Wall clock time and date at job start Mon Mar 30 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47042 * 2 1 4 4 C 1.52992 * 109.47277 * 239.99871 * 2 1 3 5 5 C 1.53005 * 109.47187 * 119.99926 * 2 1 3 6 6 N 1.46501 * 109.47139 * 63.00146 * 5 2 1 7 7 C 1.46498 * 120.00203 * 273.58551 * 6 5 2 8 8 C 1.50698 * 109.47130 * 264.36833 * 7 6 5 9 9 H 1.08000 * 119.99777 * 355.18559 * 8 7 6 10 10 C 1.37876 * 119.99820 * 175.45845 * 8 7 6 11 11 N 1.31515 * 119.99861 * 359.73148 * 10 8 7 12 12 Si 1.86795 * 120.00021 * 179.72173 * 10 8 7 13 13 H 1.48504 * 109.47235 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47037 * 120.00088 * 12 10 8 15 15 H 1.48498 * 109.47658 * 240.00121 * 12 10 8 16 16 C 1.34779 * 119.99494 * 93.58362 * 6 5 2 17 17 O 1.21284 * 119.99862 * 185.45381 * 16 6 5 18 18 C 1.50701 * 120.00141 * 5.46256 * 16 6 5 19 19 H 1.08996 * 115.55034 * 29.88471 * 18 16 6 20 20 C 1.53000 * 117.49658 * 244.21420 * 18 16 6 21 21 C 1.52991 * 59.99825 * 252.51286 * 20 18 16 22 22 C 1.53000 * 138.58958 * 130.89730 * 21 20 18 23 23 C 1.52995 * 138.58535 * 229.10636 * 21 20 18 24 24 H 1.08995 * 109.47471 * 292.76418 * 1 2 3 25 25 H 1.08995 * 109.47518 * 52.76923 * 1 2 3 26 26 H 1.09006 * 109.46746 * 172.76929 * 1 2 3 27 27 H 1.09002 * 109.47583 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47379 * 300.00178 * 3 2 1 29 29 H 1.09003 * 109.47338 * 60.00058 * 3 2 1 30 30 H 1.09001 * 109.47500 * 305.26918 * 4 2 1 31 31 H 1.08998 * 109.47148 * 65.27021 * 4 2 1 32 32 H 1.08998 * 109.47682 * 185.26996 * 4 2 1 33 33 H 1.09000 * 109.47215 * 303.00335 * 5 2 1 34 34 H 1.09000 * 109.46960 * 183.00739 * 5 2 1 35 35 H 1.09002 * 109.46844 * 144.36555 * 7 6 5 36 36 H 1.09005 * 109.46970 * 24.36925 * 7 6 5 37 37 H 0.97008 * 119.99543 * 179.97438 * 11 10 8 38 38 H 1.09000 * 117.49891 * 0.02562 * 20 18 16 39 39 H 1.08999 * 117.50372 * 144.99610 * 20 18 16 40 40 H 1.08997 * 117.49951 * 238.38286 * 22 21 20 41 41 H 1.09004 * 117.49689 * 23.39568 * 22 21 20 42 42 H 1.08994 * 117.50246 * 336.59483 * 23 21 20 43 43 H 1.09003 * 117.49707 * 121.59738 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0400 -0.7213 1.2493 6 7 1.6116 -2.1218 1.2137 7 6 0.2975 -2.4994 1.7396 8 6 0.4426 -2.9691 3.1642 9 1 1.4240 -3.0587 3.6059 10 6 -0.6773 -3.2897 3.9017 11 7 -1.8724 -3.1807 3.3637 12 14 -0.4971 -3.8793 5.6650 13 1 0.9418 -3.9141 6.0307 14 1 -1.2159 -2.9501 6.5735 15 1 -1.0738 -5.2417 5.7930 16 6 2.4266 -3.0627 0.6970 17 8 2.0350 -4.2043 0.5765 18 6 3.8245 -2.6965 0.2694 19 1 4.2867 -1.8794 0.8232 20 6 4.1647 -2.8241 -1.2169 21 6 4.7348 -3.8277 -0.2127 22 6 4.8639 -5.3439 -0.0531 23 6 6.0864 -4.4464 0.1497 24 1 -0.3634 0.3976 0.9475 25 1 -0.3634 0.6217 -0.8182 26 1 -0.3633 -1.0196 -0.1294 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6017 -1.7181 -1.2976 31 1 1.7558 -0.1558 -2.1366 32 1 3.1259 -0.8037 -1.2033 33 1 1.6334 -0.2394 2.1385 34 1 3.1287 -0.6748 1.2766 35 1 -0.1194 -3.3032 1.1327 36 1 -0.3683 -1.6370 1.7073 37 1 -2.6603 -3.4066 3.8826 38 1 3.3774 -3.1724 -1.8853 39 1 4.8508 -2.0908 -1.6409 40 1 4.4190 -5.7963 0.8331 41 1 4.8291 -5.9500 -0.9584 42 1 6.8558 -4.4622 -0.6220 43 1 6.4459 -4.3081 1.1694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421454726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:15 Heat of formation + Delta-G solvation = -4.380014 kcal Electronic energy + Delta-G solvation = -21439.582439 eV Core-core repulsion = 18485.833401 eV Total energy + Delta-G solvation = -2953.749038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28355 -38.87071 -38.00104 -35.64413 -34.33138 -33.54876 -29.91456 -28.10141 -28.06280 -26.93699 -25.87806 -23.48413 -23.25810 -20.82342 -20.36435 -18.91800 -18.69221 -17.96450 -17.11187 -16.44902 -16.17762 -15.88023 -15.49341 -15.29503 -14.90348 -14.75278 -14.45073 -14.28011 -13.56375 -13.34855 -13.20706 -13.02793 -12.79333 -12.74096 -12.59130 -12.47504 -12.38605 -12.30679 -12.14832 -11.97611 -11.68835 -11.53022 -11.42674 -11.01019 -10.95164 -10.83617 -10.64402 -10.43295 -9.32267 -8.24082 -6.38796 1.31763 1.34193 1.46018 1.71601 2.26171 2.38758 2.82588 2.93089 3.04401 3.39929 3.72746 3.87111 3.91975 3.97055 4.12817 4.17416 4.50721 4.54937 4.61465 4.64898 4.76121 4.77943 4.82287 4.83505 4.85176 4.95890 4.99762 5.03301 5.04801 5.09198 5.13799 5.17391 5.25024 5.26760 5.29575 5.39472 5.48885 5.55715 5.61839 5.90426 6.08575 6.69559 6.86404 7.26937 7.55743 8.82277 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.007726 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.262926 B = 3623.032126 C = 5078.745386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.128 4.128 4 C -0.137 4.137 5 C 0.114 3.886 6 N -0.593 5.593 7 C 0.265 3.735 8 C -0.543 4.543 9 H 0.046 0.954 10 C 0.009 3.991 11 N -0.927 5.927 12 Si 0.965 3.035 13 H -0.270 1.270 14 H -0.266 1.266 15 H -0.281 1.281 16 C 0.526 3.474 17 O -0.598 6.598 18 C -0.146 4.146 19 H 0.143 0.857 20 C -0.072 4.072 21 C -0.230 4.230 22 C -0.142 4.142 23 C -0.094 4.094 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.100 0.900 35 H -0.018 1.018 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.083 0.917 39 H 0.146 0.854 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.187 8.930 -9.071 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 C -0.186 4.186 4 C -0.194 4.194 5 C -0.008 4.008 6 N -0.322 5.322 7 C 0.144 3.856 8 C -0.582 4.582 9 H 0.064 0.936 10 C -0.190 4.190 11 N -0.567 5.567 12 Si 0.789 3.211 13 H -0.195 1.195 14 H -0.191 1.191 15 H -0.207 1.207 16 C 0.315 3.685 17 O -0.480 6.480 18 C -0.167 4.167 19 H 0.161 0.839 20 C -0.109 4.109 21 C -0.230 4.230 22 C -0.179 4.179 23 C -0.131 4.131 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.000 1.000 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.164 0.836 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.764 8.343 -9.075 19.234 hybrid contribution -1.112 -0.861 1.243 1.877 sum 13.652 7.482 -7.833 17.427 Atomic orbital electron populations 1.21918 0.96060 1.00276 1.01266 1.20967 0.94990 0.97124 0.95171 1.21742 1.01940 0.92493 1.02437 1.22006 1.02089 0.98540 0.96766 1.21902 1.00659 0.80045 0.98204 1.48041 1.17634 1.08091 1.58452 1.18773 0.80423 0.94654 0.91766 1.21773 0.92665 1.45094 0.98620 0.93610 1.25820 0.94688 0.95412 1.03095 1.70056 0.98399 1.49457 1.38769 0.85412 0.78327 0.78140 0.79205 1.19451 1.19089 1.20662 1.20327 0.87076 0.84300 0.76748 1.90611 1.77376 1.22484 1.57544 1.22069 0.91298 1.01785 1.01513 0.83907 1.22770 1.00962 0.98785 0.88335 1.21564 1.01806 0.93920 1.05736 1.22546 1.02111 0.90813 1.02470 1.22835 0.88797 0.98094 1.03332 0.93811 0.91336 0.95675 0.90572 0.91300 0.92641 0.96209 0.91378 0.89955 0.91707 0.88209 0.99998 0.94288 0.92402 0.89817 0.83639 0.91533 0.87900 0.85369 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 7.06 71.98 0.51 -3.96 16 2 C -0.08 -2.18 0.85 -52.19 -0.04 -2.22 16 3 C -0.13 -2.39 8.47 71.98 0.61 -1.78 16 4 C -0.14 -3.41 6.50 71.98 0.47 -2.94 16 5 C 0.11 3.72 4.54 86.38 0.39 4.11 16 6 N -0.59 -26.21 2.01 -826.13 -1.66 -27.87 16 7 C 0.27 14.83 4.05 85.63 0.35 15.18 16 8 C -0.54 -32.71 9.34 25.60 0.24 -32.47 16 9 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 10 C 0.01 0.52 5.46 84.65 0.46 0.98 16 11 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 12 Si 0.96 46.43 29.54 68.60 2.03 48.46 16 13 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 16 C 0.53 23.23 5.93 87.66 0.52 23.75 16 17 O -0.60 -32.98 15.93 -3.04 -0.05 -33.03 16 18 C -0.15 -4.46 4.13 -11.54 -0.05 -4.51 16 19 H 0.14 3.54 6.35 -2.39 -0.02 3.53 16 20 C -0.07 -1.69 7.49 30.59 0.23 -1.46 16 21 C -0.23 -6.45 5.04 -52.19 -0.26 -6.71 16 22 C -0.14 -4.18 10.21 30.59 0.31 -3.87 16 23 C -0.09 -1.99 10.53 30.59 0.32 -1.67 16 24 H 0.04 1.50 7.88 -2.39 -0.02 1.48 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.02 0.99 6.39 -2.38 -0.02 0.98 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.02 0.63 6.61 -2.39 -0.02 0.61 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.64 5.32 -2.39 -0.01 1.63 16 33 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 34 H 0.10 2.56 5.74 -2.39 -0.01 2.55 16 35 H -0.02 -1.18 7.53 -2.39 -0.02 -1.20 16 36 H 0.04 2.20 5.81 -2.38 -0.01 2.18 16 37 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 38 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 39 H 0.15 2.14 8.06 -2.39 -0.02 2.13 16 40 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 42 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16 43 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -77.58 336.87 5.63 -71.95 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.97 Total: 15.14 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.05 Total: -17.58 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.38 Total: -84.94 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.05 Total: -33.03 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -77.58 5.63 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421454726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.574 kcal (2) G-P(sol) polarization free energy of solvation -77.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds