Wall clock time and date at job start Mon Mar 30 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 C 1.53000 * 109.47276 * 120.00738 * 2 1 3 5 5 C 1.52992 * 109.47529 * 64.99508 * 4 2 1 6 6 H 1.09004 * 115.55049 * 330.59022 * 5 4 2 7 7 C 1.52997 * 117.50086 * 116.25544 * 5 4 2 8 8 C 1.52996 * 117.50145 * 184.91793 * 5 4 2 9 9 H 1.09005 * 117.49959 * 0.02562 * 8 5 4 10 10 C 1.50699 * 117.50188 * 145.02351 * 8 5 4 11 11 O 1.21274 * 120.00237 * 359.97438 * 10 8 5 12 12 N 1.34776 * 120.00148 * 180.02562 * 10 8 5 13 13 C 1.46497 * 120.00148 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47185 * 178.27863 * 13 12 10 15 15 C 1.50704 * 115.55290 * 65.14310 * 14 13 12 16 16 H 1.08005 * 119.99605 * 265.40963 * 15 14 13 17 17 C 1.37869 * 120.00160 * 85.39907 * 15 14 13 18 18 N 1.31512 * 119.99977 * 353.56200 * 17 15 14 19 19 Si 1.86800 * 120.00197 * 173.55622 * 17 15 14 20 20 H 1.48500 * 109.46883 * 90.00152 * 19 17 15 21 21 H 1.48499 * 109.47405 * 210.00134 * 19 17 15 22 22 H 1.48497 * 109.47151 * 330.00752 * 19 17 15 23 23 C 1.52999 * 117.50106 * 279.47202 * 14 13 12 24 24 C 1.53001 * 117.50005 * 210.80992 * 14 13 12 25 25 H 1.08999 * 109.47270 * 59.99973 * 1 2 3 26 26 H 1.09005 * 109.46945 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47157 * 299.99780 * 1 2 3 28 28 H 1.09003 * 109.46700 * 240.00233 * 2 1 3 29 29 H 1.08995 * 109.47127 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47011 * 300.00186 * 3 2 1 31 31 H 1.08997 * 109.46422 * 60.00334 * 3 2 1 32 32 H 1.09005 * 109.46662 * 304.99501 * 4 2 1 33 33 H 1.08998 * 109.47049 * 185.00266 * 4 2 1 34 34 H 1.09001 * 117.50419 * 214.98286 * 7 5 4 35 35 H 1.09010 * 117.49582 * 359.97438 * 7 5 4 36 36 H 0.97005 * 119.99914 * 359.97438 * 12 10 8 37 37 H 1.08997 * 109.47320 * 298.27621 * 13 12 10 38 38 H 1.09003 * 109.47324 * 58.28329 * 13 12 10 39 39 H 0.97004 * 119.99835 * 185.06549 * 18 17 15 40 40 H 1.09001 * 117.49705 * 359.97438 * 23 14 13 41 41 H 1.09000 * 117.50374 * 145.01953 * 23 14 13 42 42 H 1.08998 * 117.50132 * 214.97907 * 24 14 13 43 43 H 1.09001 * 117.49976 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6353 -2.1955 1.1878 6 1 0.7152 -2.4082 0.6434 7 6 2.7567 -3.2335 1.1122 8 6 1.9535 -3.0668 2.4046 9 1 2.4510 -2.5896 3.2490 10 6 0.9713 -4.1535 2.7584 11 8 -0.0268 -4.3106 2.0877 12 7 1.2016 -4.9503 3.8207 13 6 0.2465 -6.0064 4.1650 14 6 0.7627 -6.7859 5.3761 15 6 0.8553 -6.0040 6.6611 16 1 1.7877 -5.5377 6.9434 17 6 -0.2501 -5.8837 7.4761 18 7 -1.4159 -6.3413 7.0747 19 14 -0.0920 -5.0711 9.1506 20 1 -0.3396 -3.6128 9.0184 21 1 -1.0873 -5.6596 10.0825 22 1 1.2764 -5.2946 9.6821 23 6 1.8224 -7.8606 5.1252 24 6 0.3884 -8.2661 5.4754 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6055 -0.2619 2.1369 33 1 3.1264 -0.6444 1.2950 34 1 2.5744 -4.1292 0.5184 35 1 3.7830 -2.8661 1.1057 36 1 1.9998 -4.8244 4.3574 37 1 -0.7184 -5.5597 4.4048 38 1 0.1330 -6.6837 3.3185 39 1 -2.2077 -6.1918 7.6149 40 1 2.1515 -8.0126 4.0973 41 1 2.5863 -8.0024 5.8897 42 1 0.2096 -8.6744 6.4701 43 1 -0.2259 -8.6845 4.6781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404049544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:37 Heat of formation + Delta-G solvation = -34.730589 kcal Electronic energy + Delta-G solvation = -19975.978503 eV Core-core repulsion = 17020.913365 eV Total energy + Delta-G solvation = -2955.065138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97810 -38.92982 -38.12592 -35.83084 -34.92683 -33.98002 -29.02039 -28.04728 -27.94955 -27.23209 -24.35632 -22.97015 -22.20931 -21.35693 -20.69531 -20.61743 -18.47906 -17.85213 -16.76735 -16.64747 -16.29251 -16.05093 -15.62006 -15.25786 -14.95670 -14.70272 -14.42652 -13.90281 -13.68976 -13.51475 -13.38125 -13.05898 -12.94705 -12.90119 -12.84618 -12.49153 -12.35152 -12.06346 -11.95117 -11.65966 -11.52286 -11.44484 -11.12223 -10.94342 -10.86659 -10.76470 -10.46936 -10.06423 -9.83757 -8.11036 -6.24663 1.41578 1.44182 1.52798 1.59760 2.33159 2.42553 2.91703 3.17200 3.45882 3.70984 3.80134 3.92937 4.11973 4.16937 4.22030 4.29059 4.36281 4.50740 4.53290 4.62592 4.70554 4.79410 4.84858 4.87152 4.95041 4.97609 4.98283 5.01743 5.06751 5.13811 5.18363 5.24955 5.30235 5.43478 5.54131 5.56150 5.57272 5.59170 5.67700 5.76749 6.35128 6.77382 6.83907 7.39116 7.45313 8.96609 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.004068 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.792299 B = 6881.216199 C = 7507.238754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.120 4.120 6 H 0.093 0.907 7 C -0.129 4.129 8 C -0.198 4.198 9 H 0.143 0.857 10 C 0.526 3.474 11 O -0.603 6.603 12 N -0.695 5.695 13 C 0.179 3.821 14 C 0.006 3.994 15 C -0.506 4.506 16 H 0.065 0.935 17 C 0.024 3.976 18 N -0.909 5.909 19 Si 0.951 3.049 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.262 1.262 23 C -0.175 4.175 24 C -0.160 4.160 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.411 0.589 37 H 0.026 0.974 38 H 0.033 0.967 39 H 0.259 0.741 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.868 11.322 -11.311 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.116 4.116 5 C -0.139 4.139 6 H 0.111 0.889 7 C -0.166 4.166 8 C -0.219 4.219 9 H 0.161 0.839 10 C 0.314 3.686 11 O -0.486 6.486 12 N -0.343 5.343 13 C 0.055 3.945 14 C 0.005 3.995 15 C -0.544 4.544 16 H 0.083 0.917 17 C -0.177 4.177 18 N -0.547 5.547 19 Si 0.777 3.223 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.186 1.186 23 C -0.212 4.212 24 C -0.199 4.199 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.154 0.846 36 H 0.247 0.753 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.988 11.106 -11.658 18.947 hybrid contribution -0.604 -0.050 1.417 1.541 sum 9.384 11.056 -10.241 17.753 Atomic orbital electron populations 1.21928 0.96230 1.01128 1.01734 1.21060 0.95151 0.96745 0.98070 1.21814 1.01445 0.94938 1.01934 1.21282 1.01673 0.90375 0.98319 1.22499 1.00059 0.93510 0.97844 0.88869 1.23205 0.97745 1.00698 0.94945 1.22324 1.03181 1.00410 0.95968 0.83935 1.20447 0.86165 0.82209 0.79736 1.90612 1.31257 1.73017 1.53713 1.45817 1.25949 1.33232 1.29317 1.20548 0.91134 0.88258 0.94585 1.19044 0.99142 0.87944 0.93351 1.20674 0.97008 1.33384 1.03293 0.91685 1.25729 0.95209 0.95682 1.01071 1.70112 0.99125 1.45912 1.39509 0.85662 0.78178 0.78287 0.80172 1.20565 1.21553 1.18605 1.23009 0.91737 1.05769 1.00689 1.22437 0.97421 1.00181 0.99834 0.92019 0.93997 0.93171 0.90769 0.91689 0.92244 0.92873 0.91901 0.89498 0.89503 0.84584 0.75342 0.95550 0.94918 0.93229 0.89364 0.89378 0.91721 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.01 71.98 0.65 -2.33 16 2 C -0.09 -1.51 2.92 -10.79 -0.03 -1.54 16 3 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 4 C -0.08 -1.41 4.96 30.59 0.15 -1.26 16 5 C -0.12 -2.87 5.03 -10.80 -0.05 -2.93 16 6 H 0.09 2.75 5.91 -2.38 -0.01 2.74 16 7 C -0.13 -2.69 9.88 30.62 0.30 -2.38 16 8 C -0.20 -5.33 5.91 -11.52 -0.07 -5.39 16 9 H 0.14 3.19 8.14 -2.38 -0.02 3.17 16 10 C 0.53 20.25 7.61 87.66 0.67 20.92 16 11 O -0.60 -28.37 16.26 -3.01 -0.05 -28.42 16 12 N -0.69 -27.50 5.47 -463.08 -2.54 -30.04 16 13 C 0.18 8.46 5.50 86.38 0.48 8.94 16 14 C 0.01 0.28 1.38 -52.93 -0.07 0.21 16 15 C -0.51 -25.95 8.63 25.60 0.22 -25.73 16 16 H 0.07 3.20 7.82 -2.91 -0.02 3.17 16 17 C 0.02 1.27 5.39 84.65 0.46 1.72 16 18 N -0.91 -52.00 12.91 21.44 0.28 -51.72 16 19 Si 0.95 42.28 29.55 68.60 2.03 44.30 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 23 C -0.17 -6.98 9.96 30.62 0.30 -6.68 16 24 C -0.16 -7.40 9.42 30.62 0.29 -7.11 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.98 6.41 -2.38 -0.02 0.96 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.09 1.19 7.88 -2.39 -0.02 1.17 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.14 1.90 8.03 -2.38 -0.02 1.88 16 36 H 0.41 14.40 8.37 -92.70 -0.78 13.62 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.03 1.53 8.09 -2.39 -0.02 1.52 16 39 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 40 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -64.44 355.11 3.86 -60.57 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.19 Total: 30.10 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 3.95 Total: -24.80 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -2.26 Total: -81.76 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -64.44 3.86 -60.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404049544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.843 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds