Wall clock time and date at job start Mon Mar 30 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47124 * 2 1 4 4 C 1.53002 * 109.47299 * 119.99841 * 2 1 3 5 5 C 1.50701 * 109.47183 * 300.00291 * 4 2 1 6 6 O 1.21284 * 119.99672 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00418 * 179.97438 * 5 4 2 8 8 C 1.47028 * 125.64594 * 359.69502 * 7 5 4 9 9 C 1.54327 * 107.26751 * 178.84714 * 8 7 5 10 10 C 1.55154 * 103.02224 * 338.14060 * 9 8 7 11 11 H 1.09002 * 111.00308 * 277.23679 * 10 9 8 12 12 C 1.50700 * 111.00937 * 153.38074 * 10 9 8 13 13 H 1.08000 * 120.00065 * 273.08441 * 12 10 9 14 14 C 1.37872 * 120.00114 * 93.08444 * 12 10 9 15 15 N 1.31517 * 120.00256 * 179.10609 * 14 12 10 16 16 Si 1.86804 * 120.00069 * 359.10237 * 14 12 10 17 17 H 1.48501 * 109.46879 * 84.85682 * 16 14 12 18 18 H 1.48501 * 109.47616 * 204.86031 * 16 14 12 19 19 H 1.48501 * 109.47077 * 324.86184 * 16 14 12 20 20 C 1.47421 * 125.65396 * 179.97438 * 7 5 4 21 21 C 1.52999 * 109.47351 * 240.00240 * 2 1 3 22 22 C 1.52999 * 117.50438 * 128.62289 * 21 2 1 23 23 C 1.53000 * 60.00073 * 252.51114 * 22 21 2 24 24 H 1.08999 * 109.46757 * 60.00419 * 1 2 3 25 25 H 1.08994 * 109.47026 * 300.00234 * 1 2 3 26 26 H 1.08995 * 109.46661 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46717 * 60.00119 * 3 2 1 28 28 H 1.08997 * 109.46682 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46540 * 299.99789 * 3 2 1 30 30 H 1.09003 * 109.46948 * 60.00157 * 4 2 1 31 31 H 1.08990 * 109.47185 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.87957 * 298.39171 * 8 7 5 33 33 H 1.09003 * 109.87958 * 59.55558 * 8 7 5 34 34 H 1.08996 * 110.85180 * 219.67492 * 9 8 7 35 35 H 1.09001 * 110.51624 * 96.44731 * 9 8 7 36 36 H 0.96999 * 119.99789 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.36213 * 322.93160 * 20 7 5 38 38 H 1.08999 * 110.36664 * 85.25330 * 20 7 5 39 39 H 1.09002 * 115.54394 * 274.32641 * 21 2 1 40 40 H 1.08999 * 117.49358 * 359.97438 * 22 21 2 41 41 H 1.08993 * 117.50098 * 145.01843 * 22 21 2 42 42 H 1.09004 * 117.49408 * 252.51261 * 23 22 21 43 43 H 1.08994 * 117.52341 * 107.47790 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 8 0.8400 0.9750 2.3684 7 7 1.8628 -0.4715 3.7038 8 6 2.6907 -1.6542 3.9822 9 6 2.8154 -1.7754 5.5157 10 6 2.5140 -0.3346 6.0059 11 1 3.4035 0.2926 5.9461 12 6 1.9568 -0.3458 7.4061 13 1 0.8949 -0.4638 7.5638 14 6 2.8026 -0.2055 8.4858 15 7 2.3144 -0.1977 9.7070 16 14 4.6421 -0.0267 8.2143 17 1 4.9674 1.3982 7.9515 18 1 5.3683 -0.4850 9.4258 19 1 5.0529 -0.8511 7.0494 20 6 1.4426 0.1236 4.9855 21 6 2.0401 -0.7212 -1.2492 22 6 3.0742 0.0052 -2.1117 23 6 1.6358 -0.1494 -2.6096 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7208 1.2495 32 1 2.2126 -2.5454 3.5756 33 1 3.6792 -1.5270 3.5406 34 1 3.8235 -2.0766 5.8003 35 1 2.0777 -2.4773 5.9046 36 1 2.9095 -0.0986 10.4666 37 1 1.4288 1.2111 4.9123 38 1 0.4602 -0.2506 5.2734 39 1 2.1268 -1.8044 -1.1641 40 1 3.3909 0.9970 -1.7893 41 1 3.8416 -0.6001 -2.5941 42 1 1.4570 -0.8566 -3.4197 43 1 1.0062 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405789731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:59 Heat of formation + Delta-G solvation = -21.556146 kcal Electronic energy + Delta-G solvation = -20764.003371 eV Core-core repulsion = 17809.509519 eV Total energy + Delta-G solvation = -2954.493851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19612 -38.55201 -36.87842 -33.51395 -33.00610 -31.07190 -28.70747 -27.97008 -27.27833 -24.95735 -23.38801 -22.35719 -22.21151 -19.71474 -18.92632 -18.20396 -17.22963 -16.88486 -15.92124 -15.52603 -15.22554 -14.39980 -14.34507 -13.98652 -13.66815 -13.38565 -13.12012 -12.62976 -12.48018 -12.28355 -12.10877 -11.77136 -11.67789 -11.50947 -11.24115 -11.07252 -10.99058 -10.94826 -10.72691 -10.65140 -10.36899 -10.27145 -9.95077 -9.93300 -9.78471 -9.23826 -9.11115 -8.63376 -8.09679 -6.17321 -4.18122 2.98121 3.22315 3.30750 3.31368 3.43648 3.69795 4.33061 4.51701 4.66415 4.80072 4.86321 5.02372 5.10446 5.14794 5.28785 5.37148 5.44147 5.48612 5.57128 5.61062 5.72678 5.75893 5.81422 5.84249 5.93414 5.99748 6.02331 6.08375 6.09896 6.16556 6.29923 6.43293 6.55204 6.56112 6.62869 6.70648 6.80007 6.98688 7.22127 7.61936 8.03782 8.41117 8.58149 8.86755 9.44158 10.95341 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.039234 B = 0.004110 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.493002 B = 6811.441579 C = 7012.526323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.014 4.014 3 C -0.156 4.156 4 C -0.125 4.125 5 C 0.523 3.477 6 O -0.544 6.544 7 N -0.616 5.616 8 C 0.098 3.902 9 C -0.137 4.137 10 C 0.012 3.988 11 H 0.041 0.959 12 C -0.510 4.510 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.115 3.885 21 C -0.142 4.142 22 C -0.186 4.186 23 C -0.178 4.178 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -2.927 -20.573 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.165 4.165 5 C 0.312 3.688 6 O -0.423 6.423 7 N -0.349 5.349 8 C -0.025 4.025 9 C -0.175 4.175 10 C -0.008 4.008 11 H 0.059 0.941 12 C -0.548 4.548 13 H 0.095 0.905 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.006 4.006 21 C -0.161 4.161 22 C -0.223 4.223 23 C -0.215 4.215 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.822 -2.371 -20.489 20.706 hybrid contribution 1.151 -0.182 -0.045 1.166 sum 2.973 -2.554 -20.534 20.905 Atomic orbital electron populations 1.22071 0.93843 1.01364 1.03405 1.19743 0.96074 0.94883 0.90696 1.22222 1.00013 0.95572 1.03460 1.21696 1.02172 1.00209 0.92436 1.20202 0.80505 0.84572 0.83523 1.90540 1.38974 1.26982 1.85820 1.48792 1.50657 1.29221 1.06187 1.22131 0.93867 0.87344 0.99152 1.23064 1.01826 1.01948 0.90674 1.20253 0.94290 0.91424 0.94813 0.94091 1.20812 0.96063 1.50619 0.87336 0.90500 1.25034 0.98688 0.94130 0.95030 1.69891 1.35621 1.49528 0.98229 0.86868 0.85756 0.78998 0.77823 1.20169 1.21450 1.18853 1.22463 0.99257 0.97983 0.80924 1.22372 1.03542 0.98730 0.91421 1.23142 0.92362 1.02698 1.04072 1.22900 0.98183 1.03289 0.97113 0.93261 0.89488 0.93648 0.89416 0.93285 0.93262 0.89368 0.89302 0.92435 0.92519 0.91482 0.90713 0.92443 0.91505 0.91788 0.88079 0.88093 0.89319 0.89224 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.02 37.16 0.30 -1.57 16 2 C -0.01 -0.16 0.62 -154.50 -0.10 -0.25 16 3 C -0.16 -1.94 6.77 37.16 0.25 -1.69 16 4 C -0.13 -1.55 3.94 -27.88 -0.11 -1.66 16 5 C 0.52 8.65 7.26 -10.99 -0.08 8.57 16 6 O -0.54 -10.33 11.60 5.55 0.06 -10.26 16 7 N -0.62 -10.84 3.33 -170.52 -0.57 -11.41 16 8 C 0.10 1.52 6.49 -3.06 -0.02 1.50 16 9 C -0.14 -2.56 6.28 -24.90 -0.16 -2.72 16 10 C 0.01 0.26 2.39 -89.63 -0.21 0.05 16 11 H 0.04 0.93 6.02 -51.93 -0.31 0.61 16 12 C -0.51 -13.58 8.97 -34.44 -0.31 -13.89 16 13 H 0.08 2.23 8.00 -52.49 -0.42 1.81 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -26.43 13.96 55.43 0.77 -25.66 16 16 Si 0.88 20.55 26.81 -169.99 -4.56 15.99 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.26 -5.76 6.10 56.52 0.34 -5.41 16 20 C 0.12 2.36 6.36 -2.54 -0.02 2.35 16 21 C -0.14 -1.39 5.15 -90.62 -0.47 -1.86 16 22 C -0.19 -1.66 9.57 -26.73 -0.26 -1.92 16 23 C -0.18 -1.58 9.38 -26.73 -0.25 -1.83 16 24 H 0.05 0.56 7.29 -51.93 -0.38 0.18 16 25 H 0.09 1.33 5.51 -51.93 -0.29 1.04 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.34 5.51 -51.93 -0.29 1.06 16 28 H 0.05 0.57 6.98 -51.93 -0.36 0.21 16 29 H 0.05 0.56 7.07 -51.93 -0.37 0.19 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.23 7.14 -51.93 -0.37 0.86 16 35 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.07 1.42 8.04 -51.93 -0.42 1.01 16 38 H 0.06 1.35 7.98 -51.93 -0.41 0.94 16 39 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 40 H 0.10 0.93 5.85 -51.93 -0.30 0.63 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.86 7.07 -51.93 -0.37 0.49 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -29.03 326.59 -8.16 -37.19 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.28 Total: 2.21 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.52 Total: -12.99 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.21 Total: -37.07 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.56 Total: 15.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.03 -8.16 -37.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405789731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.636 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds