Wall clock time and date at job start Mon Mar 30 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47425 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99895 * 2 1 3 5 5 C 1.53000 * 109.47201 * 119.99965 * 2 1 3 6 6 N 1.46502 * 109.47052 * 65.59773 * 5 2 1 7 7 C 1.46496 * 120.00322 * 271.79425 * 6 5 2 8 8 C 1.50697 * 109.47491 * 264.47489 * 7 6 5 9 9 H 1.07996 * 119.99751 * 4.98139 * 8 7 6 10 10 C 1.37881 * 120.00086 * 184.98499 * 8 7 6 11 11 N 1.31509 * 119.99838 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00140 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47009 * 89.99782 * 12 10 8 14 14 H 1.48493 * 109.47328 * 210.00073 * 12 10 8 15 15 H 1.48503 * 109.46964 * 330.00419 * 12 10 8 16 16 C 1.34777 * 119.99773 * 91.80255 * 6 5 2 17 17 O 1.21281 * 120.00190 * 184.65793 * 16 6 5 18 18 C 1.50698 * 120.00106 * 4.65148 * 16 6 5 19 19 H 1.09000 * 115.55066 * 331.88789 * 18 16 6 20 20 C 1.52999 * 117.50045 * 117.55987 * 18 16 6 21 21 C 1.52998 * 117.49841 * 186.21818 * 18 16 6 22 22 C 1.52994 * 138.58730 * 121.61724 * 21 18 16 23 23 C 1.52992 * 59.99968 * 229.10656 * 22 21 18 24 24 H 1.09005 * 109.46877 * 299.99723 * 1 2 3 25 25 H 1.08998 * 109.47028 * 59.99888 * 1 2 3 26 26 H 1.08997 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47429 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46629 * 300.00175 * 3 2 1 29 29 H 1.09000 * 109.47249 * 60.00049 * 3 2 1 30 30 H 1.09001 * 109.47114 * 303.41737 * 4 2 1 31 31 H 1.09002 * 109.46874 * 63.41552 * 4 2 1 32 32 H 1.08995 * 109.46975 * 183.41577 * 4 2 1 33 33 H 1.08996 * 109.47170 * 305.60170 * 5 2 1 34 34 H 1.09002 * 109.47596 * 185.59820 * 5 2 1 35 35 H 1.09008 * 109.46719 * 24.47558 * 7 6 5 36 36 H 1.08996 * 109.47116 * 144.46922 * 7 6 5 37 37 H 0.96996 * 120.00341 * 180.02562 * 11 10 8 38 38 H 1.08996 * 117.50300 * 214.97991 * 20 18 16 39 39 H 1.09007 * 117.49886 * 359.97438 * 20 18 16 40 40 H 1.09002 * 117.50021 * 336.59917 * 22 21 18 41 41 H 1.09003 * 117.50015 * 121.61361 * 22 21 18 42 42 H 1.09004 * 117.50391 * 252.51346 * 23 22 21 43 43 H 1.08998 * 117.51942 * 107.48068 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.6648 -2.1359 1.1838 7 6 0.3708 -2.5757 1.7113 8 6 0.5461 -3.0704 3.1239 9 1 1.5061 -2.9842 3.6110 10 6 -0.5192 -3.6332 3.7945 11 7 -1.6883 -3.7378 3.2014 12 14 -0.3017 -4.2471 5.5452 13 1 -0.6042 -3.1476 6.4964 14 1 -1.2272 -5.3822 5.7903 15 1 1.0992 -4.6994 5.7408 16 6 2.5102 -3.0327 0.6383 17 8 2.1664 -4.1883 0.5070 18 6 3.8827 -2.5996 0.1914 19 1 3.9709 -1.5563 -0.1119 20 6 5.0864 -3.2368 0.8884 21 6 4.7405 -3.6261 -0.5510 22 6 5.4450 -3.7709 -1.9014 23 6 4.5481 -4.8962 -1.3819 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6275 -1.7298 -1.2804 31 1 1.7275 -0.1733 -2.1382 32 1 3.1282 -0.7746 -1.2192 33 1 1.5971 -0.2686 2.1364 34 1 3.1254 -0.6353 1.3008 35 1 -0.3280 -1.7392 1.7033 36 1 -0.0199 -3.3815 1.0900 37 1 -2.4378 -4.1334 3.6732 38 1 5.9667 -2.6130 1.0433 39 1 4.8857 -3.9691 1.6705 40 1 5.0707 -3.1713 -2.7312 41 1 6.5217 -3.9402 -1.8918 42 1 5.0347 -5.8061 -1.0304 43 1 3.5836 -5.0373 -1.8695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421454719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:14 Heat of formation + Delta-G solvation = 16.647805 kcal Electronic energy + Delta-G solvation = -21425.282069 eV Core-core repulsion = 18472.444865 eV Total energy + Delta-G solvation = -2952.837204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77235 -37.69293 -36.53248 -33.78443 -32.53108 -32.09780 -28.07143 -27.15007 -26.83979 -25.47394 -23.95074 -22.23701 -21.85617 -19.53730 -19.07400 -17.48463 -16.57195 -16.46965 -15.43442 -14.91342 -14.78422 -14.57589 -14.20973 -13.91758 -13.72420 -13.22375 -12.83092 -12.39451 -12.28134 -12.04837 -11.78504 -11.57022 -11.36391 -11.28142 -11.21694 -11.17312 -10.90496 -10.77975 -10.55931 -10.41913 -10.25073 -10.03299 -9.91696 -9.82573 -9.68050 -9.50623 -8.73252 -8.38323 -7.52370 -6.00037 -4.04117 3.22287 3.31991 3.38720 3.43230 3.69628 4.06112 4.20088 4.48276 4.56876 4.96938 5.00816 5.04975 5.13930 5.23261 5.33350 5.43804 5.62616 5.67067 5.72331 5.74144 5.76339 5.81473 5.82301 5.86783 5.98281 6.01547 6.10014 6.12039 6.18680 6.22590 6.29083 6.33088 6.39741 6.44058 6.61823 6.74975 7.14388 7.51449 7.65477 7.97667 8.29402 8.52680 8.96593 9.22641 9.60930 11.07806 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.007400 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.754857 B = 3782.716823 C = 5012.744846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.121 3.879 6 N -0.592 5.592 7 C 0.245 3.755 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.537 3.463 17 O -0.535 6.535 18 C -0.143 4.143 19 H 0.124 0.876 20 C -0.105 4.105 21 C -0.201 4.201 22 C -0.134 4.134 23 C -0.113 4.113 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.520 8.049 -8.495 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.004 4.004 6 N -0.323 5.323 7 C 0.126 3.874 8 C -0.563 4.563 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.724 3.276 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.323 3.677 17 O -0.412 6.412 18 C -0.164 4.164 19 H 0.142 0.858 20 C -0.143 4.143 21 C -0.201 4.201 22 C -0.171 4.171 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.102 7.354 -8.514 15.806 hybrid contribution -0.044 -0.184 1.093 1.109 sum 11.058 7.169 -7.421 15.125 Atomic orbital electron populations 1.21975 0.94031 1.03181 1.00842 1.21011 0.96809 0.94987 0.96119 1.21806 1.00508 0.95449 1.01696 1.22053 1.00477 1.00934 0.96665 1.21538 0.99238 0.82496 0.97145 1.48077 1.19966 1.05901 1.58330 1.19357 0.78252 0.95943 0.93833 1.21464 0.96558 1.39873 0.98385 0.92610 1.24914 0.95168 0.95634 0.98322 1.69926 1.01132 1.45087 1.37264 0.86534 0.78047 0.78458 0.84603 1.20685 1.21138 1.19968 1.19318 0.84771 0.85584 0.77985 1.90658 1.76616 1.18439 1.55518 1.22463 0.91707 0.98166 1.04061 0.85827 1.22630 0.96804 1.01845 0.92983 1.21109 1.04965 1.01746 0.92300 1.22714 0.98078 1.02281 0.94036 1.22520 1.00697 0.91402 1.00401 0.92603 0.93611 0.91120 0.92936 0.92806 0.92517 0.92191 0.93184 0.92600 0.90285 0.91505 0.94437 0.94127 0.92812 0.88240 0.88114 0.88891 0.88795 0.88837 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.45 37.16 0.28 -1.94 16 2 C -0.09 -1.23 0.85 -154.51 -0.13 -1.37 16 3 C -0.14 -1.51 8.47 37.16 0.31 -1.19 16 4 C -0.14 -2.00 7.04 37.16 0.26 -1.74 16 5 C 0.12 1.98 4.44 -4.04 -0.02 1.96 16 6 N -0.59 -12.54 1.98 -175.06 -0.35 -12.88 16 7 C 0.25 6.37 4.07 -5.20 -0.02 6.35 16 8 C -0.52 -14.99 9.34 -34.44 -0.32 -15.31 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 12 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.54 11.50 5.80 -10.99 -0.06 11.44 16 17 O -0.54 -13.88 15.96 5.56 0.09 -13.79 16 18 C -0.14 -2.33 4.23 -91.77 -0.39 -2.72 16 19 H 0.12 1.72 4.12 -51.93 -0.21 1.51 16 20 C -0.11 -1.55 10.24 -26.70 -0.27 -1.82 16 21 C -0.20 -3.02 5.04 -154.48 -0.78 -3.80 16 22 C -0.13 -1.58 10.53 -26.74 -0.28 -1.86 16 23 C -0.11 -1.64 10.23 -26.74 -0.27 -1.91 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.32 5.84 -51.93 -0.30 1.01 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.01 6.63 -51.93 -0.34 0.67 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.70 5.50 -51.93 -0.29 0.42 16 33 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 34 H 0.07 0.96 6.21 -51.93 -0.32 0.63 16 35 H 0.04 0.97 6.02 -51.92 -0.31 0.65 16 36 H 0.04 1.21 7.53 -51.93 -0.39 0.82 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -32.50 339.03 -8.44 -40.94 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.21 Total: 1.80 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.80 Total: -12.24 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.39 Total: -38.98 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.50 -8.44 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421454719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.592 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds