Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.52996 * 109.47356 * 120.00396 * 2 1 3 5 5 C 1.52998 * 109.47327 * 64.99655 * 4 2 1 6 6 N 1.46497 * 109.47219 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99773 * 270.00204 * 6 5 4 8 8 C 1.50699 * 109.47216 * 269.99616 * 7 6 5 9 9 H 1.07999 * 119.99878 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00112 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00036 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00131 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47288 * 89.99943 * 12 10 8 14 14 H 1.48504 * 109.47173 * 209.99941 * 12 10 8 15 15 H 1.48507 * 109.47202 * 330.00017 * 12 10 8 16 16 C 1.34771 * 120.00293 * 90.00358 * 6 5 4 17 17 O 1.21284 * 119.99877 * 359.97438 * 16 6 5 18 18 C 1.50699 * 120.00334 * 180.02562 * 16 6 5 19 19 H 1.09002 * 115.55631 * 325.68341 * 18 16 6 20 20 C 1.52997 * 117.50465 * 111.37385 * 18 16 6 21 21 C 1.52995 * 117.50207 * 179.97438 * 18 16 6 22 22 C 1.52996 * 138.58372 * 23.39658 * 21 18 16 23 23 C 1.52988 * 138.58963 * 121.60633 * 21 18 16 24 24 H 1.09002 * 109.46741 * 59.99683 * 1 2 3 25 25 H 1.08993 * 109.47036 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47096 * 300.00056 * 1 2 3 27 27 H 1.09002 * 109.47238 * 240.00809 * 2 1 3 28 28 H 1.09001 * 109.47361 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47110 * 300.00074 * 3 2 1 30 30 H 1.09005 * 109.47111 * 60.00100 * 3 2 1 31 31 H 1.09002 * 109.46525 * 304.99591 * 4 2 1 32 32 H 1.09003 * 109.47369 * 185.00307 * 4 2 1 33 33 H 1.09000 * 109.46651 * 60.00283 * 5 4 2 34 34 H 1.08995 * 109.47147 * 300.00634 * 5 4 2 35 35 H 1.09001 * 109.47611 * 30.00366 * 7 6 5 36 36 H 1.09007 * 109.47263 * 149.99978 * 7 6 5 37 37 H 0.96994 * 120.00173 * 179.97438 * 11 10 8 38 38 H 1.08999 * 117.49685 * 0.02562 * 20 18 16 39 39 H 1.08997 * 117.50044 * 214.97707 * 20 18 16 40 40 H 1.09005 * 117.49608 * 238.37836 * 22 21 18 41 41 H 1.08994 * 117.50371 * 23.40458 * 22 21 18 42 42 H 1.08997 * 117.50291 * 336.60812 * 23 21 18 43 43 H 1.09007 * 117.49557 * 121.60082 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1231 -2.8860 2.3842 7 6 3.4514 -3.5040 2.3828 8 6 3.3409 -4.9312 1.9118 9 1 2.3777 -5.3372 1.6402 10 6 4.4695 -5.7187 1.8275 11 7 4.3731 -6.9641 1.4159 12 14 6.1354 -5.0168 2.2978 13 1 6.3816 -5.2521 3.7433 14 1 7.1963 -5.6829 1.5002 15 1 6.1529 -3.5573 2.0240 16 6 1.3500 -2.9528 3.4862 17 8 0.2506 -2.4407 3.4875 18 6 1.8521 -3.6626 4.7171 19 1 2.4824 -4.5328 4.5338 20 6 2.1677 -2.8080 5.9462 21 6 0.9278 -3.7034 5.9355 22 6 -0.5665 -3.5974 6.2461 23 6 0.2573 -4.7455 6.8327 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6054 -0.2617 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 2.0699 -2.6549 0.3001 34 1 0.5490 -2.2724 1.1419 35 1 4.1092 -2.9502 1.7130 36 1 3.8619 -3.4854 3.3924 37 1 5.1671 -7.5180 1.3563 38 1 2.0118 -1.7323 5.8647 39 1 3.0056 -3.1159 6.5717 40 1 -0.8844 -2.8072 6.9265 41 1 -1.2654 -3.8375 5.4450 42 1 0.1004 -5.7410 6.4174 43 1 0.4817 -4.7109 7.8988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421763934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = 3.943596 kcal Electronic energy + Delta-G solvation = -20733.960713 eV Core-core repulsion = 17780.572613 eV Total energy + Delta-G solvation = -2953.388099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.54491 -37.47005 -36.28397 -34.76330 -32.51064 -32.24816 -29.48618 -27.47666 -27.04240 -24.35814 -22.73638 -22.13113 -21.78384 -19.84155 -19.35055 -17.74316 -17.01743 -16.47576 -15.55254 -14.99659 -14.76475 -14.57837 -14.36623 -14.20210 -13.46267 -13.36686 -13.23974 -12.66324 -12.37783 -12.13090 -12.04977 -11.94995 -11.55933 -11.31937 -11.18218 -11.05948 -10.98836 -10.79842 -10.68584 -10.46063 -10.23172 -10.16071 -9.86889 -9.72381 -9.65185 -9.54474 -8.97486 -8.72167 -7.70477 -6.21614 -4.23237 3.15735 3.17329 3.25427 3.26269 3.67973 4.10180 4.19437 4.26368 4.67048 4.99406 5.07341 5.08835 5.10747 5.15175 5.20646 5.52364 5.69613 5.71723 5.77038 5.80623 5.84650 5.86583 5.88800 5.93989 5.96351 5.99126 6.07127 6.09394 6.16888 6.24687 6.30844 6.35593 6.42476 6.47072 6.53070 6.59915 6.62972 6.72317 7.39433 7.45902 8.15646 8.43103 8.83820 8.99092 9.37913 10.91128 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.010064 B = 0.008511 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.583428 B = 3289.098270 C = 5368.140100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.588 5.588 7 C 0.209 3.791 8 C -0.541 4.541 9 H 0.078 0.922 10 C 0.076 3.924 11 N -0.891 5.891 12 Si 0.871 3.129 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.547 3.453 17 O -0.564 6.564 18 C -0.127 4.127 19 H 0.138 0.862 20 C -0.107 4.107 21 C -0.202 4.202 22 C -0.115 4.115 23 C -0.133 4.133 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 11.076 4.171 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.317 5.317 7 C 0.088 3.912 8 C -0.579 4.579 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.529 5.529 12 Si 0.697 3.303 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.188 1.188 16 C 0.335 3.665 17 O -0.444 6.444 18 C -0.147 4.147 19 H 0.156 0.844 20 C -0.144 4.144 21 C -0.203 4.203 22 C -0.152 4.152 23 C -0.170 4.170 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.044 11.162 4.101 12.560 hybrid contribution 1.202 0.019 0.060 1.204 sum -2.842 11.180 4.161 12.263 Atomic orbital electron populations 1.21869 0.95270 1.02144 1.01134 1.21054 0.95943 0.95868 0.98477 1.21822 1.00812 0.96228 1.01312 1.22003 1.00844 0.96048 0.97732 1.21379 1.00140 0.90811 0.88057 1.47828 1.18535 1.53437 1.11902 1.19801 0.79722 0.94202 0.97512 1.21412 0.96421 0.94360 1.45739 0.90435 1.24881 0.98820 0.94621 0.94423 1.69895 1.29832 1.06970 1.46171 0.86932 0.84257 0.79919 0.79185 1.19815 1.20897 1.18836 1.19507 0.84200 0.78970 0.83818 1.90580 1.21069 1.48891 1.83907 1.22100 1.02303 1.02815 0.87525 0.84402 1.22594 0.96509 0.96902 0.98427 1.21123 0.93425 1.04725 1.00996 1.22507 0.91308 0.99519 1.01834 1.22708 1.02134 0.94511 0.97632 0.93266 0.92199 0.92789 0.91121 0.92853 0.93011 0.92925 0.91962 0.92043 0.90447 0.90597 0.94923 0.95087 0.92378 0.88696 0.88073 0.89122 0.88455 0.88595 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.95 37.16 0.33 -1.52 16 2 C -0.09 -1.22 2.92 -90.62 -0.26 -1.48 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.13 -1.98 5.01 -26.73 -0.13 -2.12 16 5 C 0.12 2.20 5.16 -4.04 -0.02 2.18 16 6 N -0.59 -12.31 2.46 -175.06 -0.43 -12.74 16 7 C 0.21 4.67 3.87 -5.19 -0.02 4.65 16 8 C -0.54 -14.37 9.63 -34.44 -0.33 -14.70 16 9 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 10 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 12 Si 0.87 19.83 27.47 -169.99 -4.67 15.16 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 16 C 0.55 11.58 7.46 -10.99 -0.08 11.50 16 17 O -0.56 -12.73 15.82 5.55 0.09 -12.64 16 18 C -0.13 -2.43 4.80 -91.78 -0.44 -2.87 16 19 H 0.14 2.85 7.00 -51.93 -0.36 2.49 16 20 C -0.11 -1.68 10.23 -26.76 -0.27 -1.95 16 21 C -0.20 -3.38 5.05 -154.55 -0.78 -4.16 16 22 C -0.11 -1.73 10.16 -26.73 -0.27 -2.00 16 23 C -0.13 -1.86 10.53 -26.74 -0.28 -2.14 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 34 H 0.08 1.44 5.84 -51.93 -0.30 1.13 16 35 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 36 H 0.03 0.67 6.07 -51.93 -0.31 0.36 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -29.74 349.93 -8.91 -38.65 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.62 Total: 5.42 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.32 Total: -13.92 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.34 Total: -37.94 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.74 -8.91 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421763934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.595 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds