Wall clock time and date at job start Mon Mar 30 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 C 1.53000 * 109.47276 * 120.00738 * 2 1 3 5 5 C 1.52992 * 109.47529 * 64.99508 * 4 2 1 6 6 H 1.09004 * 115.55049 * 330.59022 * 5 4 2 7 7 C 1.52997 * 117.50086 * 116.25544 * 5 4 2 8 8 C 1.52996 * 117.50145 * 184.91793 * 5 4 2 9 9 H 1.09005 * 117.49959 * 0.02562 * 8 5 4 10 10 C 1.50699 * 117.50188 * 145.02351 * 8 5 4 11 11 O 1.21274 * 120.00237 * 359.97438 * 10 8 5 12 12 N 1.34776 * 120.00148 * 180.02562 * 10 8 5 13 13 C 1.46497 * 120.00148 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47185 * 178.27863 * 13 12 10 15 15 C 1.50704 * 115.55290 * 65.14310 * 14 13 12 16 16 H 1.08005 * 119.99605 * 265.40963 * 15 14 13 17 17 C 1.37869 * 120.00160 * 85.39907 * 15 14 13 18 18 N 1.31512 * 119.99977 * 353.56200 * 17 15 14 19 19 Si 1.86800 * 120.00197 * 173.55622 * 17 15 14 20 20 H 1.48500 * 109.46883 * 90.00152 * 19 17 15 21 21 H 1.48499 * 109.47405 * 210.00134 * 19 17 15 22 22 H 1.48497 * 109.47151 * 330.00752 * 19 17 15 23 23 C 1.52999 * 117.50106 * 279.47202 * 14 13 12 24 24 C 1.53001 * 117.50005 * 210.80992 * 14 13 12 25 25 H 1.08999 * 109.47270 * 59.99973 * 1 2 3 26 26 H 1.09005 * 109.46945 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47157 * 299.99780 * 1 2 3 28 28 H 1.09003 * 109.46700 * 240.00233 * 2 1 3 29 29 H 1.08995 * 109.47127 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47011 * 300.00186 * 3 2 1 31 31 H 1.08997 * 109.46422 * 60.00334 * 3 2 1 32 32 H 1.09005 * 109.46662 * 304.99501 * 4 2 1 33 33 H 1.08998 * 109.47049 * 185.00266 * 4 2 1 34 34 H 1.09001 * 117.50419 * 214.98286 * 7 5 4 35 35 H 1.09010 * 117.49582 * 359.97438 * 7 5 4 36 36 H 0.97005 * 119.99914 * 359.97438 * 12 10 8 37 37 H 1.08997 * 109.47320 * 298.27621 * 13 12 10 38 38 H 1.09003 * 109.47324 * 58.28329 * 13 12 10 39 39 H 0.97004 * 119.99835 * 185.06549 * 18 17 15 40 40 H 1.09001 * 117.49705 * 359.97438 * 23 14 13 41 41 H 1.09000 * 117.50374 * 145.01953 * 23 14 13 42 42 H 1.08998 * 117.50132 * 214.97907 * 24 14 13 43 43 H 1.09001 * 117.49976 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6353 -2.1955 1.1878 6 1 0.7152 -2.4082 0.6434 7 6 2.7567 -3.2335 1.1122 8 6 1.9535 -3.0668 2.4046 9 1 2.4510 -2.5896 3.2490 10 6 0.9713 -4.1535 2.7584 11 8 -0.0268 -4.3106 2.0877 12 7 1.2016 -4.9503 3.8207 13 6 0.2465 -6.0064 4.1650 14 6 0.7627 -6.7859 5.3761 15 6 0.8553 -6.0040 6.6611 16 1 1.7877 -5.5377 6.9434 17 6 -0.2501 -5.8837 7.4761 18 7 -1.4159 -6.3413 7.0747 19 14 -0.0920 -5.0711 9.1506 20 1 -0.3396 -3.6128 9.0184 21 1 -1.0873 -5.6596 10.0825 22 1 1.2764 -5.2946 9.6821 23 6 1.8224 -7.8606 5.1252 24 6 0.3884 -8.2661 5.4754 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6055 -0.2619 2.1369 33 1 3.1264 -0.6444 1.2950 34 1 2.5744 -4.1292 0.5184 35 1 3.7830 -2.8661 1.1057 36 1 1.9998 -4.8244 4.3574 37 1 -0.7184 -5.5597 4.4048 38 1 0.1330 -6.6837 3.3185 39 1 -2.2077 -6.1918 7.6149 40 1 2.1515 -8.0126 4.0973 41 1 2.5863 -8.0024 5.8897 42 1 0.2096 -8.6744 6.4701 43 1 -0.2259 -8.6845 4.6781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404049544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:38 Heat of formation + Delta-G solvation = -19.175469 kcal Electronic energy + Delta-G solvation = -19975.303982 eV Core-core repulsion = 17020.913365 eV Total energy + Delta-G solvation = -2954.390617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.55668 -37.60095 -36.56968 -34.89730 -33.21286 -31.97835 -27.88880 -27.26426 -26.50123 -25.34422 -23.03248 -21.34840 -21.12286 -19.85933 -19.59489 -19.05610 -16.97764 -16.11386 -15.30242 -15.20866 -14.75831 -14.56753 -14.25363 -14.04130 -13.79184 -13.30838 -12.97285 -12.64643 -12.56923 -12.28279 -11.98337 -11.79260 -11.67527 -11.58605 -11.09964 -11.00793 -10.94057 -10.90901 -10.65093 -10.53635 -10.28089 -10.11492 -9.90254 -9.65932 -9.24607 -8.96963 -8.50515 -8.27404 -8.06046 -6.08629 -4.17466 3.02565 3.25010 3.32956 3.34739 3.78811 4.04334 4.34574 4.63121 4.76522 4.80508 5.02659 5.05232 5.16508 5.19772 5.33132 5.36241 5.49960 5.53057 5.60297 5.67704 5.75082 5.78438 5.80613 5.92771 6.00948 6.06598 6.09854 6.17484 6.29859 6.33416 6.45248 6.47451 6.56833 6.68784 6.89493 7.08700 7.30890 7.43118 7.48370 7.80477 8.32906 8.35229 8.83061 8.93604 9.49456 10.99210 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.004068 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.792299 B = 6881.216199 C = 7507.238754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.085 4.085 5 C -0.121 4.121 6 H 0.119 0.881 7 C -0.152 4.152 8 C -0.185 4.185 9 H 0.120 0.880 10 C 0.532 3.468 11 O -0.560 6.560 12 N -0.699 5.699 13 C 0.163 3.837 14 C 0.028 3.972 15 C -0.501 4.501 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.210 4.210 24 C -0.148 4.148 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.401 0.599 37 H 0.072 0.928 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 9.979 -11.009 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.122 4.122 5 C -0.140 4.140 6 H 0.137 0.863 7 C -0.190 4.190 8 C -0.206 4.206 9 H 0.138 0.862 10 C 0.317 3.683 11 O -0.440 6.440 12 N -0.346 5.346 13 C 0.040 3.960 14 C 0.027 3.973 15 C -0.539 4.539 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.112 9.754 -11.363 16.578 hybrid contribution 0.308 0.391 1.386 1.473 sum 7.420 10.145 -9.977 16.047 Atomic orbital electron populations 1.21918 0.95116 1.02416 1.01429 1.21065 0.96104 0.95704 0.98320 1.21847 1.00751 0.96196 1.01679 1.21276 1.00356 0.92458 0.98158 1.22458 1.00351 0.91684 0.99493 0.86314 1.23061 0.96390 1.01542 0.97990 1.22350 1.02967 1.01193 0.94087 0.86209 1.19556 0.85945 0.81893 0.80877 1.90635 1.29122 1.71755 1.52451 1.45907 1.26263 1.33655 1.28780 1.20992 0.92306 0.87829 0.94857 1.19028 0.96745 0.87686 0.93802 1.20341 0.97072 1.33799 1.02681 0.92196 1.24985 0.95414 0.94800 0.97822 1.69978 0.98527 1.44219 1.38291 0.86630 0.77992 0.79440 0.84204 1.20654 1.21137 1.19796 1.23022 0.93008 1.09586 0.99159 1.22493 0.95155 1.00415 1.00579 0.93072 0.91936 0.92691 0.91143 0.92846 0.92844 0.92706 0.91358 0.91759 0.88561 0.88226 0.76559 0.91005 0.94588 0.92834 0.91667 0.90343 0.89813 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.01 37.16 0.33 -1.17 16 2 C -0.09 -0.86 2.92 -90.62 -0.26 -1.12 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C -0.09 -0.86 4.96 -26.73 -0.13 -1.00 16 5 C -0.12 -1.53 5.03 -90.63 -0.46 -1.99 16 6 H 0.12 1.72 5.91 -51.93 -0.31 1.41 16 7 C -0.15 -1.80 9.88 -26.69 -0.26 -2.07 16 8 C -0.18 -2.64 5.91 -91.74 -0.54 -3.18 16 9 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 10 C 0.53 10.19 7.61 -10.99 -0.08 10.11 16 11 O -0.56 -12.72 16.26 5.56 0.09 -12.63 16 12 N -0.70 -13.86 5.47 -60.30 -0.33 -14.19 16 13 C 0.16 3.77 5.50 -4.04 -0.02 3.75 16 14 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 15 C -0.50 -12.93 8.63 -34.44 -0.30 -13.23 16 16 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 17 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 18 N -0.87 -24.38 12.91 55.43 0.72 -23.66 16 19 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 24 C -0.15 -3.41 9.42 -26.69 -0.25 -3.66 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.71 6.41 -51.93 -0.33 0.37 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 0.94 8.03 -51.92 -0.42 0.53 16 36 H 0.40 7.26 8.37 -40.82 -0.34 6.91 16 37 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 38 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -29.15 355.11 -9.10 -38.25 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.69 Total: 8.06 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.21 Total: -16.72 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.39 Total: -37.85 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.15 -9.10 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404049544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.076 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds