.74 Total: 46.05 kcal Total: -63.46 3.49 -59.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404049542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.089 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds