Wall clock time and date at job start Mon Mar 30 2020 07:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47124 * 2 1 4 4 C 1.53002 * 109.47299 * 119.99841 * 2 1 3 5 5 C 1.50701 * 109.47183 * 300.00291 * 4 2 1 6 6 O 1.21284 * 119.99672 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00418 * 179.97438 * 5 4 2 8 8 C 1.47028 * 125.64594 * 359.69502 * 7 5 4 9 9 C 1.54327 * 107.26751 * 178.84714 * 8 7 5 10 10 C 1.55154 * 103.02224 * 338.14060 * 9 8 7 11 11 H 1.09002 * 111.00308 * 277.23679 * 10 9 8 12 12 C 1.50700 * 111.00937 * 153.38074 * 10 9 8 13 13 H 1.08000 * 120.00065 * 273.08441 * 12 10 9 14 14 C 1.37872 * 120.00114 * 93.08444 * 12 10 9 15 15 N 1.31517 * 120.00256 * 179.10609 * 14 12 10 16 16 Si 1.86804 * 120.00069 * 359.10237 * 14 12 10 17 17 H 1.48501 * 109.46879 * 84.85682 * 16 14 12 18 18 H 1.48501 * 109.47616 * 204.86031 * 16 14 12 19 19 H 1.48501 * 109.47077 * 324.86184 * 16 14 12 20 20 C 1.47421 * 125.65396 * 179.97438 * 7 5 4 21 21 C 1.52999 * 109.47351 * 240.00240 * 2 1 3 22 22 C 1.52999 * 117.50438 * 128.62289 * 21 2 1 23 23 C 1.53000 * 60.00073 * 252.51114 * 22 21 2 24 24 H 1.08999 * 109.46757 * 60.00419 * 1 2 3 25 25 H 1.08994 * 109.47026 * 300.00234 * 1 2 3 26 26 H 1.08995 * 109.46661 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46717 * 60.00119 * 3 2 1 28 28 H 1.08997 * 109.46682 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46540 * 299.99789 * 3 2 1 30 30 H 1.09003 * 109.46948 * 60.00157 * 4 2 1 31 31 H 1.08990 * 109.47185 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.87957 * 298.39171 * 8 7 5 33 33 H 1.09003 * 109.87958 * 59.55558 * 8 7 5 34 34 H 1.08996 * 110.85180 * 219.67492 * 9 8 7 35 35 H 1.09001 * 110.51624 * 96.44731 * 9 8 7 36 36 H 0.96999 * 119.99789 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.36213 * 322.93160 * 20 7 5 38 38 H 1.08999 * 110.36664 * 85.25330 * 20 7 5 39 39 H 1.09002 * 115.54394 * 274.32641 * 21 2 1 40 40 H 1.08999 * 117.49358 * 359.97438 * 22 21 2 41 41 H 1.08993 * 117.50098 * 145.01843 * 22 21 2 42 42 H 1.09004 * 117.49408 * 252.51261 * 23 22 21 43 43 H 1.08994 * 117.52341 * 107.47790 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 8 0.8400 0.9750 2.3684 7 7 1.8628 -0.4715 3.7038 8 6 2.6907 -1.6542 3.9822 9 6 2.8154 -1.7754 5.5157 10 6 2.5140 -0.3346 6.0059 11 1 3.4035 0.2926 5.9461 12 6 1.9568 -0.3458 7.4061 13 1 0.8949 -0.4638 7.5638 14 6 2.8026 -0.2055 8.4858 15 7 2.3144 -0.1977 9.7070 16 14 4.6421 -0.0267 8.2143 17 1 4.9674 1.3982 7.9515 18 1 5.3683 -0.4850 9.4258 19 1 5.0529 -0.8511 7.0494 20 6 1.4426 0.1236 4.9855 21 6 2.0401 -0.7212 -1.2492 22 6 3.0742 0.0052 -2.1117 23 6 1.6358 -0.1494 -2.6096 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7208 1.2495 32 1 2.2126 -2.5454 3.5756 33 1 3.6792 -1.5270 3.5406 34 1 3.8235 -2.0766 5.8003 35 1 2.0777 -2.4773 5.9046 36 1 2.9095 -0.0986 10.4666 37 1 1.4288 1.2111 4.9123 38 1 0.4602 -0.2506 5.2734 39 1 2.1268 -1.8044 -1.1641 40 1 3.3909 0.9970 -1.7893 41 1 3.8416 -0.6001 -2.5941 42 1 1.4570 -0.8566 -3.4197 43 1 1.0062 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405789731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:58 Heat of formation + Delta-G solvation = -37.706894 kcal Electronic energy + Delta-G solvation = -20764.703720 eV Core-core repulsion = 17809.509519 eV Total energy + Delta-G solvation = -2955.194200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38187 -39.64043 -38.22144 -34.93909 -34.42412 -32.75675 -30.16219 -29.22493 -28.24854 -26.66303 -24.45600 -23.53415 -22.99337 -21.42665 -20.20240 -19.18391 -19.11836 -18.09790 -17.01525 -16.76113 -16.41335 -16.15139 -15.60426 -15.12628 -14.77203 -14.69451 -14.42857 -14.21487 -13.85239 -13.64934 -13.44255 -13.03108 -12.80689 -12.73108 -12.51962 -12.37429 -12.19638 -11.97413 -11.96003 -11.80293 -11.72565 -11.63570 -11.53659 -11.16674 -11.07951 -10.70254 -10.69704 -10.39165 -9.50065 -8.29500 -6.35083 1.38249 1.39058 1.50268 1.72116 2.13080 2.35987 2.99337 3.03681 3.58126 3.74859 3.96207 3.98420 4.03609 4.22228 4.22819 4.32104 4.33442 4.40445 4.46412 4.60834 4.66548 4.69538 4.77811 4.81805 4.86229 4.89654 4.98651 5.07033 5.13002 5.13921 5.15689 5.18984 5.30384 5.36202 5.37013 5.44166 5.51782 5.56300 5.62995 5.67903 6.28510 6.69886 6.73444 7.28141 7.31151 8.87060 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.039234 B = 0.004110 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.493002 B = 6811.441579 C = 7012.526323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.116 4.116 5 C 0.516 3.484 6 O -0.575 6.575 7 N -0.621 5.621 8 C 0.103 3.897 9 C -0.132 4.132 10 C 0.007 3.993 11 H 0.043 0.957 12 C -0.514 4.514 13 H 0.031 0.969 14 C 0.013 3.987 15 N -0.949 5.949 16 Si 0.944 3.056 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.230 1.230 20 C 0.123 3.877 21 C -0.145 4.145 22 C -0.182 4.182 23 C -0.178 4.178 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.267 0.733 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -4.622 -23.806 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 C -0.209 4.209 4 C -0.156 4.156 5 C 0.307 3.693 6 O -0.456 6.456 7 N -0.354 5.354 8 C -0.018 4.018 9 C -0.170 4.170 10 C -0.013 4.013 11 H 0.061 0.939 12 C -0.552 4.552 13 H 0.050 0.950 14 C -0.185 4.185 15 N -0.589 5.589 16 Si 0.768 3.232 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.153 1.153 20 C 0.000 4.000 21 C -0.163 4.163 22 C -0.219 4.219 23 C -0.215 4.215 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.134 0.866 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.367 -4.087 -23.767 24.508 hybrid contribution 0.192 0.414 0.954 1.058 sum 4.559 -3.673 -22.813 23.552 Atomic orbital electron populations 1.22004 0.94844 1.01522 1.02054 1.19716 0.95272 0.94521 0.91742 1.22150 1.00516 0.96138 1.02067 1.21756 1.03302 1.00664 0.89828 1.21089 0.79763 0.84285 0.84118 1.90558 1.40227 1.28538 1.86246 1.48863 1.51313 1.29916 1.05324 1.22242 0.95505 0.87529 0.96568 1.22907 1.02169 0.98595 0.93331 1.20167 0.94367 0.94289 0.92453 0.93898 1.21044 0.94208 1.49771 0.90207 0.95019 1.25952 1.04162 0.93903 0.94437 1.70053 1.37619 1.51770 0.99430 0.85805 0.79116 0.79430 0.78874 1.20020 1.21445 1.15258 1.22058 0.98093 0.97025 0.82818 1.22287 1.04273 0.99263 0.90452 1.23190 0.92633 1.02525 1.03550 1.22961 0.98193 1.03276 0.97048 0.92641 0.92784 0.92678 0.92764 0.92318 0.92659 0.86999 0.87164 0.89249 0.89364 0.90225 0.91736 0.92419 0.93316 0.93696 0.86558 0.88658 0.87866 0.87858 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.02 71.98 0.58 -2.90 16 2 C -0.01 -0.25 0.62 -52.18 -0.03 -0.28 16 3 C -0.15 -3.56 6.77 71.99 0.49 -3.07 16 4 C -0.12 -2.45 3.94 29.85 0.12 -2.33 16 5 C 0.52 16.25 7.26 87.66 0.64 16.89 16 6 O -0.57 -22.07 11.60 -3.04 -0.04 -22.11 16 7 N -0.62 -20.76 3.33 -811.81 -2.70 -23.46 16 8 C 0.10 2.77 6.49 86.73 0.56 3.34 16 9 C -0.13 -4.61 6.28 31.78 0.20 -4.41 16 10 C 0.01 0.30 2.39 -10.15 -0.02 0.28 16 11 H 0.04 1.87 6.02 -2.39 -0.01 1.86 16 12 C -0.51 -28.36 8.97 25.60 0.23 -28.13 16 13 H 0.03 1.97 8.00 -2.91 -0.02 1.94 16 14 C 0.01 0.73 5.47 84.65 0.46 1.19 16 15 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 16 Si 0.94 41.92 26.81 68.60 1.84 43.76 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.23 -8.87 6.10 99.48 0.61 -8.26 16 20 C 0.12 5.15 6.36 86.85 0.55 5.70 16 21 C -0.14 -2.26 5.15 -10.79 -0.06 -2.31 16 22 C -0.18 -2.58 9.57 30.59 0.29 -2.29 16 23 C -0.18 -2.58 9.38 30.59 0.29 -2.29 16 24 H 0.05 1.20 7.29 -2.39 -0.02 1.18 16 25 H 0.05 1.66 5.51 -2.39 -0.01 1.64 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.66 5.51 -2.39 -0.01 1.65 16 28 H 0.06 1.23 6.98 -2.39 -0.02 1.22 16 29 H 0.05 1.19 7.07 -2.39 -0.02 1.17 16 30 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.59 7.14 -2.39 -0.02 2.57 16 35 H 0.06 2.37 8.03 -2.39 -0.02 2.35 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.05 2.16 8.04 -2.38 -0.02 2.14 16 38 H 0.04 2.01 7.98 -2.39 -0.02 1.99 16 39 H 0.12 1.52 8.11 -2.39 -0.02 1.50 16 40 H 0.10 1.47 5.85 -2.39 -0.01 1.45 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.38 7.07 -2.39 -0.02 1.36 16 Total: -1.00 -66.92 326.59 4.57 -62.35 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.87 Total: 17.97 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.29 Total: -20.63 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.40 Total: -81.34 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.04 Total: -22.11 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.84 Total: 43.76 kcal Total: -66.92 4.57 -62.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405789731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.642 kcal (2) G-P(sol) polarization free energy of solvation -66.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds