Wall clock time and date at job start Mon Mar 30 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47425 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99895 * 2 1 3 5 5 C 1.53000 * 109.47201 * 119.99965 * 2 1 3 6 6 N 1.46502 * 109.47052 * 65.59773 * 5 2 1 7 7 C 1.46496 * 120.00322 * 271.79425 * 6 5 2 8 8 C 1.50697 * 109.47491 * 264.47489 * 7 6 5 9 9 H 1.07996 * 119.99751 * 4.98139 * 8 7 6 10 10 C 1.37881 * 120.00086 * 184.98499 * 8 7 6 11 11 N 1.31509 * 119.99838 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00140 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47009 * 89.99782 * 12 10 8 14 14 H 1.48493 * 109.47328 * 210.00073 * 12 10 8 15 15 H 1.48503 * 109.46964 * 330.00419 * 12 10 8 16 16 C 1.34777 * 119.99773 * 91.80255 * 6 5 2 17 17 O 1.21281 * 120.00190 * 184.65793 * 16 6 5 18 18 C 1.50698 * 120.00106 * 4.65148 * 16 6 5 19 19 H 1.09000 * 115.55066 * 331.88789 * 18 16 6 20 20 C 1.52999 * 117.50045 * 117.55987 * 18 16 6 21 21 C 1.52998 * 117.49841 * 186.21818 * 18 16 6 22 22 C 1.52994 * 138.58730 * 121.61724 * 21 18 16 23 23 C 1.52992 * 59.99968 * 229.10656 * 22 21 18 24 24 H 1.09005 * 109.46877 * 299.99723 * 1 2 3 25 25 H 1.08998 * 109.47028 * 59.99888 * 1 2 3 26 26 H 1.08997 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47429 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46629 * 300.00175 * 3 2 1 29 29 H 1.09000 * 109.47249 * 60.00049 * 3 2 1 30 30 H 1.09001 * 109.47114 * 303.41737 * 4 2 1 31 31 H 1.09002 * 109.46874 * 63.41552 * 4 2 1 32 32 H 1.08995 * 109.46975 * 183.41577 * 4 2 1 33 33 H 1.08996 * 109.47170 * 305.60170 * 5 2 1 34 34 H 1.09002 * 109.47596 * 185.59820 * 5 2 1 35 35 H 1.09008 * 109.46719 * 24.47558 * 7 6 5 36 36 H 1.08996 * 109.47116 * 144.46922 * 7 6 5 37 37 H 0.96996 * 120.00341 * 180.02562 * 11 10 8 38 38 H 1.08996 * 117.50300 * 214.97991 * 20 18 16 39 39 H 1.09007 * 117.49886 * 359.97438 * 20 18 16 40 40 H 1.09002 * 117.50021 * 336.59917 * 22 21 18 41 41 H 1.09003 * 117.50015 * 121.61361 * 22 21 18 42 42 H 1.09004 * 117.50391 * 252.51346 * 23 22 21 43 43 H 1.08998 * 117.51942 * 107.48068 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.6648 -2.1359 1.1838 7 6 0.3708 -2.5757 1.7113 8 6 0.5461 -3.0704 3.1239 9 1 1.5061 -2.9842 3.6110 10 6 -0.5192 -3.6332 3.7945 11 7 -1.6883 -3.7378 3.2014 12 14 -0.3017 -4.2471 5.5452 13 1 -0.6042 -3.1476 6.4964 14 1 -1.2272 -5.3822 5.7903 15 1 1.0992 -4.6994 5.7408 16 6 2.5102 -3.0327 0.6383 17 8 2.1664 -4.1883 0.5070 18 6 3.8827 -2.5996 0.1914 19 1 3.9709 -1.5563 -0.1119 20 6 5.0864 -3.2368 0.8884 21 6 4.7405 -3.6261 -0.5510 22 6 5.4450 -3.7709 -1.9014 23 6 4.5481 -4.8962 -1.3819 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6275 -1.7298 -1.2804 31 1 1.7275 -0.1733 -2.1382 32 1 3.1282 -0.7746 -1.2192 33 1 1.5971 -0.2686 2.1364 34 1 3.1254 -0.6353 1.3008 35 1 -0.3280 -1.7392 1.7033 36 1 -0.0199 -3.3815 1.0900 37 1 -2.4378 -4.1334 3.6732 38 1 5.9667 -2.6130 1.0433 39 1 4.8857 -3.9691 1.6705 40 1 5.0707 -3.1713 -2.7312 41 1 6.5217 -3.9402 -1.8918 42 1 5.0347 -5.8061 -1.0304 43 1 3.5836 -5.0373 -1.8695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421454719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:14 Heat of formation + Delta-G solvation = -2.020389 kcal Electronic energy + Delta-G solvation = -21426.091582 eV Core-core repulsion = 18472.444865 eV Total energy + Delta-G solvation = -2953.646717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28764 -38.92343 -37.99042 -35.64551 -34.32539 -33.48864 -29.94542 -28.30879 -28.07787 -26.92817 -25.75103 -23.52566 -23.25472 -20.90256 -20.29073 -18.93781 -18.61259 -18.05982 -17.10450 -16.51146 -16.20274 -15.84598 -15.57707 -15.25210 -15.03402 -14.67632 -14.46435 -14.17456 -13.60047 -13.46679 -13.27636 -13.03102 -12.80809 -12.70732 -12.56197 -12.49495 -12.37110 -12.31043 -12.15966 -11.97514 -11.69736 -11.56353 -11.44304 -11.07655 -10.96453 -10.82389 -10.62555 -10.43571 -9.32404 -8.22459 -6.37348 1.32714 1.36206 1.46191 1.70646 2.23961 2.40332 2.83277 2.91728 3.06625 3.40074 3.76156 3.82875 3.88801 3.94807 4.10043 4.14187 4.46341 4.52747 4.58532 4.65073 4.74745 4.76551 4.77406 4.81352 4.81960 4.93105 4.95320 5.00709 5.03938 5.06924 5.10981 5.14834 5.24321 5.24985 5.29543 5.36922 5.45623 5.55957 5.60620 5.91505 6.09191 6.69800 6.86853 7.28735 7.56149 8.83997 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.007400 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.754857 B = 3782.716823 C = 5012.744846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.138 4.138 5 C 0.113 3.887 6 N -0.594 5.594 7 C 0.266 3.734 8 C -0.543 4.543 9 H 0.050 0.950 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.966 3.034 13 H -0.261 1.261 14 H -0.281 1.281 15 H -0.274 1.274 16 C 0.527 3.473 17 O -0.597 6.597 18 C -0.149 4.149 19 H 0.155 0.845 20 C -0.093 4.093 21 C -0.223 4.223 22 C -0.088 4.088 23 C -0.142 4.142 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.034 0.966 36 H -0.014 1.014 37 H 0.266 0.734 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.610 10.412 -8.645 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C -0.187 4.187 4 C -0.195 4.195 5 C -0.009 4.009 6 N -0.323 5.323 7 C 0.145 3.855 8 C -0.581 4.581 9 H 0.069 0.931 10 C -0.192 4.192 11 N -0.569 5.569 12 Si 0.790 3.210 13 H -0.186 1.186 14 H -0.207 1.207 15 H -0.199 1.199 16 C 0.317 3.683 17 O -0.479 6.479 18 C -0.169 4.169 19 H 0.172 0.828 20 C -0.130 4.130 21 C -0.223 4.223 22 C -0.125 4.125 23 C -0.179 4.179 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.051 0.949 36 H 0.004 0.996 37 H 0.075 0.925 38 H 0.162 0.838 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.213 9.774 -8.670 19.306 hybrid contribution -1.070 -0.956 1.082 1.797 sum 13.143 8.818 -7.588 17.552 Atomic orbital electron populations 1.21943 0.95777 1.00494 1.01700 1.20990 0.95358 0.97155 0.94866 1.21748 1.01890 0.92373 1.02642 1.21997 1.01461 0.98722 0.97335 1.21885 1.01179 0.79588 0.98278 1.48042 1.18274 1.08265 1.57761 1.18760 0.80764 0.93958 0.92040 1.21758 0.96415 1.40429 0.99515 0.93143 1.25850 0.94757 0.95622 1.02938 1.70056 1.01968 1.45693 1.39141 0.85445 0.77855 0.78373 0.79328 1.18576 1.20657 1.19907 1.20306 0.86573 0.84681 0.76778 1.90615 1.78165 1.21119 1.57993 1.22337 0.88507 0.99970 1.06087 0.82778 1.22733 0.96968 1.01281 0.92048 1.21407 1.05116 1.01715 0.94079 1.22865 0.99106 0.98721 0.91762 1.22564 1.00894 0.92567 1.01914 0.92982 0.91478 0.95520 0.90673 0.91330 0.92211 0.96320 0.91194 0.90575 0.91185 0.88309 0.94857 0.99569 0.92502 0.83835 0.90806 0.87360 0.85639 0.88376 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 7.45 71.98 0.54 -3.94 16 2 C -0.08 -2.19 0.85 -52.18 -0.04 -2.24 16 3 C -0.13 -2.34 8.47 71.98 0.61 -1.73 16 4 C -0.14 -3.60 7.04 71.98 0.51 -3.09 16 5 C 0.11 3.65 4.44 86.38 0.38 4.03 16 6 N -0.59 -26.26 1.98 -826.16 -1.63 -27.90 16 7 C 0.27 14.85 4.07 85.63 0.35 15.19 16 8 C -0.54 -32.46 9.34 25.60 0.24 -32.23 16 9 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 10 C 0.01 0.42 5.46 84.66 0.46 0.88 16 11 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 12 Si 0.97 46.40 29.54 68.60 2.03 48.43 16 13 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 16 C 0.53 23.51 5.80 87.66 0.51 24.02 16 17 O -0.60 -33.34 15.96 -3.03 -0.05 -33.39 16 18 C -0.15 -4.63 4.23 -11.54 -0.05 -4.68 16 19 H 0.16 3.73 4.12 -2.39 -0.01 3.72 16 20 C -0.09 -2.53 10.24 30.62 0.31 -2.22 16 21 C -0.22 -6.31 5.04 -52.16 -0.26 -6.57 16 22 C -0.09 -1.76 10.53 30.59 0.32 -1.44 16 23 C -0.14 -4.10 10.23 30.59 0.31 -3.79 16 24 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.03 1.05 5.84 -2.39 -0.01 1.04 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.02 0.62 6.63 -2.39 -0.02 0.61 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.65 5.50 -2.39 -0.01 1.63 16 33 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 34 H 0.10 2.54 6.21 -2.39 -0.01 2.53 16 35 H 0.03 1.86 6.02 -2.38 -0.01 1.84 16 36 H -0.01 -0.91 7.53 -2.39 -0.02 -0.93 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -77.73 339.03 5.79 -71.94 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.98 Total: 16.45 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.19 Total: -17.78 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.35 Total: -85.64 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.05 Total: -33.39 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -77.73 5.79 -71.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421454719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.916 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds