Wall clock time and date at job start Mon Mar 30 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47042 * 2 1 4 4 C 1.52992 * 109.47277 * 239.99871 * 2 1 3 5 5 C 1.53005 * 109.47187 * 119.99926 * 2 1 3 6 6 N 1.46501 * 109.47139 * 63.00146 * 5 2 1 7 7 C 1.46498 * 120.00203 * 273.58551 * 6 5 2 8 8 C 1.50698 * 109.47130 * 264.36833 * 7 6 5 9 9 H 1.08000 * 119.99777 * 355.18559 * 8 7 6 10 10 C 1.37876 * 119.99820 * 175.45845 * 8 7 6 11 11 N 1.31515 * 119.99861 * 359.73148 * 10 8 7 12 12 Si 1.86795 * 120.00021 * 179.72173 * 10 8 7 13 13 H 1.48504 * 109.47235 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47037 * 120.00088 * 12 10 8 15 15 H 1.48498 * 109.47658 * 240.00121 * 12 10 8 16 16 C 1.34779 * 119.99494 * 93.58362 * 6 5 2 17 17 O 1.21284 * 119.99862 * 185.45381 * 16 6 5 18 18 C 1.50701 * 120.00141 * 5.46256 * 16 6 5 19 19 H 1.08996 * 115.55034 * 29.88471 * 18 16 6 20 20 C 1.53000 * 117.49658 * 244.21420 * 18 16 6 21 21 C 1.52991 * 59.99825 * 252.51286 * 20 18 16 22 22 C 1.53000 * 138.58958 * 130.89730 * 21 20 18 23 23 C 1.52995 * 138.58535 * 229.10636 * 21 20 18 24 24 H 1.08995 * 109.47471 * 292.76418 * 1 2 3 25 25 H 1.08995 * 109.47518 * 52.76923 * 1 2 3 26 26 H 1.09006 * 109.46746 * 172.76929 * 1 2 3 27 27 H 1.09002 * 109.47583 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47379 * 300.00178 * 3 2 1 29 29 H 1.09003 * 109.47338 * 60.00058 * 3 2 1 30 30 H 1.09001 * 109.47500 * 305.26918 * 4 2 1 31 31 H 1.08998 * 109.47148 * 65.27021 * 4 2 1 32 32 H 1.08998 * 109.47682 * 185.26996 * 4 2 1 33 33 H 1.09000 * 109.47215 * 303.00335 * 5 2 1 34 34 H 1.09000 * 109.46960 * 183.00739 * 5 2 1 35 35 H 1.09002 * 109.46844 * 144.36555 * 7 6 5 36 36 H 1.09005 * 109.46970 * 24.36925 * 7 6 5 37 37 H 0.97008 * 119.99543 * 179.97438 * 11 10 8 38 38 H 1.09000 * 117.49891 * 0.02562 * 20 18 16 39 39 H 1.08999 * 117.50372 * 144.99610 * 20 18 16 40 40 H 1.08997 * 117.49951 * 238.38286 * 22 21 20 41 41 H 1.09004 * 117.49689 * 23.39568 * 22 21 20 42 42 H 1.08994 * 117.50246 * 336.59483 * 23 21 20 43 43 H 1.09003 * 117.49707 * 121.59738 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0400 -0.7213 1.2493 6 7 1.6116 -2.1218 1.2137 7 6 0.2975 -2.4994 1.7396 8 6 0.4426 -2.9691 3.1642 9 1 1.4240 -3.0587 3.6059 10 6 -0.6773 -3.2897 3.9017 11 7 -1.8724 -3.1807 3.3637 12 14 -0.4971 -3.8793 5.6650 13 1 0.9418 -3.9141 6.0307 14 1 -1.2159 -2.9501 6.5735 15 1 -1.0738 -5.2417 5.7930 16 6 2.4266 -3.0627 0.6970 17 8 2.0350 -4.2043 0.5765 18 6 3.8245 -2.6965 0.2694 19 1 4.2867 -1.8794 0.8232 20 6 4.1647 -2.8241 -1.2169 21 6 4.7348 -3.8277 -0.2127 22 6 4.8639 -5.3439 -0.0531 23 6 6.0864 -4.4464 0.1497 24 1 -0.3634 0.3976 0.9475 25 1 -0.3634 0.6217 -0.8182 26 1 -0.3633 -1.0196 -0.1294 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6017 -1.7181 -1.2976 31 1 1.7558 -0.1558 -2.1366 32 1 3.1259 -0.8037 -1.2033 33 1 1.6334 -0.2394 2.1385 34 1 3.1287 -0.6748 1.2766 35 1 -0.1194 -3.3032 1.1327 36 1 -0.3683 -1.6370 1.7073 37 1 -2.6603 -3.4066 3.8826 38 1 3.3774 -3.1724 -1.8853 39 1 4.8508 -2.0908 -1.6409 40 1 4.4190 -5.7963 0.8331 41 1 4.8291 -5.9500 -0.9584 42 1 6.8558 -4.4622 -0.6220 43 1 6.4459 -4.3081 1.1694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421454726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:16 Heat of formation + Delta-G solvation = 14.310689 kcal Electronic energy + Delta-G solvation = -21438.771950 eV Core-core repulsion = 18485.833401 eV Total energy + Delta-G solvation = -2952.938549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78644 -37.64493 -36.54928 -33.79172 -32.56103 -32.15316 -27.98592 -27.05252 -26.78932 -25.48081 -24.09281 -22.22213 -21.81662 -19.54297 -19.08450 -17.50613 -16.70621 -16.28972 -15.41156 -14.85694 -14.81761 -14.57568 -14.15965 -13.95901 -13.63099 -13.23403 -13.00466 -12.36974 -12.13135 -12.07517 -11.76818 -11.48849 -11.35086 -11.31135 -11.25105 -11.15076 -10.89032 -10.81162 -10.52960 -10.40629 -10.20403 -10.10191 -9.87875 -9.81195 -9.71469 -9.49401 -8.74333 -8.39661 -7.52724 -6.01459 -4.05093 3.20779 3.30838 3.38583 3.43318 3.70264 4.05944 4.18012 4.46265 4.57340 4.94915 4.99419 5.09286 5.12857 5.28510 5.32760 5.44190 5.63097 5.69718 5.71582 5.76672 5.78563 5.82651 5.83827 5.85187 6.00539 6.03601 6.11639 6.14377 6.16214 6.25879 6.33043 6.37247 6.39479 6.47697 6.66316 6.78880 7.17403 7.49823 7.63491 7.96832 8.28916 8.53256 8.95236 9.20998 9.59901 11.06305 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.007726 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.262926 B = 3623.032126 C = 5078.745386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.143 4.143 5 C 0.121 3.879 6 N -0.590 5.590 7 C 0.244 3.756 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.536 3.464 17 O -0.538 6.538 18 C -0.134 4.134 19 H 0.117 0.883 20 C -0.101 4.101 21 C -0.203 4.203 22 C -0.114 4.114 23 C -0.135 4.135 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.052 6.791 -8.672 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.004 4.004 6 N -0.321 5.321 7 C 0.125 3.875 8 C -0.561 4.561 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.322 3.678 17 O -0.415 6.415 18 C -0.155 4.155 19 H 0.134 0.866 20 C -0.138 4.138 21 C -0.204 4.204 22 C -0.150 4.150 23 C -0.171 4.171 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.607 6.152 -8.669 15.739 hybrid contribution -0.066 -0.154 1.151 1.164 sum 11.541 5.998 -7.517 15.023 Atomic orbital electron populations 1.21959 0.94052 1.02595 1.01143 1.20981 0.96687 0.94948 0.96129 1.21799 1.00495 0.95471 1.01637 1.22057 1.00996 1.00522 0.96450 1.21566 0.98731 0.82845 0.97218 1.48077 1.19337 1.05721 1.58946 1.19384 0.77794 0.96802 0.93542 1.21521 0.92926 1.44326 0.97357 0.92602 1.24914 0.95120 0.95603 0.98489 1.69943 0.97616 1.49021 1.36949 0.86481 0.78118 0.78491 0.84569 1.19860 1.21002 1.20921 1.19326 0.85141 0.85304 0.78001 1.90652 1.75761 1.19974 1.55107 1.22183 0.94800 0.99842 0.98714 0.86566 1.22650 1.01478 0.99118 0.90542 1.21226 0.99818 0.94226 1.05137 1.22539 0.99122 0.90186 1.03184 1.22716 0.89871 1.02632 1.01923 0.92402 0.93704 0.91534 0.92947 0.92829 0.92605 0.92453 0.93388 0.92241 0.90431 0.91529 0.94732 0.93660 0.92864 0.88273 0.88244 0.88202 0.88878 0.88791 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.06 37.16 0.26 -1.96 16 2 C -0.09 -1.21 0.85 -154.51 -0.13 -1.34 16 3 C -0.14 -1.52 8.47 37.15 0.31 -1.21 16 4 C -0.14 -1.92 6.50 37.15 0.24 -1.68 16 5 C 0.12 2.00 4.54 -4.04 -0.02 1.98 16 6 N -0.59 -12.48 2.01 -175.05 -0.35 -12.83 16 7 C 0.24 6.34 4.05 -5.20 -0.02 6.32 16 8 C -0.52 -14.99 9.34 -34.44 -0.32 -15.32 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 12 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 C 0.54 11.39 5.93 -10.98 -0.07 11.32 16 17 O -0.54 -13.79 15.93 5.55 0.09 -13.70 16 18 C -0.13 -2.16 4.13 -91.78 -0.38 -2.54 16 19 H 0.12 1.66 6.35 -51.93 -0.33 1.33 16 20 C -0.10 -1.34 7.49 -26.74 -0.20 -1.54 16 21 C -0.20 -3.05 5.04 -154.52 -0.78 -3.83 16 22 C -0.11 -1.67 10.21 -26.73 -0.27 -1.94 16 23 C -0.13 -1.64 10.53 -26.73 -0.28 -1.92 16 24 H 0.06 0.95 7.88 -51.93 -0.41 0.54 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.24 6.39 -51.93 -0.33 0.91 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.93 6.61 -51.93 -0.34 0.58 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.71 5.32 -51.93 -0.28 0.44 16 33 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 34 H 0.07 0.95 5.74 -51.93 -0.30 0.65 16 35 H 0.03 1.02 7.53 -51.93 -0.39 0.63 16 36 H 0.05 1.18 5.81 -51.93 -0.30 0.87 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.10 1.41 8.04 -51.93 -0.42 0.99 16 39 H 0.10 1.03 8.06 -51.93 -0.42 0.62 16 40 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -32.43 336.87 -8.51 -40.94 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.29 Total: 1.33 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.75 Total: -12.03 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.38 Total: -38.77 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.43 -8.51 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421454726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.249 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds