Wall clock time and date at job start Mon Mar 30 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47238 * 2 1 4 4 C 1.52998 * 109.47154 * 120.00320 * 2 1 3 5 5 C 1.50693 * 109.46932 * 299.99943 * 4 2 1 6 6 O 1.21276 * 120.00285 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99974 * 180.02562 * 5 4 2 8 8 C 1.47423 * 125.64708 * 359.96859 * 7 5 4 9 9 C 1.54909 * 104.83351 * 155.90981 * 8 7 5 10 10 C 1.55158 * 101.61642 * 36.99324 * 9 8 7 11 11 H 1.08999 * 110.72042 * 82.87870 * 10 9 8 12 12 C 1.50695 * 110.72412 * 206.15548 * 10 9 8 13 13 H 1.08003 * 120.00393 * 118.54262 * 12 10 9 14 14 C 1.37880 * 119.99858 * 298.54782 * 12 10 9 15 15 N 1.31509 * 119.99863 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99990 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47231 * 89.99871 * 16 14 12 18 18 H 1.48502 * 109.46987 * 209.99697 * 16 14 12 19 19 H 1.48503 * 109.47083 * 329.99487 * 16 14 12 20 20 C 1.47016 * 125.64850 * 180.02562 * 7 5 4 21 21 C 1.53000 * 109.46738 * 240.00252 * 2 1 3 22 22 C 1.53002 * 117.50059 * 128.74962 * 21 2 1 23 23 C 1.53001 * 117.50086 * 60.08973 * 21 2 1 24 24 H 1.08996 * 109.46712 * 299.99696 * 1 2 3 25 25 H 1.08996 * 109.47204 * 59.99816 * 1 2 3 26 26 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47621 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47430 * 300.00317 * 3 2 1 29 29 H 1.09007 * 109.47383 * 60.00189 * 3 2 1 30 30 H 1.09002 * 109.47074 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.46966 * 59.99802 * 4 2 1 32 32 H 1.09000 * 110.36544 * 37.07402 * 8 7 5 33 33 H 1.09002 * 110.46474 * 274.79752 * 8 7 5 34 34 H 1.09002 * 111.00594 * 155.08642 * 9 8 7 35 35 H 1.09002 * 111.00655 * 278.89906 * 9 8 7 36 36 H 0.97003 * 120.00226 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.88531 * 300.42930 * 20 7 5 38 38 H 1.08996 * 109.88671 * 61.44743 * 20 7 5 39 39 H 1.08997 * 115.55044 * 274.41125 * 21 2 1 40 40 H 1.09005 * 117.49647 * 359.97438 * 22 21 2 41 41 H 1.08993 * 117.50431 * 145.01418 * 22 21 2 42 42 H 1.09001 * 117.49520 * 214.97605 * 23 21 2 43 43 H 1.08999 * 117.49971 * 359.97296 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5377 -0.0110 2.4796 6 8 0.8401 0.9748 2.3684 7 7 1.8638 -0.4712 3.7037 8 6 2.6995 -1.6532 3.9828 9 6 3.2746 -1.4067 5.3999 10 6 2.0757 -0.7231 6.1090 11 1 1.3686 -1.4676 6.4750 12 6 2.5536 0.1587 7.2337 13 1 2.3559 1.2202 7.2090 14 6 3.2433 -0.3896 8.2942 15 7 3.4836 -1.6822 8.3245 16 14 3.8363 0.7036 9.6880 17 1 2.7861 0.7847 10.7347 18 1 5.0753 0.1311 10.2733 19 1 4.1192 2.0640 9.1640 20 6 1.4439 0.1217 4.9819 21 6 2.0400 -0.7212 -1.2493 22 6 3.0763 0.0039 -2.1102 23 6 1.6374 -0.1482 -2.6096 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2491 32 1 3.5063 -1.7279 3.2537 33 1 2.0938 -2.5594 3.9715 34 1 3.5315 -2.3476 5.8864 35 1 4.1369 -0.7411 5.3613 36 1 3.9685 -2.0680 9.0708 37 1 1.7984 1.1504 5.0476 38 1 0.3572 0.0984 5.0621 39 1 2.1253 -1.8045 -1.1648 40 1 3.3945 0.9951 -1.7867 41 1 3.8431 -0.6023 -2.5923 42 1 1.4582 -0.8546 -3.4202 43 1 1.0089 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405789730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:57 Heat of formation + Delta-G solvation = -23.335705 kcal Electronic energy + Delta-G solvation = -20754.648343 eV Core-core repulsion = 17800.077325 eV Total energy + Delta-G solvation = -2954.571019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.08877 -38.42411 -36.70539 -33.44011 -33.06007 -30.54725 -28.52504 -27.71548 -27.21834 -24.82742 -23.38530 -22.30677 -22.07848 -19.79749 -18.76041 -18.13966 -16.94991 -16.46849 -15.83177 -15.29188 -15.07879 -14.62789 -14.40685 -13.68492 -13.62912 -13.32587 -12.74106 -12.57572 -12.46830 -12.06701 -11.70391 -11.57657 -11.48188 -11.27253 -11.09436 -11.02441 -10.93420 -10.84756 -10.81620 -10.64371 -10.48242 -10.29805 -9.90134 -9.77964 -9.47726 -9.04560 -8.94845 -8.49872 -7.93482 -6.11950 -4.15214 3.09735 3.26730 3.33683 3.37251 3.56738 3.76197 4.37691 4.59098 4.73818 4.85815 4.94207 5.14523 5.18857 5.22525 5.35913 5.50177 5.53574 5.61721 5.71011 5.77516 5.80167 5.89349 5.92529 5.99625 6.00446 6.04922 6.14204 6.21060 6.24088 6.32793 6.37921 6.61947 6.62444 6.70696 6.87053 7.01968 7.13293 7.47434 7.69541 7.87312 8.19309 8.27542 8.70439 8.86295 9.49750 10.97680 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041937 B = 0.003861 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.505115 B = 7249.849792 C = 7377.693007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.013 4.013 3 C -0.156 4.156 4 C -0.125 4.125 5 C 0.521 3.479 6 O -0.548 6.548 7 N -0.610 5.610 8 C 0.090 3.910 9 C -0.107 4.107 10 C 0.043 3.957 11 H 0.038 0.962 12 C -0.515 4.515 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.111 3.889 21 C -0.142 4.142 22 C -0.186 4.186 23 C -0.179 4.179 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -0.977 -16.990 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 C -0.212 4.212 4 C -0.165 4.165 5 C 0.310 3.690 6 O -0.429 6.429 7 N -0.343 5.343 8 C -0.032 4.032 9 C -0.146 4.146 10 C 0.024 3.976 11 H 0.056 0.944 12 C -0.553 4.553 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.011 4.011 21 C -0.160 4.160 22 C -0.223 4.223 23 C -0.215 4.215 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.156 -0.576 -16.998 17.047 hybrid contribution 0.508 0.260 0.752 0.944 sum -0.648 -0.316 -16.247 16.263 Atomic orbital electron populations 1.22070 0.93925 1.01318 1.03340 1.19736 0.96017 0.94885 0.90736 1.22218 1.00041 0.95587 1.03394 1.21683 1.02190 1.00167 0.92421 1.20193 0.80600 0.84571 0.83611 1.90519 1.39311 1.27103 1.85943 1.48793 1.50271 1.29341 1.05862 1.22571 0.93240 0.87513 0.99925 1.22732 0.99419 1.02166 0.90268 1.19722 0.92876 0.94120 0.90837 0.94351 1.21035 1.35989 0.94119 1.04195 0.92283 1.24947 0.95730 0.95036 0.98018 1.69936 1.40723 1.10527 1.31496 0.86560 0.78246 0.80777 0.82251 1.20608 1.21206 1.19841 1.22322 0.98040 0.98435 0.82289 1.22377 1.03469 0.98749 0.91414 1.23153 0.92304 1.02728 1.04086 1.22909 0.98221 1.03271 0.97144 0.89498 0.93333 0.93681 0.93267 0.93352 0.89402 0.89280 0.89445 0.92247 0.92361 0.89792 0.92254 0.92894 0.92169 0.93430 0.88073 0.88090 0.89318 0.89254 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.02 37.16 0.30 -1.65 16 2 C -0.01 -0.16 0.62 -154.51 -0.10 -0.26 16 3 C -0.16 -2.04 6.77 37.15 0.25 -1.79 16 4 C -0.12 -1.66 3.76 -27.89 -0.10 -1.77 16 5 C 0.52 9.15 7.26 -10.99 -0.08 9.07 16 6 O -0.55 -10.88 11.67 5.56 0.06 -10.82 16 7 N -0.61 -11.53 3.33 -170.49 -0.57 -12.09 16 8 C 0.09 1.56 6.69 -2.53 -0.02 1.54 16 9 C -0.11 -2.29 5.75 -24.58 -0.14 -2.43 16 10 C 0.04 1.03 2.88 -89.91 -0.26 0.77 16 11 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 12 C -0.52 -13.62 8.50 -34.44 -0.29 -13.91 16 13 H 0.06 1.56 7.57 -52.48 -0.40 1.17 16 14 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 15 N -0.89 -24.19 12.11 55.43 0.67 -23.52 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 20 C 0.11 2.39 6.46 -3.04 -0.02 2.37 16 21 C -0.14 -1.47 5.14 -90.62 -0.47 -1.93 16 22 C -0.19 -1.76 9.57 -26.69 -0.26 -2.01 16 23 C -0.18 -1.67 9.39 -26.69 -0.25 -1.92 16 24 H 0.09 1.37 5.51 -51.93 -0.29 1.09 16 25 H 0.05 0.57 7.29 -51.93 -0.38 0.20 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.61 6.97 -51.93 -0.36 0.24 16 28 H 0.05 0.57 7.07 -51.93 -0.37 0.20 16 29 H 0.09 1.41 5.51 -51.93 -0.29 1.12 16 30 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.87 7.48 -51.93 -0.39 0.48 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.89 7.54 -51.93 -0.39 1.50 16 35 H 0.06 1.33 8.04 -51.93 -0.42 0.92 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.06 1.38 7.66 -51.93 -0.40 0.98 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 40 H 0.10 0.99 5.85 -51.93 -0.30 0.68 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.89 7.07 -51.93 -0.37 0.53 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -27.67 328.94 -8.69 -36.36 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.27 Total: 1.74 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.53 Total: -12.30 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.10 Total: -35.61 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.06 Total: -10.82 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.67 -8.69 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405789730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.024 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds