Wall clock time and date at job start Mon Mar 30 2020 07:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47238 * 2 1 4 4 C 1.52998 * 109.47154 * 120.00320 * 2 1 3 5 5 C 1.50693 * 109.46932 * 299.99943 * 4 2 1 6 6 O 1.21276 * 120.00285 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99974 * 180.02562 * 5 4 2 8 8 C 1.47423 * 125.64708 * 359.96859 * 7 5 4 9 9 C 1.54909 * 104.83351 * 155.90981 * 8 7 5 10 10 C 1.55158 * 101.61642 * 36.99324 * 9 8 7 11 11 H 1.08999 * 110.72042 * 82.87870 * 10 9 8 12 12 C 1.50695 * 110.72412 * 206.15548 * 10 9 8 13 13 H 1.08003 * 120.00393 * 118.54262 * 12 10 9 14 14 C 1.37880 * 119.99858 * 298.54782 * 12 10 9 15 15 N 1.31509 * 119.99863 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99990 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47231 * 89.99871 * 16 14 12 18 18 H 1.48502 * 109.46987 * 209.99697 * 16 14 12 19 19 H 1.48503 * 109.47083 * 329.99487 * 16 14 12 20 20 C 1.47016 * 125.64850 * 180.02562 * 7 5 4 21 21 C 1.53000 * 109.46738 * 240.00252 * 2 1 3 22 22 C 1.53002 * 117.50059 * 128.74962 * 21 2 1 23 23 C 1.53001 * 117.50086 * 60.08973 * 21 2 1 24 24 H 1.08996 * 109.46712 * 299.99696 * 1 2 3 25 25 H 1.08996 * 109.47204 * 59.99816 * 1 2 3 26 26 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47621 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47430 * 300.00317 * 3 2 1 29 29 H 1.09007 * 109.47383 * 60.00189 * 3 2 1 30 30 H 1.09002 * 109.47074 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.46966 * 59.99802 * 4 2 1 32 32 H 1.09000 * 110.36544 * 37.07402 * 8 7 5 33 33 H 1.09002 * 110.46474 * 274.79752 * 8 7 5 34 34 H 1.09002 * 111.00594 * 155.08642 * 9 8 7 35 35 H 1.09002 * 111.00655 * 278.89906 * 9 8 7 36 36 H 0.97003 * 120.00226 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.88531 * 300.42930 * 20 7 5 38 38 H 1.08996 * 109.88671 * 61.44743 * 20 7 5 39 39 H 1.08997 * 115.55044 * 274.41125 * 21 2 1 40 40 H 1.09005 * 117.49647 * 359.97438 * 22 21 2 41 41 H 1.08993 * 117.50431 * 145.01418 * 22 21 2 42 42 H 1.09001 * 117.49520 * 214.97605 * 23 21 2 43 43 H 1.08999 * 117.49971 * 359.97296 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5377 -0.0110 2.4796 6 8 0.8401 0.9748 2.3684 7 7 1.8638 -0.4712 3.7037 8 6 2.6995 -1.6532 3.9828 9 6 3.2746 -1.4067 5.3999 10 6 2.0757 -0.7231 6.1090 11 1 1.3686 -1.4676 6.4750 12 6 2.5536 0.1587 7.2337 13 1 2.3559 1.2202 7.2090 14 6 3.2433 -0.3896 8.2942 15 7 3.4836 -1.6822 8.3245 16 14 3.8363 0.7036 9.6880 17 1 2.7861 0.7847 10.7347 18 1 5.0753 0.1311 10.2733 19 1 4.1192 2.0640 9.1640 20 6 1.4439 0.1217 4.9819 21 6 2.0400 -0.7212 -1.2493 22 6 3.0763 0.0039 -2.1102 23 6 1.6374 -0.1482 -2.6096 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2491 32 1 3.5063 -1.7279 3.2537 33 1 2.0938 -2.5594 3.9715 34 1 3.5315 -2.3476 5.8864 35 1 4.1369 -0.7411 5.3613 36 1 3.9685 -2.0680 9.0708 37 1 1.7984 1.1504 5.0476 38 1 0.3572 0.0984 5.0621 39 1 2.1253 -1.8045 -1.1648 40 1 3.3945 0.9951 -1.7867 41 1 3.8431 -0.6023 -2.5923 42 1 1.4582 -0.8546 -3.4202 43 1 1.0089 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405789730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:56 Heat of formation + Delta-G solvation = -36.907912 kcal Electronic energy + Delta-G solvation = -20755.236878 eV Core-core repulsion = 17800.077325 eV Total energy + Delta-G solvation = -2955.159554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35802 -39.59478 -38.17123 -34.97032 -34.41735 -32.26775 -30.11849 -29.05100 -28.24354 -26.62284 -24.50919 -23.52415 -22.99284 -21.57369 -20.14076 -19.15918 -18.65365 -17.96204 -16.98544 -16.66678 -16.45350 -16.34824 -15.68263 -14.89399 -14.76594 -14.48478 -14.35257 -14.19249 -13.81453 -13.32409 -13.08128 -13.05997 -12.85797 -12.74473 -12.64141 -12.46161 -12.31038 -12.18325 -11.94879 -11.81112 -11.61968 -11.57094 -11.34452 -11.07525 -10.95225 -10.69494 -10.51251 -10.37272 -9.47988 -8.16304 -6.25653 1.41767 1.43582 1.52997 1.72924 2.15823 2.43840 2.99718 3.15413 3.58140 3.75196 3.98822 4.03663 4.10356 4.23845 4.29692 4.34526 4.43531 4.46302 4.50657 4.61005 4.68331 4.75545 4.81899 4.82836 4.86699 4.90089 5.07439 5.11929 5.14278 5.15693 5.19959 5.29588 5.36476 5.39685 5.44485 5.56611 5.58485 5.65132 5.79537 5.88124 6.28288 6.74375 6.80659 7.29932 7.41861 8.92467 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041937 B = 0.003861 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.505115 B = 7249.849792 C = 7377.693007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.011 4.011 3 C -0.152 4.152 4 C -0.117 4.117 5 C 0.516 3.484 6 O -0.575 6.575 7 N -0.617 5.617 8 C 0.102 3.898 9 C -0.099 4.099 10 C 0.037 3.963 11 H 0.016 0.984 12 C -0.537 4.537 13 H 0.048 0.952 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.953 3.047 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.273 1.273 20 C 0.123 3.877 21 C -0.146 4.146 22 C -0.183 4.183 23 C -0.176 4.176 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 -1.939 -18.910 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 C -0.208 4.208 4 C -0.156 4.156 5 C 0.307 3.693 6 O -0.456 6.456 7 N -0.350 5.350 8 C -0.020 4.020 9 C -0.138 4.138 10 C 0.018 3.982 11 H 0.034 0.966 12 C -0.576 4.576 13 H 0.067 0.933 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.778 3.222 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.198 1.198 20 C 0.000 4.000 21 C -0.164 4.164 22 C -0.220 4.220 23 C -0.212 4.212 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.249 -1.542 -18.937 19.002 hybrid contribution 0.169 0.612 1.338 1.481 sum -0.080 -0.929 -17.600 17.624 Atomic orbital electron populations 1.22000 0.94677 1.01551 1.02125 1.19709 0.95410 0.94477 0.91597 1.22147 1.00442 0.96149 1.02109 1.21753 1.03120 1.00705 0.90045 1.21073 0.79849 0.84283 0.84097 1.90536 1.40369 1.28417 1.86307 1.48869 1.50924 1.29879 1.05336 1.22543 0.94132 0.87350 0.97926 1.22494 0.97882 1.00628 0.92794 1.19639 0.93596 0.93773 0.91166 0.96569 1.21319 1.36491 0.94093 1.05670 0.93332 1.25616 0.95813 0.96274 1.00042 1.70022 1.41055 1.11598 1.32129 0.85639 0.77909 0.79109 0.79497 1.20234 1.20480 1.19791 1.21927 0.97396 0.97117 0.83590 1.22285 1.04347 0.99238 0.90525 1.23204 0.92668 1.02535 1.03605 1.22975 0.98086 1.03270 0.96916 0.92729 0.92483 0.92677 0.92494 0.92475 0.92779 0.87508 0.87138 0.88551 0.90503 0.91150 0.93853 0.92726 0.94225 0.94048 0.86660 0.88674 0.87899 0.87784 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.02 71.98 0.58 -3.04 16 2 C -0.01 -0.26 0.62 -52.18 -0.03 -0.29 16 3 C -0.15 -3.80 6.77 71.98 0.49 -3.31 16 4 C -0.12 -2.77 3.76 29.85 0.11 -2.66 16 5 C 0.52 17.59 7.26 87.65 0.64 18.23 16 6 O -0.57 -23.11 11.67 -3.02 -0.04 -23.14 16 7 N -0.62 -22.86 3.33 -811.70 -2.70 -25.56 16 8 C 0.10 3.32 6.69 86.86 0.58 3.90 16 9 C -0.10 -4.24 5.75 31.99 0.18 -4.06 16 10 C 0.04 1.82 2.88 -10.33 -0.03 1.79 16 11 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 12 C -0.54 -29.21 8.50 25.60 0.22 -28.99 16 13 H 0.05 2.66 7.57 -2.91 -0.02 2.64 16 14 C 0.02 1.22 5.33 84.66 0.45 1.67 16 15 N -0.91 -49.98 12.11 21.45 0.26 -49.72 16 16 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 C 0.12 5.44 6.46 86.75 0.56 6.00 16 21 C -0.15 -2.50 5.14 -10.79 -0.06 -2.56 16 22 C -0.18 -2.86 9.57 30.62 0.29 -2.56 16 23 C -0.18 -2.72 9.39 30.62 0.29 -2.43 16 24 H 0.05 1.72 5.51 -2.39 -0.01 1.71 16 25 H 0.06 1.27 7.29 -2.39 -0.02 1.25 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.31 6.97 -2.39 -0.02 1.29 16 28 H 0.06 1.29 7.07 -2.38 -0.02 1.27 16 29 H 0.05 1.74 5.51 -2.38 -0.01 1.73 16 30 H 0.11 2.22 7.85 -2.39 -0.02 2.20 16 31 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.10 2.46 7.48 -2.39 -0.02 2.44 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 3.18 7.54 -2.39 -0.02 3.16 16 35 H 0.04 1.95 8.04 -2.39 -0.02 1.93 16 36 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 37 H 0.04 1.89 7.66 -2.39 -0.02 1.87 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.12 1.71 8.11 -2.39 -0.02 1.69 16 40 H 0.09 1.60 5.85 -2.38 -0.01 1.59 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.46 7.07 -2.39 -0.02 1.45 16 Total: -1.00 -61.03 328.94 4.79 -56.24 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.97 Total: 15.71 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 4.27 Total: -18.31 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -2.44 Total: -75.27 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.04 Total: -23.14 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -61.03 4.79 -56.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405789730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.329 kcal (2) G-P(sol) polarization free energy of solvation -61.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds